Wall clock time and date at job start Tue Mar 31 2020 07:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48493 * 109.47165 * 274.01780 * 3 2 1 5 5 H 1.48502 * 109.47125 * 34.02036 * 3 2 1 6 6 H 1.48498 * 109.47077 * 154.01567 * 3 2 1 7 7 C 1.37883 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99882 * 6.82819 * 7 2 1 9 9 C 1.50700 * 119.99893 * 186.82428 * 7 2 1 10 10 O 1.42904 * 110.28478 * 58.25138 * 9 7 2 11 11 C 1.54262 * 110.32177 * 180.37233 * 9 7 2 12 12 C 1.54376 * 105.14591 * 118.84699 * 11 9 7 13 13 N 1.48719 * 104.52011 * 336.27171 * 12 11 9 14 14 C 1.46897 * 111.01809 * 158.97198 * 13 12 11 15 15 C 1.53000 * 109.47850 * 74.48652 * 14 13 12 16 16 C 1.52996 * 109.47276 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.46591 * 304.99626 * 16 15 14 18 18 O 1.42900 * 109.47420 * 64.99964 * 16 15 14 19 19 C 1.50700 * 109.46980 * 185.00176 * 16 15 14 20 20 C 1.38239 * 119.99837 * 279.72296 * 19 16 15 21 21 C 1.38232 * 119.99954 * 179.78953 * 20 19 16 22 22 C 1.38236 * 120.00172 * 0.45926 * 21 20 19 23 23 C 1.38236 * 119.99695 * 359.77511 * 22 21 20 24 24 C 1.38233 * 120.00136 * 0.02562 * 23 22 21 25 25 C 1.48554 * 104.28802 * 39.35914 * 13 12 11 26 26 H 0.97004 * 119.99578 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00360 * 60.67357 * 10 9 7 28 28 H 1.09004 * 110.32202 * 237.79512 * 11 9 7 29 29 H 1.08995 * 110.32372 * 359.90211 * 11 9 7 30 30 H 1.09003 * 110.41498 * 94.97858 * 12 11 9 31 31 H 1.08998 * 110.41338 * 217.41792 * 12 11 9 32 32 H 1.09001 * 109.47072 * 194.49427 * 14 13 12 33 33 H 1.09006 * 109.46743 * 314.48530 * 14 13 12 34 34 H 1.09001 * 109.46673 * 300.00594 * 15 14 13 35 35 H 1.08997 * 109.46938 * 59.99806 * 15 14 13 36 36 H 0.96698 * 114.00099 * 60.00036 * 18 16 15 37 37 H 1.08005 * 119.99609 * 359.97438 * 20 19 16 38 38 H 1.07999 * 119.99883 * 180.25887 * 21 20 19 39 39 H 1.08002 * 120.00281 * 179.79135 * 22 21 20 40 40 H 1.08002 * 120.00043 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00134 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.41216 * 201.79652 * 25 13 12 43 43 H 1.09008 * 110.40823 * 79.35766 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4118 2.0954 -1.3966 5 1 1.4918 2.6266 0.7833 6 1 3.5866 1.4170 0.6134 7 6 2.0045 -1.1941 0.0005 8 1 1.4701 -2.1262 -0.1103 9 6 3.5035 -1.1988 0.1556 10 8 3.8768 -0.5634 1.3800 11 6 4.0417 -2.6439 0.1161 12 6 4.9864 -2.6892 -1.1040 13 7 4.5126 -1.5876 -1.9836 14 6 5.5658 -1.1698 -2.9185 15 6 5.7182 -2.2220 -4.0187 16 6 6.8156 -1.7870 -4.9920 17 1 6.5902 -0.7905 -5.3718 18 8 8.0730 -1.7650 -4.3133 19 6 6.8821 -2.7595 -6.1413 20 6 7.5470 -3.9621 -5.9915 21 6 7.6043 -4.8560 -7.0443 22 6 7.0048 -4.5433 -8.2500 23 6 6.3440 -3.3386 -8.4013 24 6 6.2832 -2.4464 -7.3472 25 6 4.1688 -0.4899 -1.0435 26 1 -0.4850 0.8401 -0.0004 27 1 3.5228 -0.9937 2.1703 28 1 4.5923 -2.8679 1.0298 29 1 3.2215 -3.3499 -0.0137 30 1 6.0163 -2.5115 -0.7942 31 1 4.9023 -3.6486 -1.6145 32 1 5.2962 -0.2130 -3.3655 33 1 6.5086 -1.0669 -2.3811 34 1 5.9878 -3.1788 -3.5716 35 1 4.7754 -2.3250 -4.5560 36 1 8.3379 -2.6203 -3.9483 37 1 8.0192 -4.2045 -5.0509 38 1 8.1202 -5.7974 -6.9260 39 1 7.0524 -5.2403 -9.0737 40 1 5.8759 -3.0940 -9.3434 41 1 5.7672 -1.5050 -7.4655 42 1 3.4703 0.2050 -1.5097 43 1 5.0702 0.0330 -0.7238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829997903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:45 Heat of formation + Delta-G solvation = -62.947030 kcal Electronic energy + Delta-G solvation = -23315.015399 eV Core-core repulsion = 19939.129850 eV Total energy + Delta-G solvation = -3375.885549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90680 -38.67844 -37.21923 -35.18512 -32.57831 -32.23462 -31.22676 -31.07304 -28.90351 -28.12601 -25.38357 -23.88302 -22.88108 -22.30605 -21.12226 -20.49312 -19.45026 -17.75092 -17.05238 -16.19963 -16.04782 -15.84957 -15.14934 -15.04190 -14.71207 -14.38074 -14.07562 -13.74247 -13.55001 -13.44146 -13.14737 -12.82419 -12.66142 -12.36609 -12.07089 -11.92044 -11.64130 -11.61859 -11.29113 -11.23935 -10.96177 -10.82342 -10.58898 -10.27196 -10.13579 -9.97756 -9.80240 -9.15171 -8.98827 -8.92649 -8.62165 -8.31219 -7.89226 -6.09912 -4.16836 1.09870 1.17009 3.36101 3.46660 3.52171 3.68390 4.22453 4.32457 4.52050 4.58243 4.60633 4.76084 4.86922 4.99650 5.13697 5.22579 5.23419 5.29089 5.40306 5.43316 5.53751 5.66643 5.73312 5.75110 5.80122 5.87097 5.94120 6.12637 6.13760 6.21770 6.24121 6.27686 6.33350 6.39134 6.47347 6.67995 6.75349 6.88539 7.09742 7.42228 7.43525 7.61136 7.69805 8.32474 8.87831 9.03040 9.55413 11.01105 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.003469 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.751476 B = 8069.868476 C = 8313.937724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.226 1.226 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.217 3.783 10 O -0.581 6.581 11 C -0.139 4.139 12 C 0.038 3.962 13 N -0.498 5.498 14 C 0.047 3.953 15 C -0.136 4.136 16 C 0.146 3.854 17 H 0.108 0.892 18 O -0.554 6.554 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.110 4.110 25 C 0.051 3.949 26 H 0.264 0.736 27 H 0.363 0.637 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.371 0.629 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.697 -7.828 -12.716 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.148 1.148 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.177 3.823 10 O -0.387 6.387 11 C -0.178 4.178 12 C -0.090 4.090 13 N -0.222 5.222 14 C -0.082 4.082 15 C -0.174 4.174 16 C 0.086 3.914 17 H 0.126 0.874 18 O -0.360 6.360 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.077 4.077 26 H 0.073 0.927 27 H 0.210 0.790 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.219 0.781 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.380 -6.855 -13.617 21.655 hybrid contribution 0.564 0.105 0.732 0.930 sum 15.944 -6.750 -12.885 21.582 Atomic orbital electron populations 1.69954 1.06619 1.27250 1.49055 1.24988 0.94580 0.99613 0.92867 0.87089 0.83054 0.82635 0.77462 1.21597 1.22526 1.14850 1.21335 0.89053 0.94900 1.51931 0.90605 1.19707 0.94194 0.86731 0.81632 1.86514 1.77502 1.58312 1.16346 1.22966 0.98378 1.00475 0.95939 1.23058 0.96357 0.95518 0.94086 1.65309 1.34836 1.07012 1.15077 1.22193 0.93606 0.97914 0.94489 1.22194 0.99272 0.99283 0.96663 1.20908 0.83744 0.98027 0.88695 0.87444 1.86624 1.37518 1.36930 1.74916 1.20609 0.98219 0.96055 0.96012 1.20874 0.99517 0.93680 0.99017 1.21112 0.99783 0.99350 0.93363 1.21167 0.98350 0.97074 0.97621 1.21163 0.99275 0.94287 0.98884 1.21047 0.99300 0.99894 0.92539 1.23239 0.97976 0.93317 0.93148 0.92656 0.79030 0.92481 0.90836 0.94888 0.91243 0.91208 0.94300 0.91551 0.89829 0.78092 0.86294 0.86049 0.86152 0.85963 0.85763 0.90230 0.95227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.08 2.41 5.43 -17.82 -0.10 2.31 16 3 Si 0.87 22.18 24.05 -169.99 -4.09 18.09 16 4 H -0.29 -7.28 7.09 56.52 0.40 -6.88 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 6 H -0.23 -5.62 5.22 56.52 0.29 -5.33 16 7 C -0.53 -14.90 8.82 -34.44 -0.30 -15.20 16 8 H 0.08 2.30 7.60 -52.48 -0.40 1.90 16 9 C 0.22 5.09 0.90 -90.39 -0.08 5.01 16 10 O -0.58 -13.26 10.16 -35.23 -0.36 -13.62 16 11 C -0.14 -2.76 6.43 -25.35 -0.16 -2.92 16 12 C 0.04 0.66 5.93 -2.09 -0.01 0.65 16 13 N -0.50 -9.65 5.34 -229.84 -1.23 -10.88 16 14 C 0.05 0.73 4.73 -3.83 -0.02 0.72 16 15 C -0.14 -1.73 4.99 -26.73 -0.13 -1.86 16 16 C 0.15 1.62 3.21 -27.88 -0.09 1.53 16 17 H 0.11 1.19 8.00 -51.93 -0.42 0.77 16 18 O -0.55 -6.29 12.72 -35.23 -0.45 -6.74 16 19 C -0.11 -1.14 4.97 -104.62 -0.52 -1.66 16 20 C -0.11 -1.07 9.32 -39.58 -0.37 -1.44 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 24 C -0.11 -1.11 9.67 -39.58 -0.38 -1.49 16 25 C 0.05 1.14 4.12 -2.19 -0.01 1.13 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.36 7.18 9.08 45.56 0.41 7.59 16 28 H 0.06 1.01 7.98 -51.93 -0.41 0.60 16 29 H 0.07 1.51 7.42 -51.93 -0.39 1.13 16 30 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 31 H 0.07 1.09 7.86 -51.93 -0.41 0.69 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 34 H 0.07 0.80 7.47 -51.93 -0.39 0.41 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.37 3.05 7.50 45.56 0.34 3.39 16 37 H 0.12 0.90 6.78 -52.48 -0.36 0.55 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.09 8.04 -52.48 -0.42 0.67 16 42 H 0.08 1.96 4.85 -51.93 -0.25 1.70 16 43 H 0.03 0.65 7.94 -51.92 -0.41 0.24 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -32.96 338.73 -8.85 -41.82 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.24 Total: 10.40 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.37 Total: -17.62 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.45 Total: -37.43 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.81 Total: -20.36 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.09 Total: 18.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.96 -8.85 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829997903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.131 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds