Wall clock time and date at job start Tue Mar 31 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47071 * 300.00380 * 3 2 1 6 6 H 1.48498 * 109.46651 * 59.99872 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.46912 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47060 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.46906 * 55.00224 * 17 16 15 19 19 O 1.42899 * 109.47478 * 295.00066 * 17 16 15 20 20 C 1.50699 * 109.47482 * 174.99860 * 17 16 15 21 21 C 1.38236 * 119.99844 * 84.72726 * 20 17 16 22 22 C 1.38240 * 119.99808 * 179.78702 * 21 20 17 23 23 C 1.38231 * 119.99865 * 0.44515 * 22 21 20 24 24 C 1.38233 * 120.00154 * 359.80650 * 23 22 21 25 25 C 1.38228 * 119.99936 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 28 28 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 29 29 H 1.08998 * 109.47624 * 59.99590 * 10 9 7 30 30 H 1.09002 * 109.47045 * 299.99967 * 10 9 7 31 31 H 0.97005 * 120.00266 * 359.97438 * 11 10 9 32 32 H 1.09001 * 109.46980 * 59.99654 * 14 12 11 33 33 H 1.08992 * 109.47158 * 299.99760 * 14 12 11 34 34 H 1.09002 * 109.47398 * 300.00078 * 15 14 12 35 35 H 1.09001 * 109.47194 * 60.00258 * 15 14 12 36 36 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 37 37 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 38 38 H 0.96705 * 114.00115 * 300.00173 * 19 17 16 39 39 H 1.07998 * 120.00140 * 0.02562 * 21 20 17 40 40 H 1.08004 * 119.99537 * 180.27497 * 22 21 20 41 41 H 1.08007 * 119.99307 * 179.83263 * 23 22 21 42 42 H 1.07999 * 119.99764 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.99910 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1868 -6.0980 -0.0028 13 8 3.3996 -6.0979 -0.0014 14 6 1.4333 -7.4031 -0.0040 15 6 2.4276 -8.5660 -0.0039 16 6 1.6627 -9.8910 -0.0045 17 6 2.6568 -11.0539 -0.0037 18 1 3.3403 -10.9470 0.8387 19 8 3.4002 -11.0460 -1.2241 20 6 1.9074 -12.3555 0.1196 21 6 1.3905 -12.9649 -1.0084 22 6 0.7068 -14.1611 -0.8958 23 6 0.5322 -14.7432 0.3457 24 6 1.0447 -14.1312 1.4743 25 6 1.7322 -12.9373 1.3612 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6241 -2.5575 0.8880 29 1 2.8714 -3.6047 0.8890 30 1 2.8727 -3.6039 -0.8909 31 1 0.5429 -4.9308 -0.0039 32 1 0.8076 -7.4606 -0.8947 33 1 0.8057 -7.4611 0.8852 34 1 3.0549 -8.5078 -0.8934 35 1 3.0536 -8.5087 0.8866 36 1 1.0356 -9.9490 0.8852 37 1 1.0363 -9.9486 -0.8947 38 1 2.8548 -11.1374 -2.0175 39 1 1.5240 -12.5084 -1.9780 40 1 0.3068 -14.6395 -1.7777 41 1 -0.0043 -15.6764 0.4339 42 1 0.9078 -14.5858 2.4443 43 1 2.1322 -12.4589 2.2430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832023220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:58 Heat of formation + Delta-G solvation = -95.399216 kcal Electronic energy + Delta-G solvation = -21538.199606 eV Core-core repulsion = 18160.906825 eV Total energy + Delta-G solvation = -3377.292781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07283 -39.23014 -37.48072 -34.95121 -34.07867 -32.83028 -31.96426 -31.22883 -29.95947 -28.50447 -25.36653 -24.17950 -22.98079 -21.91286 -21.24411 -20.87707 -19.85777 -17.92787 -16.83548 -16.43010 -16.32869 -16.02559 -15.61473 -15.45274 -14.96891 -14.62537 -14.46850 -14.21864 -13.88446 -13.71502 -13.43715 -13.09103 -12.90736 -12.36786 -12.20052 -12.02714 -11.87725 -11.76533 -11.44277 -11.19368 -11.08690 -11.04628 -10.75723 -10.62577 -10.34432 -10.32794 -9.77912 -9.43941 -9.31057 -9.17648 -9.05560 -8.53198 -8.33868 -6.09900 -4.12569 0.93996 1.01118 3.06356 3.28106 3.35463 3.36144 3.40847 3.71743 4.14526 4.23532 4.42177 4.45841 4.58202 4.69815 4.72817 4.79469 4.99550 5.07537 5.14814 5.18770 5.25377 5.27212 5.49755 5.54233 5.58838 5.63809 5.68355 5.69468 6.06561 6.08822 6.12948 6.22705 6.32211 6.36322 6.37226 6.59708 6.75204 6.95920 7.31255 7.52028 7.61685 7.88709 8.05565 8.28151 8.70695 8.93888 9.52358 11.01742 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046112 B = 0.001918 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.073546 B =14591.531851 C =14800.398783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.725 5.725 12 C 0.502 3.498 13 O -0.552 6.552 14 C -0.142 4.142 15 C -0.099 4.099 16 C -0.145 4.145 17 C 0.146 3.854 18 H 0.109 0.891 19 O -0.551 6.551 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.112 4.112 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.372 0.628 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 -29.380 0.071 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.375 5.375 12 C 0.288 3.712 13 O -0.430 6.430 14 C -0.182 4.182 15 C -0.137 4.137 16 C -0.183 4.183 17 C 0.087 3.913 18 H 0.126 0.874 19 O -0.357 6.357 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.130 4.130 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.220 0.780 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.902 -29.161 0.483 29.179 hybrid contribution -0.776 0.879 -0.307 1.212 sum -1.678 -28.282 0.177 28.332 Atomic orbital electron populations 1.69963 1.06091 1.26757 1.50535 1.25006 0.94903 0.99443 0.95007 0.86454 0.80182 0.83312 0.77610 1.19573 1.20926 1.20936 1.21106 0.93304 0.90410 1.51136 0.92192 1.19330 0.94219 0.91204 0.97801 1.21700 0.96038 0.81718 1.00701 1.46374 1.10482 1.06699 1.73956 1.20643 0.88331 0.85698 0.76541 1.90674 1.14153 1.87908 1.50289 1.21690 0.99463 0.93023 1.04005 1.21263 0.97231 0.90950 1.04286 1.22313 0.98208 0.94656 1.03135 1.20884 0.92510 0.89474 0.88417 0.87352 1.86667 1.37490 1.96118 1.15390 1.20663 0.99012 0.97657 0.93943 1.20889 0.98160 0.95998 0.98091 1.21137 0.98981 0.95717 0.97692 1.21186 1.00100 1.00090 0.92805 1.21168 0.98034 0.95654 0.98731 1.21026 0.99200 0.95780 0.96974 0.92909 0.95960 0.95971 0.92668 0.92666 0.76961 0.89292 0.89292 0.90432 0.91160 0.90762 0.91380 0.78014 0.86176 0.85986 0.86104 0.85948 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.61 5.61 -4.05 -0.02 2.59 16 11 N -0.73 -12.66 5.56 -60.30 -0.33 -13.00 16 12 C 0.50 8.40 7.83 -10.98 -0.09 8.32 16 13 O -0.55 -11.49 15.98 5.56 0.09 -11.40 16 14 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 15 C -0.10 -1.09 4.40 -26.73 -0.12 -1.21 16 16 C -0.15 -1.17 4.87 -26.74 -0.13 -1.30 16 17 C 0.15 1.23 3.21 -27.89 -0.09 1.14 16 18 H 0.11 0.95 8.05 -51.93 -0.42 0.53 16 19 O -0.55 -5.23 12.67 -35.23 -0.45 -5.67 16 20 C -0.11 -0.91 5.00 -104.62 -0.52 -1.43 16 21 C -0.11 -0.83 9.33 -39.58 -0.37 -1.20 16 22 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 23 C -0.12 -0.84 10.05 -39.59 -0.40 -1.23 16 24 C -0.12 -0.83 10.05 -39.59 -0.40 -1.22 16 25 C -0.11 -0.86 9.68 -39.59 -0.38 -1.24 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.40 5.91 8.47 -40.82 -0.35 5.57 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.99 7.78 -51.93 -0.40 0.58 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.37 2.28 7.40 45.56 0.34 2.61 16 39 H 0.12 0.65 6.62 -52.49 -0.35 0.30 16 40 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -33.80 363.63 -9.34 -43.14 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.21 Total: 3.39 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.63 Total: -12.93 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.40 Total: -38.46 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.36 Total: -17.07 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.80 -9.34 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.262 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds