Wall clock time and date at job start Tue Mar 31 2020 07:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00322 * 2 1 4 4 H 1.48504 * 109.47204 * 265.07864 * 3 2 1 5 5 H 1.48503 * 109.47227 * 25.07594 * 3 2 1 6 6 H 1.48497 * 109.47441 * 145.07721 * 3 2 1 7 7 C 1.37881 * 119.99580 * 180.27731 * 2 1 3 8 8 H 1.07994 * 120.00021 * 352.47209 * 7 2 1 9 9 C 1.50696 * 119.99843 * 172.47067 * 7 2 1 10 10 O 1.42901 * 110.27460 * 324.85412 * 9 7 2 11 11 C 1.54602 * 110.31058 * 202.76205 * 9 7 2 12 12 C 1.55100 * 102.84408 * 219.19033 * 11 9 7 13 13 N 1.48528 * 103.28619 * 37.30219 * 12 11 9 14 14 C 1.46901 * 110.99636 * 200.33418 * 13 12 11 15 15 C 1.53007 * 109.47148 * 287.39288 * 14 13 12 16 16 C 1.53002 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47241 * 305.00543 * 16 15 14 18 18 O 1.42899 * 109.46627 * 65.00428 * 16 15 14 19 19 C 1.50696 * 109.46867 * 185.00533 * 16 15 14 20 20 C 1.38234 * 120.00152 * 279.72260 * 19 16 15 21 21 C 1.38234 * 120.00318 * 179.76632 * 20 19 16 22 22 C 1.38235 * 119.99466 * 0.51319 * 21 20 19 23 23 C 1.38236 * 120.00447 * 359.74594 * 22 21 20 24 24 C 1.38232 * 119.99896 * 100.00639 * 19 16 15 25 25 C 1.47897 * 105.82388 * 320.84854 * 13 12 11 26 26 H 0.96996 * 119.99907 * 359.72525 * 1 2 3 27 27 H 0.96707 * 113.99879 * 295.26613 * 10 9 7 28 28 H 1.09001 * 110.72040 * 337.48879 * 11 9 7 29 29 H 1.08992 * 110.72175 * 100.76737 * 11 9 7 30 30 H 1.09003 * 110.58593 * 278.87065 * 12 11 9 31 31 H 1.08997 * 110.82605 * 155.85436 * 12 11 9 32 32 H 1.08994 * 109.47808 * 47.39662 * 14 13 12 33 33 H 1.09004 * 109.46821 * 167.40280 * 14 13 12 34 34 H 1.09000 * 109.47498 * 300.00921 * 15 14 13 35 35 H 1.09004 * 109.46450 * 60.00764 * 15 14 13 36 36 H 0.96694 * 113.99870 * 60.00562 * 18 16 15 37 37 H 1.08007 * 119.99581 * 0.02562 * 20 19 16 38 38 H 1.08002 * 120.00350 * 180.23628 * 21 20 19 39 39 H 1.08002 * 119.99762 * 179.71808 * 22 21 20 40 40 H 1.07997 * 120.00326 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00341 * 359.97438 * 24 19 16 42 42 H 1.09005 * 109.91761 * 265.97592 * 25 13 12 43 43 H 1.08995 * 109.91782 * 144.68514 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6008 1.9862 -1.3949 5 1 1.3985 2.6804 0.5934 6 1 3.4908 1.4723 0.8015 7 6 2.0045 -1.1941 -0.0058 8 1 1.4714 -2.1259 0.1122 9 6 3.5017 -1.1990 -0.1768 10 8 3.9021 -0.1534 -1.0648 11 6 3.9761 -2.5693 -0.7129 12 6 5.2918 -2.8100 0.0724 13 7 4.9903 -2.2622 1.4196 14 6 6.2264 -1.9580 2.1529 15 6 6.8941 -3.2632 2.5906 16 6 8.1811 -2.9464 3.3548 17 1 8.8226 -2.3148 2.7402 18 8 7.8589 -2.2616 4.5670 19 6 8.9016 -4.2296 3.6790 20 6 8.4978 -4.9959 4.7564 21 6 9.1556 -6.1754 5.0509 22 6 10.2240 -6.5834 4.2744 23 6 10.6313 -5.8145 3.2002 24 6 9.9700 -4.6375 2.9026 25 6 4.1961 -1.0363 1.1880 26 1 -0.4850 0.8400 0.0040 27 1 3.5794 -0.2611 -1.9701 28 1 3.2451 -3.3457 -0.4874 29 1 4.1684 -2.5186 -1.7845 30 1 6.1175 -2.2671 -0.3877 31 1 5.5185 -3.8744 0.1316 32 1 6.9050 -1.4018 1.5062 33 1 5.9892 -1.3587 3.0319 34 1 6.2155 -3.8195 3.2373 35 1 7.1313 -3.8625 1.7115 36 1 7.2894 -2.7657 5.1640 37 1 7.6656 -4.6750 5.3655 38 1 8.8377 -6.7760 5.8903 39 1 10.7409 -7.5027 4.5072 40 1 11.4662 -6.1330 2.5938 41 1 10.2882 -4.0368 2.0634 42 1 4.8527 -0.1664 1.1692 43 1 3.4490 -0.9239 1.9737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829997900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:38 Heat of formation + Delta-G solvation = -71.853802 kcal Electronic energy + Delta-G solvation = -23192.697962 eV Core-core repulsion = 19816.426187 eV Total energy + Delta-G solvation = -3376.271775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93219 -38.73474 -37.24622 -35.35452 -32.58227 -32.24130 -31.26527 -31.10332 -28.91427 -28.15592 -25.43591 -23.90532 -22.89421 -22.28018 -21.13555 -20.40846 -19.52584 -17.77901 -17.18621 -16.27408 -15.99390 -15.75552 -15.13250 -15.06483 -14.83671 -14.60672 -14.13353 -13.82150 -13.61352 -13.39146 -13.15782 -12.86898 -12.47906 -12.35132 -12.19232 -11.99260 -11.72878 -11.46260 -11.35760 -11.20398 -10.87995 -10.70216 -10.57456 -10.47131 -10.17728 -10.08984 -9.97578 -9.18651 -9.14071 -8.96943 -8.60322 -8.36906 -7.87871 -6.10750 -4.19423 1.06453 1.13465 3.48587 3.50219 3.55178 3.71854 4.20829 4.32932 4.55539 4.56781 4.59072 4.72996 4.84142 5.01556 5.10030 5.15318 5.21264 5.22656 5.33887 5.39702 5.56724 5.58569 5.70487 5.75415 5.79249 5.82761 5.97492 6.10514 6.14787 6.18785 6.23717 6.24709 6.31887 6.37118 6.54915 6.70215 6.71955 6.87462 7.18796 7.43376 7.45657 7.61463 7.65224 8.24110 8.75352 8.93472 9.52560 10.98914 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031738 B = 0.003161 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.002430 B = 8856.533711 C = 9032.111961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.943 3.057 4 H -0.291 1.291 5 H -0.324 1.324 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.213 3.787 10 O -0.572 6.572 11 C -0.136 4.136 12 C 0.035 3.965 13 N -0.515 5.515 14 C 0.050 3.950 15 C -0.137 4.137 16 C 0.147 3.853 17 H 0.105 0.895 18 O -0.553 6.553 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.112 4.112 25 C 0.053 3.947 26 H 0.265 0.735 27 H 0.370 0.630 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.374 0.626 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.035 0.965 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.809 -10.834 6.592 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.132 4.132 3 Si 0.777 3.223 4 H -0.218 1.218 5 H -0.255 1.255 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.173 3.827 10 O -0.380 6.380 11 C -0.174 4.174 12 C -0.093 4.093 13 N -0.239 5.239 14 C -0.078 4.078 15 C -0.175 4.175 16 C 0.087 3.913 17 H 0.123 0.877 18 O -0.359 6.359 19 C -0.110 4.110 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.074 4.074 26 H 0.074 0.926 27 H 0.218 0.782 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.222 0.778 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.054 0.946 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.007 -10.434 7.187 23.681 hybrid contribution 0.252 0.668 -0.764 1.046 sum 20.260 -9.766 6.423 23.390 Atomic orbital electron populations 1.69981 1.06768 1.27542 1.48565 1.25117 0.94826 1.00325 0.92956 0.85813 0.77913 0.80515 0.78033 1.21823 1.25514 1.19816 1.21330 0.89173 0.95128 1.52671 0.90321 1.20004 0.94261 0.82624 0.85789 1.86121 1.78169 1.50196 1.23473 1.23144 0.95750 1.00488 0.98067 1.23228 0.97455 0.99027 0.89552 1.64788 1.16095 1.27023 1.16002 1.22190 0.91148 0.95809 0.98678 1.22217 0.95638 0.98678 1.00948 1.20877 0.94812 0.89579 0.86031 0.87748 1.86619 1.72103 1.46303 1.30904 1.20628 0.96653 0.97551 0.96131 1.20909 0.99938 0.94856 0.97243 1.21133 0.96137 0.96507 0.99755 1.21169 0.97384 0.99856 0.95814 1.21151 0.99930 0.94992 0.97620 1.21023 0.95465 0.96963 0.99523 1.23256 0.96020 0.89276 0.98890 0.92611 0.78210 0.90454 0.92107 0.94664 0.91381 0.95176 0.90482 0.90587 0.91028 0.77804 0.86088 0.85973 0.86148 0.86022 0.85938 0.94640 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.94 24.07 24.82 -169.99 -4.22 19.85 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.32 -8.43 7.11 56.52 0.40 -8.03 16 6 H -0.27 -6.90 5.84 56.52 0.33 -6.57 16 7 C -0.55 -14.99 8.55 -34.44 -0.29 -15.28 16 8 H 0.08 2.36 7.81 -52.49 -0.41 1.95 16 9 C 0.21 4.90 0.84 -90.41 -0.08 4.83 16 10 O -0.57 -12.87 8.71 -35.23 -0.31 -13.18 16 11 C -0.14 -2.66 6.34 -24.78 -0.16 -2.82 16 12 C 0.04 0.61 5.91 -1.81 -0.01 0.59 16 13 N -0.51 -9.50 5.25 -230.35 -1.21 -10.71 16 14 C 0.05 0.77 4.60 -3.82 -0.02 0.75 16 15 C -0.14 -1.66 4.96 -26.73 -0.13 -1.79 16 16 C 0.15 1.58 3.21 -27.88 -0.09 1.49 16 17 H 0.10 1.12 8.00 -51.93 -0.42 0.71 16 18 O -0.55 -6.31 12.72 -35.23 -0.45 -6.76 16 19 C -0.11 -1.10 4.97 -104.63 -0.52 -1.63 16 20 C -0.11 -1.04 9.32 -39.58 -0.37 -1.41 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 25 C 0.05 1.17 4.95 -2.76 -0.01 1.15 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.37 7.31 9.01 45.56 0.41 7.72 16 28 H 0.08 1.58 7.69 -51.93 -0.40 1.18 16 29 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 30 H 0.04 0.59 7.81 -51.93 -0.41 0.18 16 31 H 0.07 1.04 7.80 -51.93 -0.40 0.64 16 32 H 0.03 0.47 7.83 -51.93 -0.41 0.06 16 33 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.87 7.37 -51.93 -0.38 0.49 16 36 H 0.37 3.13 7.50 45.56 0.34 3.47 16 37 H 0.12 0.92 6.78 -52.48 -0.36 0.56 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.99 8.04 -52.49 -0.42 0.56 16 42 H 0.04 0.80 6.99 -51.93 -0.36 0.43 16 43 H 0.09 2.12 7.68 -51.93 -0.40 1.72 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -32.41 341.12 -8.95 -41.36 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.33 Total: 8.47 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.35 Total: -17.82 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.43 Total: -37.06 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.76 Total: -19.93 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.22 Total: 19.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.41 -8.95 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829997900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.497 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds