Wall clock time and date at job start Tue Mar 31 2020 08:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42896 * 110.64577 * 300.98058 * 9 7 2 11 11 C 1.55160 * 110.71791 * 64.12185 * 9 7 2 12 12 C 1.55126 * 101.48564 * 153.73087 * 11 9 7 13 13 N 1.47432 * 104.94353 * 323.22464 * 12 11 9 14 14 C 1.34768 * 125.64460 * 203.96743 * 13 12 11 15 15 O 1.21289 * 119.99523 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00740 * 0.03805 * 14 13 12 17 17 H 1.09009 * 115.50192 * 34.41836 * 16 14 13 18 18 C 1.52998 * 117.43277 * 179.77527 * 16 14 13 19 19 H 1.09000 * 119.98473 * 355.25952 * 18 16 14 20 20 C 1.53000 * 117.43115 * 249.06605 * 16 14 13 21 21 H 1.08997 * 119.98815 * 4.73408 * 20 16 14 22 22 C 1.58314 * 115.73788 * 161.16812 * 20 16 14 23 23 H 1.09008 * 116.52649 * 262.54343 * 22 20 16 24 24 C 1.55932 * 104.16381 * 133.51403 * 22 20 16 25 25 C 1.54586 * 104.64055 * 289.43366 * 24 22 20 26 26 C 1.55928 * 117.17319 * 200.45664 * 18 16 14 27 27 H 1.08996 * 115.92233 * 96.94855 * 26 18 16 28 28 C 1.56948 * 101.00933 * 29.43191 * 22 20 16 29 29 C 1.47023 * 108.70215 * 24.00207 * 13 12 11 30 30 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 31 31 H 0.96699 * 113.99963 * 59.29588 * 10 9 7 32 32 H 1.08990 * 111.00527 * 271.93985 * 11 9 7 33 33 H 1.09005 * 111.00198 * 35.79500 * 11 9 7 34 34 H 1.09002 * 110.41958 * 204.29627 * 12 11 9 35 35 H 1.08997 * 110.29727 * 82.09289 * 12 11 9 36 36 H 1.09003 * 110.40006 * 48.21780 * 24 22 20 37 37 H 1.08989 * 110.40740 * 170.52027 * 24 22 20 38 38 H 1.08996 * 110.39897 * 241.20842 * 25 24 22 39 39 H 1.08999 * 110.40063 * 118.78925 * 25 24 22 40 40 H 1.09001 * 112.02208 * 296.56691 * 28 22 20 41 41 H 1.08998 * 112.03009 * 170.04228 * 28 22 20 42 42 H 1.08995 * 109.87896 * 239.52303 * 29 13 12 43 43 H 1.08994 * 109.88201 * 118.35532 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4081 -2.5889 1.1556 11 6 0.4225 -2.6604 -1.2965 12 6 0.3272 -4.2044 -1.4126 13 7 1.6314 -4.7025 -0.9385 14 6 2.1852 -5.8871 -1.2644 15 8 3.2680 -6.1949 -0.8128 16 6 1.4594 -6.8293 -2.1899 17 1 0.8721 -6.3550 -2.9763 18 6 2.1444 -8.1558 -2.5245 19 1 3.1524 -8.3553 -2.1607 20 6 0.9158 -8.1275 -1.5898 21 1 0.9920 -8.3056 -0.5172 22 6 -0.2094 -8.8560 -2.4322 23 1 -1.2404 -8.6689 -2.1317 24 6 0.2348 -10.3506 -2.4499 25 6 1.4808 -10.3771 -3.3644 26 6 1.6721 -8.8960 -3.8130 27 1 2.2760 -8.7317 -4.7054 28 6 0.1781 -8.4208 -3.8895 29 6 2.2271 -3.6932 -0.0508 30 1 -0.4850 0.8400 0.0004 31 1 -0.2489 -1.8821 1.2179 32 1 -0.5651 -2.2122 -1.1890 33 1 0.9510 -2.2375 -2.1509 34 1 0.1629 -4.4984 -2.4493 35 1 -0.4759 -4.5823 -0.7800 36 1 0.4943 -10.6818 -1.4444 37 1 -0.5555 -10.9770 -2.8633 38 1 1.3038 -11.0162 -4.2294 39 1 2.3529 -10.7214 -2.8085 40 1 0.0988 -7.3427 -4.0288 41 1 -0.3870 -8.9685 -4.6436 42 1 3.1876 -3.3685 -0.4509 43 1 2.3607 -4.1100 0.9473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823527746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:46 Heat of formation + Delta-G solvation = -62.926171 kcal Electronic energy + Delta-G solvation = -23886.383857 eV Core-core repulsion = 20510.499212 eV Total energy + Delta-G solvation = -3375.884644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.29272 -40.66302 -38.91240 -36.14326 -34.50460 -34.19981 -31.50197 -30.16364 -29.76484 -28.91371 -27.44962 -25.27368 -23.68036 -22.55027 -21.66438 -20.82012 -19.66227 -19.49960 -19.24570 -18.46001 -17.05634 -16.97986 -16.88812 -16.61130 -16.13222 -15.96704 -15.37566 -14.82133 -14.29108 -14.01800 -13.92257 -13.76310 -13.30836 -13.23889 -13.20417 -13.08922 -12.66459 -12.50658 -12.42229 -12.38272 -12.29502 -12.14903 -12.02661 -11.99416 -11.79786 -11.32705 -11.20690 -10.95854 -10.72965 -10.64207 -10.60648 -10.16356 -9.68056 -8.27118 -6.41554 1.39390 1.40262 1.43452 1.52468 1.91693 2.38239 2.77399 2.98071 3.22595 3.55010 3.58327 3.73289 3.89371 3.92755 3.98061 3.99659 4.11835 4.22099 4.30841 4.40424 4.45748 4.47362 4.53965 4.60925 4.63633 4.70915 4.86970 4.89096 5.03540 5.07952 5.13545 5.19148 5.22129 5.24222 5.27315 5.27924 5.41446 5.43737 5.49477 5.53507 5.73846 6.04189 6.53741 6.62388 7.07553 7.29047 7.40064 8.79230 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036556 B = 0.003495 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.756031 B = 8008.946740 C = 8180.751411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.039 3.961 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.566 4.566 8 H 0.050 0.950 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.126 4.126 12 C 0.107 3.893 13 N -0.607 5.607 14 C 0.544 3.456 15 O -0.598 6.598 16 C -0.168 4.168 17 H 0.145 0.855 18 C -0.133 4.133 19 H 0.096 0.904 20 C -0.131 4.131 21 H 0.100 0.900 22 C -0.064 4.064 23 H 0.115 0.885 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.069 4.069 27 H 0.112 0.888 28 C -0.133 4.133 29 C 0.128 3.872 30 H 0.273 0.727 31 H 0.382 0.618 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 -16.731 -10.296 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.604 4.604 8 H 0.068 0.932 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.164 4.164 12 C -0.014 4.014 13 N -0.339 5.339 14 C 0.335 3.665 15 O -0.480 6.480 16 C -0.188 4.188 17 H 0.162 0.838 18 C -0.152 4.152 19 H 0.114 0.886 20 C -0.150 4.150 21 H 0.119 0.881 22 C -0.082 4.082 23 H 0.133 0.867 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.087 4.087 27 H 0.130 0.870 28 C -0.170 4.170 29 C 0.005 3.995 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.297 -17.389 -9.951 20.490 hybrid contribution 0.642 1.946 0.648 2.149 sum -3.654 -15.443 -9.303 18.395 Atomic orbital electron populations 1.69682 1.06488 1.28538 1.49674 1.25577 0.95915 1.01904 0.92894 0.85531 0.78495 0.79042 0.78377 1.19774 1.20173 1.20382 1.21730 0.93384 0.91860 1.53424 0.93199 1.19571 0.86995 0.90329 0.83458 1.86100 1.51791 1.54812 1.47624 1.23131 1.01618 0.92738 0.98945 1.22538 0.83805 0.94848 1.00223 1.48618 1.21525 1.16797 1.46915 1.20083 0.84777 0.80631 0.81004 1.90618 1.23700 1.76243 1.57432 1.22274 1.05073 0.89708 1.01775 0.83800 1.23625 0.96818 0.95212 0.99496 0.88568 1.24190 0.97947 0.94897 0.97936 0.88149 1.23685 0.96516 0.94535 0.93507 0.86674 1.22552 0.97958 0.95054 0.99825 1.22526 0.97897 0.94997 0.99774 1.23264 0.96339 0.94711 0.94371 0.87036 1.23776 0.95332 1.01350 0.96580 1.21805 0.96707 0.88538 0.92444 0.91721 0.76751 0.90041 0.92294 0.88312 0.91071 0.92332 0.89508 0.89576 0.92435 0.90810 0.88390 0.92457 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.89 10.67 21.45 0.23 -45.66 16 2 C 0.04 1.99 5.28 84.65 0.45 2.43 16 3 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.57 -30.40 8.21 25.60 0.21 -30.19 16 8 H 0.05 2.74 7.55 -2.91 -0.02 2.72 16 9 C 0.24 11.72 0.85 -10.35 -0.01 11.71 16 10 O -0.59 -30.58 13.08 -148.98 -1.95 -32.53 16 11 C -0.13 -5.37 5.60 32.06 0.18 -5.19 16 12 C 0.11 3.78 6.69 86.93 0.58 4.37 16 13 N -0.61 -24.87 3.33 -811.35 -2.70 -27.57 16 14 C 0.54 21.47 7.63 87.66 0.67 22.14 16 15 O -0.60 -28.12 16.68 -3.06 -0.05 -28.17 16 16 C -0.17 -4.75 4.73 -11.54 -0.05 -4.80 16 17 H 0.14 3.42 4.88 -2.38 -0.01 3.41 16 18 C -0.13 -3.32 5.87 -9.31 -0.05 -3.37 16 19 H 0.10 2.87 7.82 -2.39 -0.02 2.86 16 20 C -0.13 -3.17 6.39 -8.42 -0.05 -3.22 16 21 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 22 C -0.06 -1.04 5.22 -6.50 -0.03 -1.08 16 23 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 24 C -0.12 -1.62 6.20 32.15 0.20 -1.42 16 25 C -0.11 -1.62 6.21 32.15 0.20 -1.42 16 26 C -0.07 -1.16 5.18 -7.38 -0.04 -1.19 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 C -0.13 -1.93 6.23 33.37 0.21 -1.72 16 29 C 0.13 6.15 6.22 86.73 0.54 6.69 16 30 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 31 H 0.38 19.57 7.21 -74.06 -0.53 19.03 16 32 H 0.08 3.57 7.65 -2.39 -0.02 3.55 16 33 H 0.06 2.58 8.04 -2.38 -0.02 2.56 16 34 H 0.10 2.72 7.00 -2.39 -0.02 2.71 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.92 8.04 -2.39 -0.02 0.90 16 40 H 0.07 1.14 5.90 -2.39 -0.01 1.13 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 2.86 7.64 -2.39 -0.02 2.84 16 43 H 0.04 2.04 8.07 -2.39 -0.02 2.02 16 Total: -1.00 -62.79 334.27 1.03 -61.76 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.48 Total: 34.96 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 2.99 Total: -6.27 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.47 Total: -73.23 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -2.00 Total: -60.71 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -62.79 1.03 -61.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.165 kcal (2) G-P(sol) polarization free energy of solvation -62.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds