Wall clock time and date at job start Tue Mar 31 2020 08:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42896 * 110.64577 * 300.98058 * 9 7 2 11 11 C 1.55160 * 110.71791 * 64.12185 * 9 7 2 12 12 C 1.55126 * 101.48564 * 153.73087 * 11 9 7 13 13 N 1.47432 * 104.94353 * 323.22464 * 12 11 9 14 14 C 1.34768 * 125.64460 * 203.96743 * 13 12 11 15 15 O 1.21289 * 119.99523 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00740 * 0.03805 * 14 13 12 17 17 H 1.09009 * 115.50192 * 34.41836 * 16 14 13 18 18 C 1.52998 * 117.43277 * 179.77527 * 16 14 13 19 19 H 1.09000 * 119.98473 * 355.25952 * 18 16 14 20 20 C 1.53000 * 117.43115 * 249.06605 * 16 14 13 21 21 H 1.08997 * 119.98815 * 4.73408 * 20 16 14 22 22 C 1.58314 * 115.73788 * 161.16812 * 20 16 14 23 23 H 1.09008 * 116.52649 * 262.54343 * 22 20 16 24 24 C 1.55932 * 104.16381 * 133.51403 * 22 20 16 25 25 C 1.54586 * 104.64055 * 289.43366 * 24 22 20 26 26 C 1.55928 * 117.17319 * 200.45664 * 18 16 14 27 27 H 1.08996 * 115.92233 * 96.94855 * 26 18 16 28 28 C 1.56948 * 101.00933 * 29.43191 * 22 20 16 29 29 C 1.47023 * 108.70215 * 24.00207 * 13 12 11 30 30 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 31 31 H 0.96699 * 113.99963 * 59.29588 * 10 9 7 32 32 H 1.08990 * 111.00527 * 271.93985 * 11 9 7 33 33 H 1.09005 * 111.00198 * 35.79500 * 11 9 7 34 34 H 1.09002 * 110.41958 * 204.29627 * 12 11 9 35 35 H 1.08997 * 110.29727 * 82.09289 * 12 11 9 36 36 H 1.09003 * 110.40006 * 48.21780 * 24 22 20 37 37 H 1.08989 * 110.40740 * 170.52027 * 24 22 20 38 38 H 1.08996 * 110.39897 * 241.20842 * 25 24 22 39 39 H 1.08999 * 110.40063 * 118.78925 * 25 24 22 40 40 H 1.09001 * 112.02208 * 296.56691 * 28 22 20 41 41 H 1.08998 * 112.03009 * 170.04228 * 28 22 20 42 42 H 1.08995 * 109.87896 * 239.52303 * 29 13 12 43 43 H 1.08994 * 109.88201 * 118.35532 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4081 -2.5889 1.1556 11 6 0.4225 -2.6604 -1.2965 12 6 0.3272 -4.2044 -1.4126 13 7 1.6314 -4.7025 -0.9385 14 6 2.1852 -5.8871 -1.2644 15 8 3.2680 -6.1949 -0.8128 16 6 1.4594 -6.8293 -2.1899 17 1 0.8721 -6.3550 -2.9763 18 6 2.1444 -8.1558 -2.5245 19 1 3.1524 -8.3553 -2.1607 20 6 0.9158 -8.1275 -1.5898 21 1 0.9920 -8.3056 -0.5172 22 6 -0.2094 -8.8560 -2.4322 23 1 -1.2404 -8.6689 -2.1317 24 6 0.2348 -10.3506 -2.4499 25 6 1.4808 -10.3771 -3.3644 26 6 1.6721 -8.8960 -3.8130 27 1 2.2760 -8.7317 -4.7054 28 6 0.1781 -8.4208 -3.8895 29 6 2.2271 -3.6932 -0.0508 30 1 -0.4850 0.8400 0.0004 31 1 -0.2489 -1.8821 1.2179 32 1 -0.5651 -2.2122 -1.1890 33 1 0.9510 -2.2375 -2.1509 34 1 0.1629 -4.4984 -2.4493 35 1 -0.4759 -4.5823 -0.7800 36 1 0.4943 -10.6818 -1.4444 37 1 -0.5555 -10.9770 -2.8633 38 1 1.3038 -11.0162 -4.2294 39 1 2.3529 -10.7214 -2.8085 40 1 0.0988 -7.3427 -4.0288 41 1 -0.3870 -8.9685 -4.6436 42 1 3.1876 -3.3685 -0.4509 43 1 2.3607 -4.1100 0.9473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823527746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:46 Heat of formation + Delta-G solvation = -46.018953 kcal Electronic energy + Delta-G solvation = -23885.650705 eV Core-core repulsion = 20510.499212 eV Total energy + Delta-G solvation = -3375.151492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -41.30587 -39.10556 -37.18718 -34.30796 -33.51681 -32.19517 -29.74842 -29.00163 -28.44690 -28.14898 -25.68448 -23.81965 -22.16006 -21.72693 -20.13786 -19.39421 -18.73849 -18.33424 -17.41549 -16.94461 -16.06730 -15.57270 -15.32888 -14.99168 -14.79265 -14.22100 -13.78292 -13.21187 -12.99472 -12.95236 -12.47846 -12.14691 -12.03972 -11.66095 -11.55695 -11.53027 -11.41197 -11.37562 -11.36868 -11.25154 -10.99539 -10.88488 -10.63346 -10.50313 -10.44786 -10.13269 -9.84466 -9.65360 -9.44985 -9.28278 -8.68609 -8.22724 -7.99564 -6.30626 -4.37887 2.84736 3.19029 3.26607 3.30700 3.41806 3.89969 4.23280 4.28377 4.35200 4.37263 4.93074 4.94681 4.97658 4.99741 5.02397 5.15980 5.19766 5.24320 5.34196 5.42519 5.56695 5.64491 5.70808 5.78133 5.84956 5.90366 5.94470 5.96034 5.99682 6.03668 6.12410 6.20509 6.24877 6.28448 6.45117 6.69790 6.90316 6.97451 7.28684 7.33216 7.71950 8.00034 8.13111 8.63024 8.67367 9.29924 9.40620 10.77116 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036556 B = 0.003495 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.756031 B = 8008.946740 C = 8180.751411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.136 4.136 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.551 3.449 15 O -0.557 6.557 16 C -0.160 4.160 17 H 0.123 0.877 18 C -0.131 4.131 19 H 0.121 0.879 20 C -0.134 4.134 21 H 0.118 0.882 22 C -0.071 4.071 23 H 0.101 0.899 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.074 4.074 27 H 0.101 0.899 28 C -0.139 4.139 29 C 0.123 3.877 30 H 0.268 0.732 31 H 0.384 0.616 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 -15.592 -8.174 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.175 4.175 12 C -0.025 4.025 13 N -0.335 5.335 14 C 0.339 3.661 15 O -0.436 6.436 16 C -0.181 4.181 17 H 0.140 0.860 18 C -0.150 4.150 19 H 0.139 0.861 20 C -0.153 4.153 21 H 0.136 0.864 22 C -0.090 4.090 23 H 0.119 0.881 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.092 4.092 27 H 0.119 0.881 28 C -0.176 4.176 29 C 0.001 3.999 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.544 -16.238 -7.816 18.200 hybrid contribution 0.051 1.604 -0.086 1.607 sum -2.493 -14.634 -7.902 16.817 Atomic orbital electron populations 1.69636 1.05952 1.27691 1.50399 1.24984 0.95041 0.99537 0.93455 0.86403 0.79911 0.82353 0.78251 1.20467 1.20996 1.19674 1.21543 0.93729 0.90247 1.51805 0.91748 1.19447 0.86568 0.90709 0.82565 1.86115 1.51734 1.54971 1.46725 1.23348 1.02851 0.90261 1.00992 1.22515 0.84776 0.97432 0.97758 1.48532 1.20888 1.16818 1.47243 1.19155 0.85087 0.80692 0.81140 1.90648 1.21718 1.75514 1.55760 1.22335 1.03993 0.89862 1.01890 0.85952 1.23526 0.97681 0.96494 0.97268 0.86115 1.24040 0.96269 0.96722 0.98262 0.86423 1.23586 0.97051 0.94373 0.93954 0.88077 1.22528 0.97372 0.95640 0.99981 1.22506 0.98150 0.95637 0.99044 1.23170 0.95734 0.94452 0.95812 0.88125 1.23754 0.96004 1.01225 0.96579 1.22079 0.97095 0.87917 0.92796 0.92157 0.76491 0.89452 0.91492 0.92268 0.91905 0.91562 0.91700 0.91734 0.91529 0.90495 0.90771 0.91037 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.88 10.67 55.43 0.59 -22.29 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.02 8.21 -34.44 -0.28 -14.31 16 8 H 0.06 1.70 7.55 -52.49 -0.40 1.30 16 9 C 0.25 5.99 0.85 -89.93 -0.08 5.92 16 10 O -0.59 -14.78 13.08 -35.23 -0.46 -15.24 16 11 C -0.14 -2.92 5.60 -24.46 -0.14 -3.06 16 12 C 0.10 1.79 6.69 -2.41 -0.02 1.77 16 13 N -0.60 -12.24 3.33 -170.38 -0.57 -12.81 16 14 C 0.55 10.72 7.63 -10.99 -0.08 10.64 16 15 O -0.56 -12.57 16.68 5.55 0.09 -12.47 16 16 C -0.16 -2.35 4.73 -91.77 -0.43 -2.79 16 17 H 0.12 1.63 4.88 -51.92 -0.25 1.38 16 18 C -0.13 -1.69 5.87 -88.32 -0.52 -2.21 16 19 H 0.12 1.75 7.82 -51.93 -0.41 1.34 16 20 C -0.13 -1.70 6.39 -86.96 -0.56 -2.26 16 21 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 22 C -0.07 -0.70 5.22 -83.99 -0.44 -1.14 16 23 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 24 C -0.12 -1.01 6.20 -24.33 -0.15 -1.16 16 25 C -0.12 -1.00 6.21 -24.33 -0.15 -1.15 16 26 C -0.07 -0.72 5.18 -85.35 -0.44 -1.16 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 C -0.14 -1.28 6.23 -22.45 -0.14 -1.42 16 29 C 0.12 2.83 6.22 -3.06 -0.02 2.81 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 31 H 0.38 9.68 7.21 45.56 0.33 10.01 16 32 H 0.09 1.94 7.65 -51.93 -0.40 1.54 16 33 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 34 H 0.06 0.91 7.00 -51.93 -0.36 0.55 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.06 0.47 8.14 -51.94 -0.42 0.05 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 40 H 0.08 0.76 5.90 -51.93 -0.31 0.45 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.68 7.64 -51.93 -0.40 1.28 16 43 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -28.35 334.27 -9.82 -38.17 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.96 Total: 12.16 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.54 Total: -7.76 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.02 Total: -35.10 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.37 Total: -27.72 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.35 -9.82 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.847 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds