Wall clock time and date at job start Tue Mar 31 2020 07:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 110.27426 * 57.91020 * 9 7 2 11 11 C 1.54597 * 110.30708 * 295.71637 * 9 7 2 12 12 C 1.54937 * 102.92462 * 219.12443 * 11 9 7 13 13 N 1.48539 * 103.22274 * 37.41216 * 12 11 9 14 14 C 1.46900 * 110.99941 * 200.27849 * 13 12 11 15 15 C 1.53003 * 109.47089 * 287.39589 * 14 13 12 16 16 C 1.53001 * 109.46667 * 179.97438 * 15 14 13 17 17 H 1.08992 * 109.47318 * 55.00655 * 16 15 14 18 18 O 1.42895 * 109.47410 * 295.00050 * 16 15 14 19 19 C 1.50703 * 109.46853 * 175.00420 * 16 15 14 20 20 C 1.38240 * 120.00178 * 84.72758 * 19 16 15 21 21 C 1.38224 * 120.00142 * 179.78965 * 20 19 16 22 22 C 1.38244 * 119.99885 * 0.43908 * 21 20 19 23 23 C 1.38230 * 119.99881 * 359.81549 * 22 21 20 24 24 C 1.38233 * 120.00008 * 265.00116 * 19 16 15 25 25 C 1.47901 * 105.82046 * 320.79537 * 13 12 11 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 0.96703 * 114.00355 * 300.70114 * 10 9 7 28 28 H 1.09004 * 110.72659 * 337.48631 * 11 9 7 29 29 H 1.09005 * 110.72577 * 100.77084 * 11 9 7 30 30 H 1.09000 * 110.66656 * 278.98674 * 12 11 9 31 31 H 1.08998 * 110.81602 * 155.91435 * 12 11 9 32 32 H 1.08996 * 109.47167 * 47.40308 * 14 13 12 33 33 H 1.09002 * 109.46931 * 167.39937 * 14 13 12 34 34 H 1.08990 * 109.47315 * 300.00183 * 15 14 13 35 35 H 1.08997 * 109.46543 * 60.00599 * 15 14 13 36 36 H 0.96705 * 114.00344 * 300.00760 * 18 16 15 37 37 H 1.08003 * 119.99551 * 0.02562 * 20 19 16 38 38 H 1.07999 * 120.00475 * 180.27324 * 21 20 19 39 39 H 1.08000 * 119.99926 * 179.83535 * 22 21 20 40 40 H 1.08009 * 119.99792 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.99955 * 359.97438 * 24 19 16 42 42 H 1.08997 * 109.91359 * 265.97067 * 25 13 12 43 43 H 1.09004 * 109.91438 * 144.67975 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3820 -2.5692 -1.1380 11 6 0.4434 -2.6525 1.3035 12 6 0.6094 -4.1559 1.6391 13 7 2.0111 -4.4407 1.2383 14 6 2.2161 -5.8799 1.0270 15 6 2.2236 -6.5978 2.3782 16 6 2.4365 -8.0968 2.1580 17 1 3.3458 -8.2533 1.5778 18 8 1.3199 -8.6375 1.4489 19 6 2.5666 -8.7869 3.4914 20 6 1.4339 -9.1782 4.1806 21 6 1.5533 -9.8151 5.4016 22 6 2.8052 -10.0524 5.9378 23 6 3.9376 -9.6564 5.2512 24 6 3.8183 -9.0234 4.0281 25 6 2.2344 -3.6842 -0.0128 26 1 -0.4849 0.8401 0.0041 27 1 -0.2737 -1.8594 -1.1750 28 1 0.8672 -2.0319 2.0930 29 1 -0.6061 -2.4074 1.1403 30 1 -0.0872 -4.7592 1.0570 31 1 0.4710 -4.3323 2.7058 32 1 1.4092 -6.2751 0.4100 33 1 3.1699 -6.0411 0.5247 34 1 3.0305 -6.2025 2.9951 35 1 1.2698 -6.4366 2.8804 36 1 0.4749 -8.5335 1.9075 37 1 0.4558 -8.9898 3.7631 38 1 0.6685 -10.1248 5.9379 39 1 2.8984 -10.5476 6.8931 40 1 4.9157 -9.8422 5.6700 41 1 4.7031 -8.7141 3.4916 42 1 2.0390 -4.3239 -0.8734 43 1 3.2597 -3.3156 -0.0459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829997902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:41 Heat of formation + Delta-G solvation = -98.431748 kcal Electronic energy + Delta-G solvation = -23101.192448 eV Core-core repulsion = 19723.768166 eV Total energy + Delta-G solvation = -3377.424281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70017 -40.02813 -38.09290 -36.64225 -34.13095 -33.55482 -32.15334 -31.71901 -30.09551 -29.66921 -26.85969 -25.46737 -23.56554 -23.25697 -21.95889 -21.59446 -21.22029 -19.11642 -18.50225 -17.13567 -16.98262 -16.85023 -16.79342 -16.10430 -15.97066 -15.61192 -15.52354 -14.91603 -14.63556 -14.23099 -14.15018 -13.98758 -13.86657 -13.66172 -13.39967 -13.21474 -12.83349 -12.70374 -12.56234 -12.48304 -12.29267 -12.08606 -12.01317 -11.91317 -11.78887 -11.69016 -11.12185 -10.96304 -10.59679 -10.10828 -9.81161 -9.62845 -9.33704 -8.21514 -6.34923 0.41849 0.51067 1.40887 1.42547 1.52585 2.39591 2.81208 2.98852 3.12626 3.53368 3.65494 3.89402 3.94813 4.05008 4.12907 4.19770 4.26737 4.30097 4.34536 4.38284 4.50498 4.54301 4.63206 4.69607 4.70644 4.77342 4.83492 5.05161 5.08278 5.12017 5.18334 5.19566 5.27730 5.41593 5.57046 5.59530 5.63257 5.67472 5.77026 5.98294 6.11542 6.15506 6.25187 6.69210 6.73421 7.34798 7.45056 8.84773 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002974 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.663398 B = 9412.817129 C = 9659.645554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.225 3.775 10 O -0.603 6.603 11 C -0.112 4.112 12 C 0.044 3.956 13 N -0.517 5.517 14 C 0.052 3.948 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.108 0.892 18 O -0.568 6.568 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.125 4.125 25 C 0.061 3.939 26 H 0.269 0.731 27 H 0.378 0.622 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.384 0.616 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.032 0.968 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -18.569 11.070 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.185 3.815 10 O -0.413 6.413 11 C -0.151 4.151 12 C -0.083 4.083 13 N -0.241 5.241 14 C -0.077 4.077 15 C -0.161 4.161 16 C 0.096 3.904 17 H 0.125 0.875 18 O -0.376 6.376 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.067 4.067 26 H 0.078 0.922 27 H 0.228 0.772 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.050 0.950 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.461 -18.982 10.908 22.342 hybrid contribution -1.013 1.575 -0.297 1.896 sum 3.448 -17.406 10.611 20.675 Atomic orbital electron populations 1.69700 1.06822 1.28135 1.50926 1.25718 0.95888 1.02337 0.93453 0.85507 0.78707 0.78964 0.78131 1.20288 1.20482 1.19574 1.21958 0.93409 0.92128 1.51687 0.92816 1.19632 0.86743 0.92256 0.82822 1.86082 1.50777 1.54996 1.49405 1.22771 0.99170 0.94113 0.99021 1.23204 0.88714 0.95997 1.00412 1.64780 1.23207 1.07694 1.28454 1.22244 1.00991 0.86928 0.97488 1.22083 1.03404 0.94002 0.96632 1.20743 0.90382 0.90042 0.89195 0.87452 1.86593 1.18602 1.82539 1.49837 1.20620 0.94522 0.99992 0.97298 1.21139 0.98501 0.99083 0.95592 1.21432 0.98619 0.98714 0.95702 1.21516 0.92555 0.99988 1.00732 1.21453 0.99857 0.98284 0.94898 1.21252 0.97096 0.99189 0.96765 1.22673 0.99312 0.94316 0.90360 0.92152 0.77192 0.93345 0.93300 0.94560 0.89441 0.94932 0.90931 0.90331 0.91355 0.76642 0.85008 0.84175 0.84056 0.84140 0.84969 0.95014 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.82 10.89 21.45 0.23 -49.58 16 2 C 0.03 1.39 5.27 84.66 0.45 1.84 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.55 -30.62 8.10 25.60 0.21 -30.41 16 8 H 0.05 2.97 7.34 -2.91 -0.02 2.95 16 9 C 0.23 11.56 0.99 -10.66 -0.01 11.55 16 10 O -0.60 -32.74 12.92 -148.98 -1.93 -34.67 16 11 C -0.11 -5.30 5.50 31.80 0.17 -5.13 16 12 C 0.04 1.70 5.91 86.65 0.51 2.21 16 13 N -0.52 -19.69 5.24 -883.02 -4.63 -24.32 16 14 C 0.05 1.57 4.60 86.30 0.40 1.97 16 15 C -0.12 -2.95 4.97 30.60 0.15 -2.80 16 16 C 0.16 3.25 3.21 29.85 0.10 3.35 16 17 H 0.11 2.20 8.05 -2.39 -0.02 2.18 16 18 O -0.57 -12.57 12.67 -148.98 -1.89 -14.46 16 19 C -0.12 -2.42 5.00 -19.86 -0.10 -2.52 16 20 C -0.13 -2.21 9.33 22.27 0.21 -2.00 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.12 -2.27 9.68 22.27 0.22 -2.06 16 25 C 0.06 2.76 6.13 86.44 0.53 3.29 16 26 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.38 20.88 7.07 -74.06 -0.52 20.35 16 28 H 0.05 2.43 7.86 -2.38 -0.02 2.41 16 29 H 0.05 2.41 8.06 -2.38 -0.02 2.39 16 30 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 31 H 0.09 2.92 7.80 -2.39 -0.02 2.90 16 32 H 0.03 1.05 7.51 -2.39 -0.02 1.03 16 33 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.61 7.36 -2.39 -0.02 1.59 16 36 H 0.38 6.19 7.40 -74.05 -0.55 5.64 16 37 H 0.13 1.86 6.62 -2.91 -0.02 1.84 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 41 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.03 1.42 7.59 -2.39 -0.02 1.40 16 43 H 0.07 3.28 7.39 -2.38 -0.02 3.26 16 Total: -1.00 -62.44 346.05 -2.74 -65.19 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.06 Total: 38.81 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 3.50 Total: -25.99 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -4.40 Total: -73.91 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -3.81 Total: -49.13 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -62.44 -2.74 -65.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829997902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.243 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds