Wall clock time and date at job start Tue Mar 31 2020 08:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47328 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47322 * 29.99955 * 3 2 1 6 6 H 1.48503 * 109.47107 * 150.00000 * 3 2 1 7 7 C 1.37878 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99978 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.39944 * 120.00001 * 179.97438 * 10 9 7 12 12 C 1.38860 * 120.01602 * 180.02562 * 11 10 9 13 13 C 1.38113 * 119.97546 * 180.02562 * 12 11 10 14 14 C 1.38698 * 120.02278 * 359.97438 * 13 12 11 15 15 O 1.36004 * 119.98023 * 179.97438 * 14 13 12 16 16 C 1.42893 * 117.00195 * 5.47854 * 15 14 13 17 17 H 1.09001 * 109.47275 * 35.10602 * 16 15 14 18 18 C 1.53007 * 109.46893 * 275.10963 * 16 15 14 19 19 C 1.53004 * 109.47082 * 179.97438 * 18 16 15 20 20 C 1.53009 * 109.46944 * 59.99708 * 19 18 16 21 21 C 1.52998 * 109.47066 * 300.00125 * 20 19 18 22 22 C 1.52995 * 109.47363 * 59.99941 * 21 20 19 23 23 H 1.09001 * 109.47145 * 59.99976 * 22 21 20 24 24 O 1.42901 * 109.47359 * 179.97438 * 22 21 20 25 25 C 1.38704 * 120.03646 * 0.27796 * 14 13 12 26 26 C 1.38107 * 120.01708 * 359.48559 * 25 14 13 27 27 H 0.97000 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47271 * 59.99772 * 9 7 2 29 29 H 1.08996 * 109.47370 * 299.99916 * 9 7 2 30 30 H 0.97003 * 119.99912 * 0.02562 * 10 9 7 31 31 H 1.07995 * 120.01448 * 0.04938 * 12 11 10 32 32 H 1.08004 * 119.98447 * 180.02562 * 13 12 11 33 33 H 1.09001 * 109.46865 * 299.99890 * 18 16 15 34 34 H 1.08997 * 109.47028 * 60.00181 * 18 16 15 35 35 H 1.08999 * 109.46792 * 300.00334 * 19 18 16 36 36 H 1.08997 * 109.46979 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.46505 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.47071 * 59.99922 * 20 19 18 39 39 H 1.09001 * 109.47010 * 299.99834 * 21 20 19 40 40 H 1.09001 * 109.47090 * 179.97438 * 21 20 19 41 41 H 0.96702 * 114.00227 * 300.00194 * 24 22 21 42 42 H 1.07993 * 119.98714 * 179.72324 * 25 14 13 43 43 H 1.08004 * 120.00742 * 180.25805 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3758 -2.8309 -0.0020 12 6 5.8390 -4.1400 -0.0024 13 6 7.1971 -4.3914 -0.0029 14 6 8.0980 -3.3369 -0.0035 15 8 9.4352 -3.5854 -0.0034 16 6 9.8414 -4.9501 -0.1243 17 1 9.1491 -5.4786 -0.7796 18 6 9.8382 -5.6074 1.2574 19 6 10.2725 -7.0688 1.1279 20 6 11.6823 -7.1313 0.5365 21 6 11.6854 -6.4740 -0.8451 22 6 11.2511 -5.0127 -0.7156 23 1 11.9437 -4.4844 -0.0604 24 8 11.2545 -4.3986 -2.0060 25 6 7.6361 -2.0290 0.0022 26 6 6.2785 -1.7758 -0.0022 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6804 0.8889 29 1 3.8746 -0.6801 -0.8911 30 1 3.3695 -3.3125 -0.0010 31 1 5.1377 -4.9612 -0.0028 32 1 7.5575 -5.4095 -0.0037 33 1 10.5305 -5.0789 1.9127 34 1 8.8338 -5.5632 1.6784 35 1 9.5799 -7.5969 0.4726 36 1 10.2707 -7.5369 2.1123 37 1 11.9919 -8.1724 0.4447 38 1 12.3750 -6.6030 1.1917 39 1 10.9928 -7.0023 -1.5003 40 1 12.6898 -6.5181 -1.2662 41 1 12.1182 -4.4021 -2.4409 42 1 8.3383 -1.2086 0.0063 43 1 5.9190 -0.7573 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819482202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:08 Heat of formation + Delta-G solvation = -97.644672 kcal Electronic energy + Delta-G solvation = -22835.899923 eV Core-core repulsion = 19458.509772 eV Total energy + Delta-G solvation = -3377.390151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39982 -39.87117 -38.25947 -36.49292 -36.09298 -34.43124 -32.16940 -31.08688 -30.78111 -30.02174 -27.83476 -24.86040 -23.87049 -23.47363 -23.07551 -21.77544 -20.86670 -19.48109 -18.96043 -18.24058 -17.51299 -17.47706 -16.53356 -16.09504 -15.98351 -15.44434 -15.33275 -15.11579 -14.96999 -14.61842 -14.52233 -14.47841 -14.22072 -14.02039 -13.69591 -13.51268 -13.38076 -12.87366 -12.67775 -12.56728 -12.35123 -12.12756 -11.88725 -11.72430 -11.67328 -11.51008 -11.47961 -11.24036 -10.90231 -10.82964 -10.27027 -9.90687 -8.38899 -7.90487 -6.46295 0.44097 0.78185 1.35244 1.35916 1.47474 2.29045 2.31664 2.84224 2.93931 2.98987 3.15874 3.65146 3.86480 3.94244 3.99450 4.02412 4.14795 4.16277 4.24743 4.33481 4.45323 4.47103 4.51215 4.64177 4.75652 4.80938 4.88035 4.97510 5.08969 5.09724 5.11387 5.13625 5.19411 5.24288 5.26804 5.32326 5.44728 5.47661 5.50991 5.77050 6.00805 6.52331 6.59288 6.72056 6.89507 7.06423 7.23399 8.76915 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.002836 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.505673 B = 9869.203520 C =10288.937170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.549 4.549 8 H 0.044 0.956 9 C 0.240 3.760 10 N -0.737 5.737 11 C 0.175 3.825 12 C -0.170 4.170 13 C -0.152 4.152 14 C 0.055 3.945 15 O -0.321 6.321 16 C 0.087 3.913 17 H 0.068 0.932 18 C -0.140 4.140 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.142 4.142 22 C 0.111 3.889 23 H 0.066 0.934 24 O -0.583 6.583 25 C -0.107 4.107 26 C -0.180 4.180 27 H 0.271 0.729 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.397 0.603 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.395 0.605 42 H 0.135 0.865 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.192 -14.314 0.595 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.171 1.171 7 C -0.587 4.587 8 H 0.063 0.937 9 C 0.115 3.885 10 N -0.365 5.365 11 C 0.071 3.929 12 C -0.193 4.193 13 C -0.171 4.171 14 C 0.009 3.991 15 O -0.236 6.236 16 C 0.031 3.969 17 H 0.086 0.914 18 C -0.178 4.178 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.180 4.180 22 C 0.052 3.948 23 H 0.084 0.916 24 O -0.392 6.392 25 C -0.126 4.126 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.231 0.769 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.245 0.755 42 H 0.153 0.847 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 27.511 -13.774 0.755 30.776 hybrid contribution -0.349 0.426 -0.199 0.586 sum 27.162 -13.347 0.556 30.269 Atomic orbital electron populations 1.70020 1.08098 1.28645 1.51045 1.25779 0.95661 1.03259 0.93499 0.85720 0.79572 0.78250 0.79529 1.18850 1.20243 1.17068 1.21345 0.90806 0.94087 1.52429 0.93744 1.19089 0.92866 0.81359 0.95146 1.44872 1.02623 1.07934 1.81051 1.18192 0.84425 0.94201 0.96124 1.20561 0.95832 0.94435 1.08445 1.21115 0.92477 0.98870 1.04595 1.18730 0.82790 0.93806 1.03729 1.86059 1.19731 1.28829 1.89002 1.22589 0.96025 0.80928 0.97373 0.91375 1.22089 1.02976 0.97362 0.95401 1.21561 0.97384 0.94101 1.02479 1.21550 0.96779 1.01918 0.95293 1.22222 1.03060 0.93680 0.98990 1.21901 0.94391 0.93943 0.84581 0.91621 1.86580 1.38325 1.82032 1.32239 1.20241 0.94456 0.94950 1.02930 1.20565 0.92287 0.98310 1.09119 0.91957 0.96785 0.97031 0.76906 0.84680 0.83706 0.90647 0.91348 0.91446 0.89932 0.89703 0.90976 0.91316 0.88917 0.75540 0.84691 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 2 C 0.02 0.99 5.47 84.65 0.46 1.45 16 3 Si 0.95 43.41 27.47 68.60 1.88 45.29 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.55 -31.33 9.83 25.60 0.25 -31.08 16 8 H 0.04 2.75 7.84 -2.91 -0.02 2.73 16 9 C 0.24 11.60 3.74 85.63 0.32 11.92 16 10 N -0.74 -31.35 5.74 -342.99 -1.97 -33.31 16 11 C 0.17 6.63 6.66 38.14 0.25 6.89 16 12 C -0.17 -5.45 9.89 22.39 0.22 -5.22 16 13 C -0.15 -4.38 8.23 22.35 0.18 -4.20 16 14 C 0.06 1.73 6.60 22.49 0.15 1.88 16 15 O -0.32 -9.21 9.70 -84.44 -0.82 -10.03 16 16 C 0.09 1.84 1.80 30.60 0.06 1.89 16 17 H 0.07 1.52 6.31 -2.39 -0.02 1.51 16 18 C -0.14 -2.32 5.18 30.60 0.16 -2.17 16 19 C -0.12 -1.29 5.92 30.60 0.18 -1.11 16 20 C -0.12 -0.99 5.92 30.60 0.18 -0.80 16 21 C -0.14 -1.44 5.54 30.59 0.17 -1.27 16 22 C 0.11 1.82 3.15 30.59 0.10 1.92 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 O -0.58 -11.33 13.21 -139.82 -1.85 -13.18 16 25 C -0.11 -3.53 9.98 22.35 0.22 -3.30 16 26 C -0.18 -6.63 9.31 22.39 0.21 -6.42 16 27 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.01 0.70 7.01 -2.38 -0.02 0.68 16 29 H 0.01 0.57 7.38 -2.39 -0.02 0.56 16 30 H 0.40 16.29 8.34 -92.71 -0.77 15.52 16 31 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.15 3.37 5.41 -2.91 -0.02 3.36 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.28 6.90 -2.39 -0.02 1.26 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.39 3.69 9.08 -74.06 -0.67 3.02 16 42 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 43 H 0.12 4.48 6.73 -2.91 -0.02 4.46 16 Total: -1.00 -69.44 342.62 0.19 -69.25 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.48 Total: 28.94 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 3.12 Total: -29.62 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -1.67 Total: -90.65 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -2.67 Total: -23.21 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -69.44 0.19 -69.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819482202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.393 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds