Wall clock time and date at job start Tue Mar 31 2020 07:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 110.27426 * 57.91020 * 9 7 2 11 11 C 1.54597 * 110.30708 * 295.71637 * 9 7 2 12 12 C 1.54937 * 102.92462 * 219.12443 * 11 9 7 13 13 N 1.48539 * 103.22274 * 37.41216 * 12 11 9 14 14 C 1.46900 * 110.99941 * 200.27849 * 13 12 11 15 15 C 1.53003 * 109.47089 * 287.39589 * 14 13 12 16 16 C 1.53001 * 109.46667 * 179.97438 * 15 14 13 17 17 H 1.08992 * 109.47318 * 55.00655 * 16 15 14 18 18 O 1.42895 * 109.47410 * 295.00050 * 16 15 14 19 19 C 1.50703 * 109.46853 * 175.00420 * 16 15 14 20 20 C 1.38240 * 120.00178 * 84.72758 * 19 16 15 21 21 C 1.38224 * 120.00142 * 179.78965 * 20 19 16 22 22 C 1.38244 * 119.99885 * 0.43908 * 21 20 19 23 23 C 1.38230 * 119.99881 * 359.81549 * 22 21 20 24 24 C 1.38233 * 120.00008 * 265.00116 * 19 16 15 25 25 C 1.47901 * 105.82046 * 320.79537 * 13 12 11 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 0.96703 * 114.00355 * 300.70114 * 10 9 7 28 28 H 1.09004 * 110.72659 * 337.48631 * 11 9 7 29 29 H 1.09005 * 110.72577 * 100.77084 * 11 9 7 30 30 H 1.09000 * 110.66656 * 278.98674 * 12 11 9 31 31 H 1.08998 * 110.81602 * 155.91435 * 12 11 9 32 32 H 1.08996 * 109.47167 * 47.40308 * 14 13 12 33 33 H 1.09002 * 109.46931 * 167.39937 * 14 13 12 34 34 H 1.08990 * 109.47315 * 300.00183 * 15 14 13 35 35 H 1.08997 * 109.46543 * 60.00599 * 15 14 13 36 36 H 0.96705 * 114.00344 * 300.00760 * 18 16 15 37 37 H 1.08003 * 119.99551 * 0.02562 * 20 19 16 38 38 H 1.07999 * 120.00475 * 180.27324 * 21 20 19 39 39 H 1.08000 * 119.99926 * 179.83535 * 22 21 20 40 40 H 1.08009 * 119.99792 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.99955 * 359.97438 * 24 19 16 42 42 H 1.08997 * 109.91359 * 265.97067 * 25 13 12 43 43 H 1.09004 * 109.91438 * 144.67975 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3820 -2.5692 -1.1380 11 6 0.4434 -2.6525 1.3035 12 6 0.6094 -4.1559 1.6391 13 7 2.0111 -4.4407 1.2383 14 6 2.2161 -5.8799 1.0270 15 6 2.2236 -6.5978 2.3782 16 6 2.4365 -8.0968 2.1580 17 1 3.3458 -8.2533 1.5778 18 8 1.3199 -8.6375 1.4489 19 6 2.5666 -8.7869 3.4914 20 6 1.4339 -9.1782 4.1806 21 6 1.5533 -9.8151 5.4016 22 6 2.8052 -10.0524 5.9378 23 6 3.9376 -9.6564 5.2512 24 6 3.8183 -9.0234 4.0281 25 6 2.2344 -3.6842 -0.0128 26 1 -0.4849 0.8401 0.0041 27 1 -0.2737 -1.8594 -1.1750 28 1 0.8672 -2.0319 2.0930 29 1 -0.6061 -2.4074 1.1403 30 1 -0.0872 -4.7592 1.0570 31 1 0.4710 -4.3323 2.7058 32 1 1.4092 -6.2751 0.4100 33 1 3.1699 -6.0411 0.5247 34 1 3.0305 -6.2025 2.9951 35 1 1.2698 -6.4366 2.8804 36 1 0.4749 -8.5335 1.9075 37 1 0.4558 -8.9898 3.7631 38 1 0.6685 -10.1248 5.9379 39 1 2.8984 -10.5476 6.8931 40 1 4.9157 -9.8422 5.6700 41 1 4.7031 -8.7141 3.4916 42 1 2.0390 -4.3239 -0.8734 43 1 3.2597 -3.3156 -0.0459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829997902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:42 Heat of formation + Delta-G solvation = -77.285625 kcal Electronic energy + Delta-G solvation = -23100.275483 eV Core-core repulsion = 19723.768166 eV Total energy + Delta-G solvation = -3376.507317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88584 -38.42546 -37.13455 -34.90013 -32.43573 -32.04233 -31.08715 -31.00437 -28.58715 -27.91530 -25.36921 -23.95699 -22.82654 -22.07197 -21.09731 -20.08016 -19.33330 -17.74511 -17.06296 -16.13499 -15.97833 -15.66369 -14.91638 -14.89082 -14.63595 -14.26088 -14.07342 -13.66644 -13.64239 -13.40549 -13.11872 -12.57538 -12.22833 -12.09690 -11.90830 -11.85090 -11.44485 -11.26843 -11.14488 -11.06014 -10.81349 -10.69070 -10.47268 -10.36354 -10.32961 -10.10256 -9.86482 -9.14482 -9.13651 -8.90572 -8.54990 -8.07556 -7.74531 -6.17161 -4.22776 1.11119 1.17858 3.25827 3.32636 3.36727 3.53308 4.28392 4.34626 4.36660 4.62631 4.67570 4.78252 4.88525 5.03503 5.10858 5.22512 5.27519 5.32114 5.52975 5.58376 5.73807 5.76657 5.80195 5.91607 6.00398 6.11914 6.22203 6.22771 6.27655 6.28974 6.30602 6.41160 6.50942 6.54211 6.76312 6.95833 7.09116 7.32444 7.47734 7.54265 7.69583 7.76400 7.88626 8.20180 8.78645 9.44075 9.56507 10.90706 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002974 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.663398 B = 9412.817129 C = 9659.645554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.595 6.595 11 C -0.119 4.119 12 C 0.032 3.968 13 N -0.516 5.516 14 C 0.050 3.950 15 C -0.136 4.136 16 C 0.146 3.854 17 H 0.108 0.892 18 O -0.554 6.554 19 C -0.108 4.108 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.111 4.111 25 C 0.055 3.945 26 H 0.266 0.734 27 H 0.383 0.617 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.372 0.628 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.035 0.965 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -17.603 9.741 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.157 4.157 12 C -0.096 4.096 13 N -0.240 5.240 14 C -0.078 4.078 15 C -0.174 4.174 16 C 0.087 3.913 17 H 0.125 0.875 18 O -0.360 6.360 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.073 4.073 26 H 0.076 0.924 27 H 0.234 0.766 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.220 0.780 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.054 0.946 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.028 -17.997 9.570 20.777 hybrid contribution -0.861 1.312 0.105 1.573 sum 3.167 -16.685 9.675 19.545 Atomic orbital electron populations 1.69621 1.05953 1.27341 1.51199 1.25020 0.95006 0.99459 0.93950 0.86457 0.79868 0.82708 0.78155 1.20576 1.21172 1.19769 1.21710 0.93522 0.90645 1.50609 0.92003 1.19351 0.86230 0.91582 0.82563 1.86090 1.50695 1.55276 1.48426 1.22983 1.00698 0.91580 1.00476 1.23301 0.88497 0.98916 0.98844 1.64770 1.23465 1.05609 1.30166 1.22163 1.00982 0.89158 0.95527 1.22206 1.03357 0.93100 0.98774 1.20898 0.90501 0.91327 0.88620 0.87477 1.86621 1.17745 1.82514 1.49110 1.20643 0.93811 0.98945 0.97481 1.20885 0.98091 0.98968 0.95146 1.21118 0.97602 0.99041 0.95807 1.21162 0.92726 1.00473 0.99940 1.21151 0.98671 0.98675 0.95148 1.21018 0.96906 0.98853 0.96118 1.22835 1.00448 0.94962 0.89038 0.92394 0.76563 0.91461 0.91817 0.94934 0.91984 0.94332 0.91504 0.90138 0.91573 0.77985 0.86227 0.86049 0.86183 0.86007 0.85796 0.94635 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 10.89 55.43 0.60 -23.73 16 2 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.37 8.10 -34.44 -0.28 -14.65 16 8 H 0.06 1.68 7.34 -52.49 -0.39 1.30 16 9 C 0.24 6.15 0.99 -90.42 -0.09 6.06 16 10 O -0.59 -15.87 12.92 -35.23 -0.46 -16.32 16 11 C -0.12 -2.79 5.50 -24.87 -0.14 -2.92 16 12 C 0.03 0.63 5.91 -1.89 -0.01 0.62 16 13 N -0.52 -10.05 5.24 -230.45 -1.21 -11.26 16 14 C 0.05 0.80 4.60 -3.82 -0.02 0.78 16 15 C -0.14 -1.75 4.97 -26.73 -0.13 -1.88 16 16 C 0.15 1.63 3.21 -27.88 -0.09 1.54 16 17 H 0.11 1.17 8.05 -51.93 -0.42 0.75 16 18 O -0.55 -6.54 12.67 -35.23 -0.45 -6.99 16 19 C -0.11 -1.14 5.00 -104.62 -0.52 -1.67 16 20 C -0.11 -1.10 9.33 -39.59 -0.37 -1.47 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 24 C -0.11 -1.09 9.68 -39.58 -0.38 -1.48 16 25 C 0.05 1.22 6.13 -2.76 -0.02 1.20 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.38 10.33 7.07 45.56 0.32 10.66 16 28 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 29 H 0.06 1.55 8.06 -51.93 -0.42 1.13 16 30 H 0.03 0.63 7.81 -51.93 -0.41 0.23 16 31 H 0.06 1.10 7.80 -51.93 -0.40 0.70 16 32 H 0.04 0.65 7.51 -51.93 -0.39 0.26 16 33 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.85 7.36 -51.93 -0.38 0.47 16 36 H 0.37 3.31 7.40 45.56 0.34 3.64 16 37 H 0.12 0.96 6.62 -52.48 -0.35 0.61 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.04 0.79 7.59 -51.93 -0.39 0.40 16 43 H 0.08 1.75 7.39 -51.93 -0.38 1.36 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -29.56 346.05 -10.00 -39.55 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.35 Total: 14.11 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -3.34 Total: -16.52 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.60 Total: -34.98 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.90 Total: -23.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.56 -10.00 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829997902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.733 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds