Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 N 1.46904 * 109.46917 * 119.99610 * 2 1 3 5 5 C 1.46899 * 111.00228 * 294.95775 * 4 2 1 6 6 C 1.50704 * 109.47083 * 160.31868 * 5 4 2 7 7 H 1.07995 * 119.99837 * 4.02295 * 6 5 4 8 8 C 1.37879 * 119.99882 * 184.01839 * 6 5 4 9 9 N 1.31520 * 119.99937 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47128 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47366 * 119.99879 * 10 8 6 13 13 H 1.48500 * 109.47042 * 240.00102 * 10 8 6 14 14 C 1.46898 * 110.99891 * 170.99666 * 4 2 1 15 15 C 1.50696 * 109.47708 * 293.95708 * 14 4 2 16 16 C 1.34726 * 125.66612 * 90.01384 * 15 14 4 17 17 C 1.40952 * 107.02258 * 179.71664 * 16 15 14 18 18 C 1.35882 * 106.74104 * 0.40571 * 17 16 15 19 19 C 1.47890 * 125.92387 * 179.85438 * 18 17 16 20 20 N 1.34214 * 126.70456 * 359.74456 * 19 18 17 21 21 N 1.28977 * 107.25224 * 179.97438 * 20 19 18 22 22 N 1.28723 * 108.99762 * 0.02562 * 21 20 19 23 23 H 0.96998 * 125.31694 * 179.97438 * 22 21 20 24 24 N 1.28871 * 109.36441 * 359.97438 * 22 21 20 25 25 O 1.34292 * 125.66765 * 269.97455 * 15 14 4 26 26 H 1.09005 * 109.47400 * 306.05994 * 1 2 3 27 27 H 1.09001 * 109.47237 * 66.06138 * 1 2 3 28 28 H 1.09005 * 109.47416 * 186.05828 * 1 2 3 29 29 H 1.08998 * 109.47269 * 239.99792 * 2 1 3 30 30 H 1.08994 * 109.47257 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47091 * 300.00222 * 3 2 1 32 32 H 1.08998 * 109.47162 * 59.99726 * 3 2 1 33 33 H 1.09003 * 109.46776 * 280.31947 * 5 4 2 34 34 H 1.08995 * 109.47235 * 40.32060 * 5 4 2 35 35 H 0.96996 * 119.99726 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47078 * 173.95317 * 14 4 2 37 37 H 1.09004 * 109.46893 * 53.95884 * 14 4 2 38 38 H 1.08004 * 126.48728 * 0.02562 * 16 15 14 39 39 H 1.08003 * 126.62580 * 180.26315 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.6495 0.0398 2.4181 6 6 1.7210 -0.8885 3.6031 7 1 2.0743 -1.9009 3.4754 8 6 1.3352 -0.4450 4.8504 9 7 0.9045 0.7879 5.0058 10 14 1.4244 -1.5953 6.3194 11 1 1.9384 -2.9181 5.8819 12 1 2.3367 -1.0228 7.3418 13 1 0.0686 -1.7598 6.9024 14 6 3.4721 -0.9007 1.1311 15 6 3.7904 -1.8565 0.0103 16 6 4.0447 -1.5124 -1.2672 17 6 4.2969 -2.7058 -1.9736 18 6 4.1724 -3.7228 -1.0810 19 6 4.3467 -5.1616 -1.3752 20 7 4.6502 -5.7064 -2.5636 21 7 4.7106 -6.9836 -2.3946 22 7 4.4593 -7.2556 -1.1618 23 1 4.4419 -8.1454 -0.7762 24 7 4.2343 -6.1609 -0.5201 25 8 3.8684 -3.1928 0.1192 26 1 -0.3634 0.6049 0.8308 27 1 -0.3634 0.4170 -0.9393 28 1 -0.3634 -1.0220 0.1085 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.3387 0.8713 2.5657 34 1 0.6341 0.4230 2.3174 35 1 0.6335 1.0999 5.8833 36 1 3.8243 -1.3172 2.0748 37 1 3.9676 0.0526 0.9473 38 1 4.0582 -0.5113 -1.6721 39 1 4.5396 -2.7948 -3.0222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824289141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = 125.356833 kcal Electronic energy + Delta-G solvation = -22959.909117 eV Core-core repulsion = 19520.941445 eV Total energy + Delta-G solvation = -3438.967673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.57766 -43.62466 -39.38262 -35.61810 -34.89241 -34.62936 -34.06588 -33.00874 -31.18761 -28.82733 -27.93065 -26.74251 -25.68948 -24.45546 -24.14205 -22.69780 -21.53991 -20.28569 -20.19692 -18.68142 -18.33890 -18.24175 -17.26928 -16.65890 -16.54155 -15.76174 -15.72159 -15.20136 -14.86668 -14.66310 -14.11777 -14.04583 -13.85707 -13.75001 -13.51866 -13.20984 -12.91974 -12.90714 -12.67647 -12.55743 -12.42028 -12.30115 -12.28647 -12.18539 -12.10028 -11.98740 -11.30790 -11.24646 -10.81898 -10.55548 -9.35898 -8.92431 -8.16396 -6.24623 -0.25399 0.15329 1.12503 1.20561 1.39520 1.41377 1.54052 1.62224 1.79110 2.42166 2.73367 3.14684 3.21633 3.40335 3.80591 4.02337 4.06561 4.11938 4.26681 4.29216 4.40930 4.51731 4.63500 4.76749 4.83561 4.90651 4.95564 4.99002 5.00687 5.11629 5.19462 5.37195 5.43535 5.50449 5.51120 5.51879 5.70997 6.06901 6.14308 6.39226 6.69187 6.90974 6.98151 7.44262 8.93219 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.004354 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.202864 B = 6429.330938 C = 7831.970038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 C -0.177 4.177 4 N -0.540 5.540 5 C 0.212 3.788 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.131 3.869 15 C 0.036 3.964 16 C -0.203 4.203 17 C -0.117 4.117 18 C 0.011 3.989 19 C 0.247 3.753 20 N -0.269 5.269 21 N -0.042 5.042 22 N -0.195 5.195 23 H 0.497 0.503 24 N -0.300 5.300 25 O -0.175 6.175 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.035 0.965 33 H -0.024 1.024 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.183 0.817 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -9.121 -15.389 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 C -0.236 4.236 4 N -0.264 5.264 5 C 0.087 3.913 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.195 1.195 12 H -0.203 1.203 13 H -0.205 1.205 14 C 0.003 3.997 15 C -0.017 4.017 16 C -0.223 4.223 17 C -0.139 4.139 18 C -0.042 4.042 19 C -0.032 4.032 20 N -0.143 5.143 21 N -0.038 5.038 22 N -0.047 5.047 23 H 0.356 0.644 24 N -0.153 5.153 25 O -0.071 6.071 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.054 0.946 33 H -0.007 1.007 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.200 0.800 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.082 -10.183 -15.329 19.719 hybrid contribution 0.061 0.200 1.760 1.772 sum 7.142 -9.984 -13.569 18.298 Atomic orbital electron populations 1.21781 0.94843 1.01245 1.01472 1.21894 0.95900 0.92976 0.93446 1.22387 1.01415 0.97566 1.02186 1.62199 1.10670 1.50323 1.03245 1.19372 0.94776 0.91270 0.85884 1.21545 1.42568 0.98681 0.93224 0.92927 1.25727 0.95067 0.96585 1.01608 1.70058 1.45379 1.17402 1.24215 0.85509 0.77803 0.79140 0.79227 1.19521 1.20264 1.20530 1.20470 0.90318 0.94356 0.94526 1.22834 1.01279 0.79726 0.97901 1.21851 1.07817 1.01073 0.91522 1.22056 1.01069 0.89554 1.01220 1.18150 1.13241 0.87876 0.84943 1.21992 1.02367 0.91864 0.86962 1.76107 1.18546 0.98757 1.20870 1.78826 1.14498 1.09049 1.01385 1.47723 1.41508 1.10786 1.04668 0.64372 1.75216 1.21640 0.93275 1.25183 1.84065 1.68787 1.21888 1.32321 0.94515 0.90049 0.93610 0.88834 0.92065 0.90061 0.94574 1.00680 0.96117 0.92784 0.90828 0.89963 0.79961 0.79694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.00 71.98 0.65 -3.88 16 2 C 0.07 2.18 2.77 44.91 0.12 2.31 16 3 C -0.18 -5.23 8.54 71.98 0.61 -4.62 16 4 N -0.54 -22.36 4.37 -880.07 -3.85 -26.21 16 5 C 0.21 10.78 3.38 85.56 0.29 11.06 16 6 C -0.52 -29.43 8.60 25.60 0.22 -29.21 16 7 H 0.05 3.02 7.68 -2.91 -0.02 3.00 16 8 C 0.01 0.47 5.46 84.65 0.46 0.93 16 9 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.13 4.80 5.19 85.56 0.44 5.25 16 15 C 0.04 1.15 6.24 24.88 0.16 1.31 16 16 C -0.20 -5.08 9.16 22.13 0.20 -4.88 16 17 C -0.12 -2.85 10.84 22.39 0.24 -2.61 16 18 C 0.01 0.32 7.26 24.28 0.18 0.49 16 19 C 0.25 6.96 8.20 137.10 1.12 8.08 16 20 N -0.27 -6.84 12.53 -52.42 -0.66 -7.49 16 21 N -0.04 -0.88 13.46 37.02 0.50 -0.38 16 22 N -0.20 -3.33 7.90 37.02 0.29 -3.03 16 23 H 0.50 3.14 8.96 -347.51 -3.11 0.02 16 24 N -0.30 -7.76 12.41 -52.37 -0.65 -8.41 16 25 O -0.18 -6.28 10.67 -6.08 -0.06 -6.34 16 26 H 0.04 1.39 6.47 -2.38 -0.02 1.37 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.09 2.74 5.83 -2.39 -0.01 2.72 16 30 H 0.06 1.65 6.54 -2.39 -0.02 1.64 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.28 6.79 -2.39 -0.02 1.26 16 33 H -0.02 -1.31 7.32 -2.39 -0.02 -1.33 16 34 H 0.02 1.14 5.92 -2.39 -0.01 1.13 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.07 3.07 7.34 -2.39 -0.02 3.05 16 37 H 0.08 2.67 6.35 -2.38 -0.02 2.65 16 38 H 0.18 3.44 8.05 -2.91 -0.02 3.42 16 39 H 0.19 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -69.95 328.15 0.57 -69.38 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -2.02 Total: 6.13 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.70 Total: -15.76 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -4.08 Total: -100.20 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.06 Total: -6.34 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.95 0.57 -69.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824289141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.738 kcal (2) G-P(sol) polarization free energy of solvation -69.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds