Wall clock time and date at job start Tue Mar 31 2020 08:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47328 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47322 * 29.99955 * 3 2 1 6 6 H 1.48503 * 109.47107 * 150.00000 * 3 2 1 7 7 C 1.37878 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99978 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.39944 * 120.00001 * 179.97438 * 10 9 7 12 12 C 1.38860 * 120.01602 * 180.02562 * 11 10 9 13 13 C 1.38113 * 119.97546 * 180.02562 * 12 11 10 14 14 C 1.38698 * 120.02278 * 359.97438 * 13 12 11 15 15 O 1.36004 * 119.98023 * 179.97438 * 14 13 12 16 16 C 1.42893 * 117.00195 * 5.47854 * 15 14 13 17 17 H 1.09001 * 109.47275 * 35.10602 * 16 15 14 18 18 C 1.53007 * 109.46893 * 275.10963 * 16 15 14 19 19 C 1.53004 * 109.47082 * 179.97438 * 18 16 15 20 20 C 1.53009 * 109.46944 * 59.99708 * 19 18 16 21 21 C 1.52998 * 109.47066 * 300.00125 * 20 19 18 22 22 C 1.52995 * 109.47363 * 59.99941 * 21 20 19 23 23 H 1.09001 * 109.47145 * 59.99976 * 22 21 20 24 24 O 1.42901 * 109.47359 * 179.97438 * 22 21 20 25 25 C 1.38704 * 120.03646 * 0.27796 * 14 13 12 26 26 C 1.38107 * 120.01708 * 359.48559 * 25 14 13 27 27 H 0.97000 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47271 * 59.99772 * 9 7 2 29 29 H 1.08996 * 109.47370 * 299.99916 * 9 7 2 30 30 H 0.97003 * 119.99912 * 0.02562 * 10 9 7 31 31 H 1.07995 * 120.01448 * 0.04938 * 12 11 10 32 32 H 1.08004 * 119.98447 * 180.02562 * 13 12 11 33 33 H 1.09001 * 109.46865 * 299.99890 * 18 16 15 34 34 H 1.08997 * 109.47028 * 60.00181 * 18 16 15 35 35 H 1.08999 * 109.46792 * 300.00334 * 19 18 16 36 36 H 1.08997 * 109.46979 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.46505 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.47071 * 59.99922 * 20 19 18 39 39 H 1.09001 * 109.47010 * 299.99834 * 21 20 19 40 40 H 1.09001 * 109.47090 * 179.97438 * 21 20 19 41 41 H 0.96702 * 114.00227 * 300.00194 * 24 22 21 42 42 H 1.07993 * 119.98714 * 179.72324 * 25 14 13 43 43 H 1.08004 * 120.00742 * 180.25805 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3758 -2.8309 -0.0020 12 6 5.8390 -4.1400 -0.0024 13 6 7.1971 -4.3914 -0.0029 14 6 8.0980 -3.3369 -0.0035 15 8 9.4352 -3.5854 -0.0034 16 6 9.8414 -4.9501 -0.1243 17 1 9.1491 -5.4786 -0.7796 18 6 9.8382 -5.6074 1.2574 19 6 10.2725 -7.0688 1.1279 20 6 11.6823 -7.1313 0.5365 21 6 11.6854 -6.4740 -0.8451 22 6 11.2511 -5.0127 -0.7156 23 1 11.9437 -4.4844 -0.0604 24 8 11.2545 -4.3986 -2.0060 25 6 7.6361 -2.0290 0.0022 26 6 6.2785 -1.7758 -0.0022 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6804 0.8889 29 1 3.8746 -0.6801 -0.8911 30 1 3.3695 -3.3125 -0.0010 31 1 5.1377 -4.9612 -0.0028 32 1 7.5575 -5.4095 -0.0037 33 1 10.5305 -5.0789 1.9127 34 1 8.8338 -5.5632 1.6784 35 1 9.5799 -7.5969 0.4726 36 1 10.2707 -7.5369 2.1123 37 1 11.9919 -8.1724 0.4447 38 1 12.3750 -6.6030 1.1917 39 1 10.9928 -7.0023 -1.5003 40 1 12.6898 -6.5181 -1.2662 41 1 12.1182 -4.4021 -2.4409 42 1 8.3383 -1.2086 0.0063 43 1 5.9190 -0.7573 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819482202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:10 Heat of formation + Delta-G solvation = -75.998509 kcal Electronic energy + Delta-G solvation = -22834.961275 eV Core-core repulsion = 19458.509772 eV Total energy + Delta-G solvation = -3376.451503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36303 -38.78475 -37.11949 -35.78333 -34.48233 -32.43732 -31.01217 -30.25224 -29.59493 -28.71852 -26.24048 -23.47881 -23.11721 -22.25836 -21.76172 -20.62439 -20.00737 -18.01165 -17.52840 -17.33305 -16.38310 -15.84326 -15.22210 -15.05574 -14.65071 -14.52320 -14.15786 -13.98574 -13.59641 -13.56075 -13.38390 -13.15287 -13.01055 -12.65862 -12.49513 -12.40133 -11.98073 -11.79946 -11.49158 -11.39371 -11.18521 -10.91153 -10.81554 -10.62768 -10.48675 -10.40277 -10.10470 -9.97013 -9.46226 -8.98224 -8.63414 -8.57715 -6.42529 -6.21220 -4.22786 1.77262 2.14747 3.23335 3.30493 3.33000 3.33260 3.80701 4.27636 4.30069 4.33570 4.43384 4.49779 4.59748 4.75071 4.84420 4.91546 4.98206 5.05913 5.13331 5.24531 5.28283 5.32749 5.44410 5.57898 5.62301 5.68710 5.72701 5.78686 5.82281 5.87648 6.01284 6.12554 6.38919 6.50328 6.67974 6.78277 6.89227 7.03580 7.12762 7.39332 7.40262 7.79235 8.00874 8.44091 8.63937 8.83439 9.38538 10.91309 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.002836 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.505673 B = 9869.203520 C =10288.937170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.224 3.776 10 N -0.727 5.727 11 C 0.202 3.798 12 C -0.176 4.176 13 C -0.156 4.156 14 C 0.050 3.950 15 O -0.308 6.308 16 C 0.099 3.901 17 H 0.076 0.924 18 C -0.145 4.145 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.150 4.150 22 C 0.111 3.889 23 H 0.063 0.937 24 O -0.556 6.556 25 C -0.097 4.097 26 C -0.169 4.169 27 H 0.267 0.733 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.396 0.604 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.375 0.625 42 H 0.122 0.878 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.079 -13.437 0.495 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.101 3.899 10 N -0.352 5.352 11 C 0.095 3.905 12 C -0.200 4.200 13 C -0.175 4.175 14 C 0.004 3.996 15 O -0.223 6.223 16 C 0.041 3.959 17 H 0.094 0.906 18 C -0.183 4.183 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.187 4.187 22 C 0.052 3.948 23 H 0.080 0.920 24 O -0.361 6.361 25 C -0.116 4.116 26 C -0.192 4.192 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.230 0.770 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.222 0.778 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 24.334 -12.859 0.660 27.531 hybrid contribution 0.500 0.304 -0.150 0.604 sum 24.834 -12.555 0.510 27.832 Atomic orbital electron populations 1.69885 1.06239 1.27358 1.49611 1.24833 0.94813 0.99158 0.94042 0.86797 0.80442 0.83326 0.78903 1.19849 1.20891 1.18729 1.21077 0.88690 0.95143 1.52810 0.90401 1.19453 0.95563 0.79449 0.95434 1.45126 1.01614 1.09291 1.79187 1.17989 0.85440 0.92924 0.94168 1.20322 0.94889 0.94884 1.09878 1.20853 0.93216 0.97648 1.05787 1.18560 0.81831 0.93806 1.05406 1.86061 1.20700 1.26240 1.89302 1.22198 0.94876 0.82723 0.96060 0.90638 1.22126 1.03477 0.95793 0.96887 1.21547 0.96626 0.96005 1.01590 1.21535 0.97465 1.00905 0.95849 1.22267 1.02139 0.95910 0.98429 1.21822 0.95847 0.92075 0.85035 0.91951 1.86640 1.36306 1.81583 1.31584 1.20089 0.94839 0.93885 1.02774 1.20517 0.91543 0.98635 1.08488 0.92288 0.96564 0.97016 0.77018 0.86451 0.86330 0.90720 0.90205 0.91547 0.91097 0.91343 0.91563 0.90786 0.91022 0.77788 0.86027 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 8 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 9 C 0.22 5.38 3.74 -5.20 -0.02 5.36 16 10 N -0.73 -15.26 5.74 -59.76 -0.34 -15.60 16 11 C 0.20 3.85 6.66 -83.69 -0.56 3.30 16 12 C -0.18 -2.93 9.89 -39.40 -0.39 -3.32 16 13 C -0.16 -2.38 8.23 -39.46 -0.32 -2.71 16 14 C 0.05 0.81 6.60 -39.24 -0.26 0.55 16 15 O -0.31 -4.64 9.70 -29.33 -0.28 -4.93 16 16 C 0.10 1.13 1.80 -26.73 -0.05 1.08 16 17 H 0.08 0.91 6.31 -51.93 -0.33 0.58 16 18 C -0.15 -1.35 5.18 -26.73 -0.14 -1.49 16 19 C -0.12 -0.83 5.92 -26.72 -0.16 -0.99 16 20 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 21 C -0.15 -0.98 5.54 -26.73 -0.15 -1.13 16 22 C 0.11 1.04 3.15 -26.74 -0.08 0.96 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 O -0.56 -5.90 13.21 -44.81 -0.59 -6.49 16 25 C -0.10 -1.64 9.98 -39.46 -0.39 -2.03 16 26 C -0.17 -3.13 9.31 -39.40 -0.37 -3.50 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.40 7.01 -51.93 -0.36 0.04 16 29 H 0.01 0.29 7.38 -51.93 -0.38 -0.09 16 30 H 0.40 7.91 8.34 -40.82 -0.34 7.57 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 1.52 5.41 -52.48 -0.28 1.23 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.82 6.90 -51.93 -0.36 0.46 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 2.13 9.08 45.56 0.41 2.54 16 42 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.13 2.37 6.73 -52.48 -0.35 2.02 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -31.90 342.62 -9.24 -41.14 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.80 Total: 8.44 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.48 Total: -18.08 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.43 Total: -41.61 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.88 Total: -11.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.90 -9.24 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819482202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.862 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds