Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 N 1.46904 * 109.46917 * 119.99610 * 2 1 3 5 5 C 1.46899 * 111.00228 * 294.95775 * 4 2 1 6 6 C 1.50704 * 109.47083 * 160.31868 * 5 4 2 7 7 H 1.07995 * 119.99837 * 4.02295 * 6 5 4 8 8 C 1.37879 * 119.99882 * 184.01839 * 6 5 4 9 9 N 1.31520 * 119.99937 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47128 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47366 * 119.99879 * 10 8 6 13 13 H 1.48500 * 109.47042 * 240.00102 * 10 8 6 14 14 C 1.46898 * 110.99891 * 170.99666 * 4 2 1 15 15 C 1.50696 * 109.47708 * 293.95708 * 14 4 2 16 16 C 1.34726 * 125.66612 * 90.01384 * 15 14 4 17 17 C 1.40952 * 107.02258 * 179.71664 * 16 15 14 18 18 C 1.35882 * 106.74104 * 0.40571 * 17 16 15 19 19 C 1.47890 * 125.92387 * 179.85438 * 18 17 16 20 20 N 1.34214 * 126.70456 * 359.74456 * 19 18 17 21 21 N 1.28977 * 107.25224 * 179.97438 * 20 19 18 22 22 N 1.28723 * 108.99762 * 0.02562 * 21 20 19 23 23 H 0.96998 * 125.31694 * 179.97438 * 22 21 20 24 24 N 1.28871 * 109.36441 * 359.97438 * 22 21 20 25 25 O 1.34292 * 125.66765 * 269.97455 * 15 14 4 26 26 H 1.09005 * 109.47400 * 306.05994 * 1 2 3 27 27 H 1.09001 * 109.47237 * 66.06138 * 1 2 3 28 28 H 1.09005 * 109.47416 * 186.05828 * 1 2 3 29 29 H 1.08998 * 109.47269 * 239.99792 * 2 1 3 30 30 H 1.08994 * 109.47257 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47091 * 300.00222 * 3 2 1 32 32 H 1.08998 * 109.47162 * 59.99726 * 3 2 1 33 33 H 1.09003 * 109.46776 * 280.31947 * 5 4 2 34 34 H 1.08995 * 109.47235 * 40.32060 * 5 4 2 35 35 H 0.96996 * 119.99726 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47078 * 173.95317 * 14 4 2 37 37 H 1.09004 * 109.46893 * 53.95884 * 14 4 2 38 38 H 1.08004 * 126.48728 * 0.02562 * 16 15 14 39 39 H 1.08003 * 126.62580 * 180.26315 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.6495 0.0398 2.4181 6 6 1.7210 -0.8885 3.6031 7 1 2.0743 -1.9009 3.4754 8 6 1.3352 -0.4450 4.8504 9 7 0.9045 0.7879 5.0058 10 14 1.4244 -1.5953 6.3194 11 1 1.9384 -2.9181 5.8819 12 1 2.3367 -1.0228 7.3418 13 1 0.0686 -1.7598 6.9024 14 6 3.4721 -0.9007 1.1311 15 6 3.7904 -1.8565 0.0103 16 6 4.0447 -1.5124 -1.2672 17 6 4.2969 -2.7058 -1.9736 18 6 4.1724 -3.7228 -1.0810 19 6 4.3467 -5.1616 -1.3752 20 7 4.6502 -5.7064 -2.5636 21 7 4.7106 -6.9836 -2.3946 22 7 4.4593 -7.2556 -1.1618 23 1 4.4419 -8.1454 -0.7762 24 7 4.2343 -6.1609 -0.5201 25 8 3.8684 -3.1928 0.1192 26 1 -0.3634 0.6049 0.8308 27 1 -0.3634 0.4170 -0.9393 28 1 -0.3634 -1.0220 0.1085 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.3387 0.8713 2.5657 34 1 0.6341 0.4230 2.3174 35 1 0.6335 1.0999 5.8833 36 1 3.8243 -1.3172 2.0748 37 1 3.9676 0.0526 0.9473 38 1 4.0582 -0.5113 -1.6721 39 1 4.5396 -2.7948 -3.0222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824289141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = 147.573490 kcal Electronic energy + Delta-G solvation = -22958.945731 eV Core-core repulsion = 19520.941445 eV Total energy + Delta-G solvation = -3438.004286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.61746 -42.43538 -37.85945 -34.64640 -33.62231 -32.98534 -32.73771 -31.64475 -29.70626 -27.23013 -26.55554 -25.25309 -24.72437 -23.17398 -22.44575 -21.56241 -20.35930 -19.31956 -18.73877 -17.36953 -17.17714 -16.66399 -15.91123 -15.15842 -14.75908 -14.38120 -14.19047 -14.10742 -13.48816 -13.18674 -12.94662 -12.76193 -12.52884 -12.31213 -12.09273 -11.80316 -11.61965 -11.55640 -11.29627 -11.25027 -11.12318 -10.91343 -10.84400 -10.57810 -10.48845 -10.29862 -9.78178 -9.59186 -9.24741 -8.43277 -8.17245 -7.32309 -6.03576 -4.04361 0.76187 1.17271 1.99013 2.34222 2.62769 2.87838 3.31078 3.39010 3.44918 3.76259 4.30416 4.42822 4.84297 4.99399 5.07261 5.19653 5.25624 5.32641 5.46568 5.61702 5.73880 5.84647 5.87267 5.94924 6.02406 6.10493 6.18408 6.23265 6.30065 6.34774 6.43558 6.59906 6.74713 6.82540 7.15086 7.27042 7.31133 7.80707 7.95434 8.05792 8.12256 8.50498 9.03911 9.60118 11.06757 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.004354 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.202864 B = 6429.330938 C = 7831.970038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 C -0.185 4.185 4 N -0.524 5.524 5 C 0.192 3.808 6 C -0.507 4.507 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.125 3.875 15 C 0.065 3.935 16 C -0.228 4.228 17 C -0.128 4.128 18 C 0.025 3.975 19 C 0.263 3.737 20 N -0.258 5.258 21 N -0.049 5.049 22 N -0.226 5.226 23 H 0.477 0.523 24 N -0.281 5.281 25 O -0.145 6.145 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.065 0.935 33 H -0.005 1.005 34 H 0.044 0.956 35 H 0.260 0.740 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.154 0.846 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -8.336 -13.548 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.041 4.041 3 C -0.244 4.244 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.546 4.546 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.003 4.003 15 C 0.011 3.989 16 C -0.248 4.248 17 C -0.150 4.150 18 C -0.029 4.029 19 C -0.016 4.016 20 N -0.132 5.132 21 N -0.044 5.044 22 N -0.073 5.073 23 H 0.331 0.669 24 N -0.133 5.133 25 O -0.039 6.039 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.013 0.987 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.172 0.828 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.365 -9.376 -13.470 17.603 hybrid contribution 0.257 0.081 1.262 1.291 sum 6.622 -9.295 -12.208 16.712 Atomic orbital electron populations 1.21795 0.94724 1.02418 1.00704 1.21768 0.95943 0.91999 0.94415 1.22482 1.00760 0.98910 1.02228 1.62352 1.08790 1.50248 1.03493 1.19827 0.96567 0.92258 0.84601 1.21251 1.42846 0.98755 0.91716 0.91808 1.24953 0.95397 0.95162 0.98934 1.69957 1.44546 1.15898 1.23462 0.86489 0.77630 0.81135 0.82490 1.19629 1.21144 1.21071 1.20651 0.91715 0.93131 0.94792 1.23111 0.98320 0.80062 0.97391 1.21550 1.10557 0.99695 0.93029 1.21719 1.02447 0.90557 1.00304 1.17726 1.13047 0.86862 0.85231 1.21968 1.01348 0.91864 0.86402 1.76118 1.17901 0.98136 1.21082 1.78890 1.14824 1.09758 1.00965 1.47701 1.43646 1.10515 1.05399 0.66879 1.75267 1.21118 0.92448 1.24486 1.84121 1.67818 1.21184 1.30771 0.91985 0.93508 0.92184 0.90901 0.93206 0.93077 0.91562 0.98746 0.93845 0.93009 0.87931 0.91680 0.82815 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.00 37.16 0.33 -2.01 16 2 C 0.07 1.16 2.77 -67.71 -0.19 0.97 16 3 C -0.18 -2.88 8.54 37.16 0.32 -2.56 16 4 N -0.52 -10.67 4.37 -229.52 -1.00 -11.67 16 5 C 0.19 4.67 3.38 -4.97 -0.02 4.65 16 6 C -0.51 -13.82 8.60 -34.44 -0.30 -14.11 16 7 H 0.06 1.76 7.68 -52.49 -0.40 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 10 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.12 2.27 5.19 -4.98 -0.03 2.24 16 15 C 0.07 1.08 6.24 -35.55 -0.22 0.86 16 16 C -0.23 -3.17 9.16 -39.80 -0.36 -3.54 16 17 C -0.13 -1.73 10.84 -39.40 -0.43 -2.15 16 18 C 0.02 0.38 7.26 -36.48 -0.26 0.12 16 19 C 0.26 3.85 8.20 -156.24 -1.28 2.57 16 20 N -0.26 -3.50 12.53 32.08 0.40 -3.10 16 21 N -0.05 -0.56 13.46 60.35 0.81 0.26 16 22 N -0.23 -2.13 7.90 60.35 0.48 -1.65 16 23 H 0.48 2.00 8.96 -340.33 -3.05 -1.05 16 24 N -0.28 -3.78 12.41 32.10 0.40 -3.38 16 25 O -0.15 -2.59 10.67 4.71 0.05 -2.54 16 26 H 0.06 1.15 6.47 -51.93 -0.34 0.81 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.16 5.83 -51.93 -0.30 0.86 16 30 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.18 6.79 -51.93 -0.35 0.82 16 33 H -0.01 -0.13 7.32 -51.93 -0.38 -0.51 16 34 H 0.04 1.13 5.92 -51.93 -0.31 0.83 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.10 2.03 7.34 -51.93 -0.38 1.65 16 37 H 0.07 1.07 6.35 -51.93 -0.33 0.74 16 38 H 0.15 1.79 8.05 -52.48 -0.42 1.37 16 39 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -31.58 328.15 -8.17 -39.75 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.43 Total: -2.33 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.53 Total: -11.49 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 1.82 Total: -44.76 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.05 Total: -2.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.58 -8.17 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824289141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.321 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds