Wall clock time and date at job start Tue Mar 31 2020 07:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48493 * 109.47165 * 274.01780 * 3 2 1 5 5 H 1.48502 * 109.47125 * 34.02036 * 3 2 1 6 6 H 1.48498 * 109.47077 * 154.01567 * 3 2 1 7 7 C 1.37883 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99882 * 6.82819 * 7 2 1 9 9 C 1.50700 * 119.99893 * 186.82428 * 7 2 1 10 10 O 1.42904 * 110.28478 * 58.25138 * 9 7 2 11 11 C 1.54262 * 110.32177 * 180.37233 * 9 7 2 12 12 C 1.54376 * 105.14591 * 118.84699 * 11 9 7 13 13 N 1.48719 * 104.52011 * 336.27171 * 12 11 9 14 14 C 1.46897 * 111.01809 * 158.97198 * 13 12 11 15 15 C 1.53000 * 109.47850 * 74.48652 * 14 13 12 16 16 C 1.52996 * 109.47276 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.46591 * 304.99626 * 16 15 14 18 18 O 1.42900 * 109.47420 * 64.99964 * 16 15 14 19 19 C 1.50700 * 109.46980 * 185.00176 * 16 15 14 20 20 C 1.38239 * 119.99837 * 279.72296 * 19 16 15 21 21 C 1.38232 * 119.99954 * 179.78953 * 20 19 16 22 22 C 1.38236 * 120.00172 * 0.45926 * 21 20 19 23 23 C 1.38236 * 119.99695 * 359.77511 * 22 21 20 24 24 C 1.38233 * 120.00136 * 0.02562 * 23 22 21 25 25 C 1.48554 * 104.28802 * 39.35914 * 13 12 11 26 26 H 0.97004 * 119.99578 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00360 * 60.67357 * 10 9 7 28 28 H 1.09004 * 110.32202 * 237.79512 * 11 9 7 29 29 H 1.08995 * 110.32372 * 359.90211 * 11 9 7 30 30 H 1.09003 * 110.41498 * 94.97858 * 12 11 9 31 31 H 1.08998 * 110.41338 * 217.41792 * 12 11 9 32 32 H 1.09001 * 109.47072 * 194.49427 * 14 13 12 33 33 H 1.09006 * 109.46743 * 314.48530 * 14 13 12 34 34 H 1.09001 * 109.46673 * 300.00594 * 15 14 13 35 35 H 1.08997 * 109.46938 * 59.99806 * 15 14 13 36 36 H 0.96698 * 114.00099 * 60.00036 * 18 16 15 37 37 H 1.08005 * 119.99609 * 359.97438 * 20 19 16 38 38 H 1.07999 * 119.99883 * 180.25887 * 21 20 19 39 39 H 1.08002 * 120.00281 * 179.79135 * 22 21 20 40 40 H 1.08002 * 120.00043 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00134 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.41216 * 201.79652 * 25 13 12 43 43 H 1.09008 * 110.40823 * 79.35766 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4118 2.0954 -1.3966 5 1 1.4918 2.6266 0.7833 6 1 3.5866 1.4170 0.6134 7 6 2.0045 -1.1941 0.0005 8 1 1.4701 -2.1262 -0.1103 9 6 3.5035 -1.1988 0.1556 10 8 3.8768 -0.5634 1.3800 11 6 4.0417 -2.6439 0.1161 12 6 4.9864 -2.6892 -1.1040 13 7 4.5126 -1.5876 -1.9836 14 6 5.5658 -1.1698 -2.9185 15 6 5.7182 -2.2220 -4.0187 16 6 6.8156 -1.7870 -4.9920 17 1 6.5902 -0.7905 -5.3718 18 8 8.0730 -1.7650 -4.3133 19 6 6.8821 -2.7595 -6.1413 20 6 7.5470 -3.9621 -5.9915 21 6 7.6043 -4.8560 -7.0443 22 6 7.0048 -4.5433 -8.2500 23 6 6.3440 -3.3386 -8.4013 24 6 6.2832 -2.4464 -7.3472 25 6 4.1688 -0.4899 -1.0435 26 1 -0.4850 0.8401 -0.0004 27 1 3.5228 -0.9937 2.1703 28 1 4.5923 -2.8679 1.0298 29 1 3.2215 -3.3499 -0.0137 30 1 6.0163 -2.5115 -0.7942 31 1 4.9023 -3.6486 -1.6145 32 1 5.2962 -0.2130 -3.3655 33 1 6.5086 -1.0669 -2.3811 34 1 5.9878 -3.1788 -3.5716 35 1 4.7754 -2.3250 -4.5560 36 1 8.3379 -2.6203 -3.9483 37 1 8.0192 -4.2045 -5.0509 38 1 8.1202 -5.7974 -6.9260 39 1 7.0524 -5.2403 -9.0737 40 1 5.8759 -3.0940 -9.3434 41 1 5.7672 -1.5050 -7.4655 42 1 3.4703 0.2050 -1.5097 43 1 5.0702 0.0330 -0.7238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829997903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:44 Heat of formation + Delta-G solvation = -89.268153 kcal Electronic energy + Delta-G solvation = -23316.156768 eV Core-core repulsion = 19939.129850 eV Total energy + Delta-G solvation = -3377.026918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73324 -40.16461 -38.13347 -36.76570 -34.45558 -33.63191 -32.26678 -31.74136 -30.24200 -29.84196 -26.79525 -25.47809 -23.69738 -23.34850 -21.99733 -21.88433 -21.18713 -19.09930 -18.48860 -17.43243 -17.09166 -16.95244 -16.76913 -16.16132 -15.95899 -15.62824 -15.34523 -15.04165 -14.76018 -14.64826 -14.25406 -14.19351 -13.92136 -13.79827 -13.64061 -13.44671 -12.99341 -12.79225 -12.64296 -12.40810 -12.12568 -12.04620 -11.92593 -11.89210 -11.76278 -11.51891 -11.04431 -10.95026 -10.76621 -10.22961 -9.82305 -9.64964 -9.35530 -8.34462 -6.43705 0.40534 0.49855 1.32557 1.38798 1.63623 2.38571 2.78750 2.95252 3.06510 3.53610 3.63275 3.71965 3.89409 3.93356 4.09854 4.12958 4.20475 4.25612 4.27825 4.31511 4.42543 4.45531 4.54130 4.64851 4.66876 4.72770 4.75967 4.87317 5.04259 5.06347 5.08321 5.17112 5.19952 5.27701 5.38378 5.55666 5.60521 5.62106 5.66305 5.91901 6.10397 6.13171 6.19843 6.65887 6.75005 7.18742 7.36714 8.80421 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.003469 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.751476 B = 8069.868476 C = 8313.937724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.213 1.213 7 C -0.532 4.532 8 H 0.037 0.963 9 C 0.211 3.789 10 O -0.584 6.584 11 C -0.137 4.137 12 C 0.044 3.956 13 N -0.516 5.516 14 C 0.048 3.952 15 C -0.123 4.123 16 C 0.157 3.843 17 H 0.102 0.898 18 O -0.565 6.565 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.128 4.128 25 C 0.053 3.947 26 H 0.265 0.735 27 H 0.376 0.624 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.385 0.615 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.053 0.947 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.413 -8.671 -13.324 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.168 4.168 3 Si 0.758 3.242 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.135 1.135 7 C -0.570 4.570 8 H 0.055 0.945 9 C 0.171 3.829 10 O -0.392 6.392 11 C -0.175 4.175 12 C -0.083 4.083 13 N -0.241 5.241 14 C -0.080 4.080 15 C -0.161 4.161 16 C 0.097 3.903 17 H 0.120 0.880 18 O -0.373 6.373 19 C -0.124 4.124 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.075 4.075 26 H 0.074 0.926 27 H 0.224 0.776 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.120 -7.724 -14.218 24.293 hybrid contribution -0.295 0.249 0.907 0.986 sum 17.824 -7.475 -13.311 23.469 Atomic orbital electron populations 1.70078 1.08285 1.28063 1.51461 1.25750 0.95135 1.03000 0.92903 0.86130 0.82140 0.78571 0.77396 1.21408 1.22938 1.13512 1.21622 0.91773 0.93138 1.50468 0.94476 1.19674 0.91488 0.89497 0.82219 1.86453 1.77219 1.58820 1.16665 1.22884 0.98679 0.97434 0.98475 1.23087 0.96603 0.95786 0.92829 1.65278 1.37166 1.06499 1.15165 1.22255 0.92676 0.98625 0.94462 1.22073 0.99381 0.98783 0.95907 1.20700 0.83109 0.98008 0.88475 0.87978 1.86597 1.37363 1.38277 1.75062 1.20607 0.99355 0.96557 0.95907 1.21157 0.99341 0.93378 1.00131 1.21452 0.99647 1.00091 0.93178 1.21520 0.97651 0.97214 0.98386 1.21442 0.99429 0.94429 0.99354 1.21262 0.99766 1.00556 0.93020 1.23030 0.97503 0.93918 0.93031 0.92620 0.77597 0.90039 0.92410 0.92745 0.89150 0.91932 0.93531 0.90483 0.91115 0.76507 0.84539 0.83933 0.84049 0.84371 0.85413 0.92858 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.27 13.96 21.45 0.30 -58.97 16 2 C 0.03 1.84 5.43 84.66 0.46 2.30 16 3 Si 0.93 46.49 24.05 68.60 1.65 48.14 16 4 H -0.29 -14.10 7.09 99.48 0.71 -13.39 16 5 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 6 H -0.21 -10.09 5.22 99.48 0.52 -9.57 16 7 C -0.53 -30.19 8.82 25.60 0.23 -29.96 16 8 H 0.04 2.34 7.60 -2.91 -0.02 2.31 16 9 C 0.21 9.69 0.90 -10.65 -0.01 9.68 16 10 O -0.58 -25.55 10.16 -148.98 -1.51 -27.06 16 11 C -0.14 -5.15 6.43 31.49 0.20 -4.95 16 12 C 0.04 1.42 5.93 86.42 0.51 1.93 16 13 N -0.52 -19.14 5.34 -881.08 -4.70 -23.84 16 14 C 0.05 1.41 4.73 86.30 0.41 1.82 16 15 C -0.12 -2.90 4.99 30.59 0.15 -2.75 16 16 C 0.16 3.22 3.21 29.85 0.10 3.32 16 17 H 0.10 2.18 8.00 -2.39 -0.02 2.16 16 18 O -0.57 -11.50 12.72 -148.98 -1.90 -13.40 16 19 C -0.12 -2.42 4.97 -19.87 -0.10 -2.52 16 20 C -0.12 -2.05 9.32 22.27 0.21 -1.84 16 21 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.46 9.67 22.27 0.22 -2.24 16 25 C 0.05 2.32 4.12 86.45 0.36 2.68 16 26 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 27 H 0.38 14.21 9.08 -74.06 -0.67 13.53 16 28 H 0.08 2.65 7.98 -2.38 -0.02 2.64 16 29 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 30 H 0.05 1.54 7.75 -2.39 -0.02 1.52 16 31 H 0.09 2.54 7.86 -2.39 -0.02 2.52 16 32 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 33 H 0.05 1.32 7.45 -2.38 -0.02 1.30 16 34 H 0.08 1.64 7.47 -2.39 -0.02 1.62 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.39 5.20 7.50 -74.06 -0.56 4.64 16 37 H 0.14 1.67 6.78 -2.91 -0.02 1.65 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.13 2.21 8.04 -2.91 -0.02 2.18 16 42 H 0.05 2.59 4.85 -2.39 -0.01 2.58 16 43 H 0.04 1.54 7.94 -2.38 -0.02 1.52 16 Total: -1.00 -71.39 338.73 -3.16 -74.55 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.40 Total: 28.46 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.40 Total: -27.87 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -4.40 Total: -82.81 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -3.41 Total: -40.46 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.65 Total: 48.14 kcal Total: -71.39 -3.16 -74.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829997903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.717 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds