Wall clock time and date at job start Tue Mar 31 2020 07:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00322 * 2 1 4 4 H 1.48504 * 109.47204 * 265.07864 * 3 2 1 5 5 H 1.48503 * 109.47227 * 25.07594 * 3 2 1 6 6 H 1.48497 * 109.47441 * 145.07721 * 3 2 1 7 7 C 1.37881 * 119.99580 * 180.27731 * 2 1 3 8 8 H 1.07994 * 120.00021 * 352.47209 * 7 2 1 9 9 C 1.50696 * 119.99843 * 172.47067 * 7 2 1 10 10 O 1.42901 * 110.27460 * 324.85412 * 9 7 2 11 11 C 1.54602 * 110.31058 * 202.76205 * 9 7 2 12 12 C 1.55100 * 102.84408 * 219.19033 * 11 9 7 13 13 N 1.48528 * 103.28619 * 37.30219 * 12 11 9 14 14 C 1.46901 * 110.99636 * 200.33418 * 13 12 11 15 15 C 1.53007 * 109.47148 * 287.39288 * 14 13 12 16 16 C 1.53002 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47241 * 305.00543 * 16 15 14 18 18 O 1.42899 * 109.46627 * 65.00428 * 16 15 14 19 19 C 1.50696 * 109.46867 * 185.00533 * 16 15 14 20 20 C 1.38234 * 120.00152 * 279.72260 * 19 16 15 21 21 C 1.38234 * 120.00318 * 179.76632 * 20 19 16 22 22 C 1.38235 * 119.99466 * 0.51319 * 21 20 19 23 23 C 1.38236 * 120.00447 * 359.74594 * 22 21 20 24 24 C 1.38232 * 119.99896 * 100.00639 * 19 16 15 25 25 C 1.47897 * 105.82388 * 320.84854 * 13 12 11 26 26 H 0.96996 * 119.99907 * 359.72525 * 1 2 3 27 27 H 0.96707 * 113.99879 * 295.26613 * 10 9 7 28 28 H 1.09001 * 110.72040 * 337.48879 * 11 9 7 29 29 H 1.08992 * 110.72175 * 100.76737 * 11 9 7 30 30 H 1.09003 * 110.58593 * 278.87065 * 12 11 9 31 31 H 1.08997 * 110.82605 * 155.85436 * 12 11 9 32 32 H 1.08994 * 109.47808 * 47.39662 * 14 13 12 33 33 H 1.09004 * 109.46821 * 167.40280 * 14 13 12 34 34 H 1.09000 * 109.47498 * 300.00921 * 15 14 13 35 35 H 1.09004 * 109.46450 * 60.00764 * 15 14 13 36 36 H 0.96694 * 113.99870 * 60.00562 * 18 16 15 37 37 H 1.08007 * 119.99581 * 0.02562 * 20 19 16 38 38 H 1.08002 * 120.00350 * 180.23628 * 21 20 19 39 39 H 1.08002 * 119.99762 * 179.71808 * 22 21 20 40 40 H 1.07997 * 120.00326 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00341 * 359.97438 * 24 19 16 42 42 H 1.09005 * 109.91761 * 265.97592 * 25 13 12 43 43 H 1.08995 * 109.91782 * 144.68514 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6008 1.9862 -1.3949 5 1 1.3985 2.6804 0.5934 6 1 3.4908 1.4723 0.8015 7 6 2.0045 -1.1941 -0.0058 8 1 1.4714 -2.1259 0.1122 9 6 3.5017 -1.1990 -0.1768 10 8 3.9021 -0.1534 -1.0648 11 6 3.9761 -2.5693 -0.7129 12 6 5.2918 -2.8100 0.0724 13 7 4.9903 -2.2622 1.4196 14 6 6.2264 -1.9580 2.1529 15 6 6.8941 -3.2632 2.5906 16 6 8.1811 -2.9464 3.3548 17 1 8.8226 -2.3148 2.7402 18 8 7.8589 -2.2616 4.5670 19 6 8.9016 -4.2296 3.6790 20 6 8.4978 -4.9959 4.7564 21 6 9.1556 -6.1754 5.0509 22 6 10.2240 -6.5834 4.2744 23 6 10.6313 -5.8145 3.2002 24 6 9.9700 -4.6375 2.9026 25 6 4.1961 -1.0363 1.1880 26 1 -0.4850 0.8400 0.0040 27 1 3.5794 -0.2611 -1.9701 28 1 3.2451 -3.3457 -0.4874 29 1 4.1684 -2.5186 -1.7845 30 1 6.1175 -2.2671 -0.3877 31 1 5.5185 -3.8744 0.1316 32 1 6.9050 -1.4018 1.5062 33 1 5.9892 -1.3587 3.0319 34 1 6.2155 -3.8195 3.2373 35 1 7.1313 -3.8625 1.7115 36 1 7.2894 -2.7657 5.1640 37 1 7.6656 -4.6750 5.3655 38 1 8.8377 -6.7760 5.8903 39 1 10.7409 -7.5027 4.5072 40 1 11.4662 -6.1330 2.5938 41 1 10.2882 -4.0368 2.0634 42 1 4.8527 -0.1664 1.1692 43 1 3.4490 -0.9239 1.9737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829997900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:37 Heat of formation + Delta-G solvation = -97.034710 kcal Electronic energy + Delta-G solvation = -23193.789888 eV Core-core repulsion = 19816.426187 eV Total energy + Delta-G solvation = -3377.363701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73876 -40.21434 -38.15081 -36.90647 -34.44232 -33.63718 -32.28007 -31.73553 -30.20969 -29.88659 -26.82306 -25.48095 -23.62897 -23.32699 -21.95933 -21.76109 -21.30947 -19.24032 -18.49072 -17.36262 -17.09925 -16.85647 -16.74802 -16.45191 -16.01878 -15.71676 -15.37214 -15.05016 -14.64049 -14.59243 -14.22814 -14.10533 -13.97994 -13.78787 -13.72738 -13.45071 -12.90059 -12.73998 -12.60108 -12.36114 -12.17741 -12.10015 -12.03678 -11.94339 -11.77617 -11.61706 -11.21043 -10.99826 -10.68192 -10.30535 -9.81914 -9.64673 -9.34933 -8.34257 -6.44471 0.40827 0.50227 1.44804 1.47513 1.66959 2.42558 2.79564 2.99131 3.01347 3.54252 3.61446 3.65733 3.90156 3.95462 4.06857 4.15136 4.19281 4.26028 4.28914 4.31953 4.43311 4.46949 4.58777 4.66109 4.68170 4.73876 4.76374 4.96357 5.02788 5.06116 5.08327 5.15591 5.22270 5.29069 5.38644 5.56332 5.62282 5.62646 5.66920 5.93453 6.09090 6.10735 6.19966 6.62294 6.74550 7.00872 7.33185 8.79559 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031738 B = 0.003161 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.002430 B = 8856.533711 C = 9032.111961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.023 3.977 3 Si 1.001 2.999 4 H -0.277 1.277 5 H -0.332 1.332 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.040 0.960 9 C 0.208 3.792 10 O -0.573 6.573 11 C -0.133 4.133 12 C 0.044 3.956 13 N -0.522 5.522 14 C 0.052 3.948 15 C -0.123 4.123 16 C 0.155 3.845 17 H 0.104 0.896 18 O -0.569 6.569 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.125 4.125 25 C 0.060 3.940 26 H 0.266 0.734 27 H 0.382 0.618 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.385 0.615 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.031 0.969 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.603 -11.683 6.416 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.176 4.176 3 Si 0.834 3.166 4 H -0.204 1.204 5 H -0.264 1.264 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.058 0.942 9 C 0.168 3.832 10 O -0.382 6.382 11 C -0.171 4.171 12 C -0.084 4.084 13 N -0.247 5.247 14 C -0.076 4.076 15 C -0.161 4.161 16 C 0.096 3.904 17 H 0.122 0.878 18 O -0.377 6.377 19 C -0.124 4.124 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.069 4.069 26 H 0.075 0.925 27 H 0.232 0.768 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.235 0.765 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.049 0.951 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.820 -11.306 7.000 26.412 hybrid contribution -0.623 0.821 -0.678 1.234 sum 22.197 -10.485 6.322 25.350 Atomic orbital electron populations 1.70094 1.08370 1.28306 1.51011 1.25842 0.95294 1.03463 0.93016 0.84850 0.76467 0.76725 0.78533 1.20402 1.26437 1.19492 1.21597 0.91855 0.93382 1.51159 0.94153 1.19941 0.91510 0.84877 0.86869 1.86070 1.77789 1.50073 1.24306 1.23053 0.96641 0.97592 0.99797 1.23244 0.96230 1.00673 0.88214 1.64758 1.17703 1.25129 1.17113 1.22238 0.89888 0.97580 0.97926 1.22093 0.96010 0.96768 1.01239 1.20745 0.94017 0.90029 0.85627 0.87788 1.86586 1.72529 1.47162 1.31382 1.20601 0.97360 0.97445 0.97016 1.21152 1.00520 0.95228 0.97329 1.21436 0.96183 0.96481 1.00388 1.21518 0.97228 1.00541 0.95451 1.21453 1.00372 0.94694 0.97956 1.21257 0.95514 0.97600 0.99901 1.22942 0.95805 0.90844 0.97281 0.92547 0.76808 0.91972 0.89853 0.93367 0.88798 0.94896 0.91358 0.90762 0.90488 0.76492 0.85029 0.84230 0.84074 0.84112 0.84978 0.95091 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 2 C 0.02 1.33 5.46 84.66 0.46 1.80 16 3 Si 1.00 49.83 24.82 68.60 1.70 51.53 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.33 -16.90 7.11 99.48 0.71 -16.19 16 6 H -0.27 -13.15 5.84 99.48 0.58 -12.57 16 7 C -0.54 -30.36 8.55 25.60 0.22 -30.14 16 8 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 9 C 0.21 9.41 0.84 -10.66 -0.01 9.40 16 10 O -0.57 -24.63 8.71 -148.98 -1.30 -25.92 16 11 C -0.13 -4.95 6.34 31.86 0.20 -4.75 16 12 C 0.04 1.38 5.91 86.71 0.51 1.89 16 13 N -0.52 -18.50 5.25 -882.68 -4.63 -23.13 16 14 C 0.05 1.50 4.60 86.31 0.40 1.89 16 15 C -0.12 -2.73 4.96 30.60 0.15 -2.58 16 16 C 0.16 3.08 3.21 29.85 0.10 3.18 16 17 H 0.10 2.05 8.00 -2.39 -0.02 2.03 16 18 O -0.57 -12.23 12.72 -148.98 -1.90 -14.13 16 19 C -0.12 -2.29 4.97 -19.87 -0.10 -2.38 16 20 C -0.12 -2.10 9.32 22.27 0.21 -1.89 16 21 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 22 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 23 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 24 C -0.12 -2.11 9.67 22.27 0.22 -1.89 16 25 C 0.06 2.59 4.95 86.45 0.43 3.01 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.38 14.22 9.01 -74.05 -0.67 13.55 16 28 H 0.06 2.50 7.69 -2.39 -0.02 2.48 16 29 H 0.08 2.71 8.01 -2.39 -0.02 2.69 16 30 H 0.05 1.43 7.81 -2.39 -0.02 1.41 16 31 H 0.09 2.52 7.80 -2.39 -0.02 2.51 16 32 H 0.03 0.94 7.83 -2.39 -0.02 0.92 16 33 H 0.07 2.09 7.76 -2.38 -0.02 2.07 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.65 7.37 -2.38 -0.02 1.63 16 36 H 0.39 5.99 7.50 -74.06 -0.56 5.44 16 37 H 0.13 1.79 6.78 -2.91 -0.02 1.77 16 38 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.13 1.86 8.04 -2.91 -0.02 1.83 16 42 H 0.03 1.36 6.99 -2.38 -0.02 1.34 16 43 H 0.06 2.98 7.68 -2.39 -0.02 2.96 16 Total: -1.00 -69.95 341.12 -2.70 -72.66 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.34 Total: 24.69 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.45 Total: -27.37 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -4.33 Total: -81.46 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -3.19 Total: -40.05 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.70 Total: 51.53 kcal Total: -69.95 -2.70 -72.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829997900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.379 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds