Wall clock time and date at job start Tue Mar 31 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47071 * 300.00380 * 3 2 1 6 6 H 1.48498 * 109.46651 * 59.99872 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.46912 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47060 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.46906 * 55.00224 * 17 16 15 19 19 O 1.42899 * 109.47478 * 295.00066 * 17 16 15 20 20 C 1.50699 * 109.47482 * 174.99860 * 17 16 15 21 21 C 1.38236 * 119.99844 * 84.72726 * 20 17 16 22 22 C 1.38240 * 119.99808 * 179.78702 * 21 20 17 23 23 C 1.38231 * 119.99865 * 0.44515 * 22 21 20 24 24 C 1.38233 * 120.00154 * 359.80650 * 23 22 21 25 25 C 1.38228 * 119.99936 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 28 28 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 29 29 H 1.08998 * 109.47624 * 59.99590 * 10 9 7 30 30 H 1.09002 * 109.47045 * 299.99967 * 10 9 7 31 31 H 0.97005 * 120.00266 * 359.97438 * 11 10 9 32 32 H 1.09001 * 109.46980 * 59.99654 * 14 12 11 33 33 H 1.08992 * 109.47158 * 299.99760 * 14 12 11 34 34 H 1.09002 * 109.47398 * 300.00078 * 15 14 12 35 35 H 1.09001 * 109.47194 * 60.00258 * 15 14 12 36 36 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 37 37 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 38 38 H 0.96705 * 114.00115 * 300.00173 * 19 17 16 39 39 H 1.07998 * 120.00140 * 0.02562 * 21 20 17 40 40 H 1.08004 * 119.99537 * 180.27497 * 22 21 20 41 41 H 1.08007 * 119.99307 * 179.83263 * 23 22 21 42 42 H 1.07999 * 119.99764 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.99910 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1868 -6.0980 -0.0028 13 8 3.3996 -6.0979 -0.0014 14 6 1.4333 -7.4031 -0.0040 15 6 2.4276 -8.5660 -0.0039 16 6 1.6627 -9.8910 -0.0045 17 6 2.6568 -11.0539 -0.0037 18 1 3.3403 -10.9470 0.8387 19 8 3.4002 -11.0460 -1.2241 20 6 1.9074 -12.3555 0.1196 21 6 1.3905 -12.9649 -1.0084 22 6 0.7068 -14.1611 -0.8958 23 6 0.5322 -14.7432 0.3457 24 6 1.0447 -14.1312 1.4743 25 6 1.7322 -12.9373 1.3612 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6241 -2.5575 0.8880 29 1 2.8714 -3.6047 0.8890 30 1 2.8727 -3.6039 -0.8909 31 1 0.5429 -4.9308 -0.0039 32 1 0.8076 -7.4606 -0.8947 33 1 0.8057 -7.4611 0.8852 34 1 3.0549 -8.5078 -0.8934 35 1 3.0536 -8.5087 0.8866 36 1 1.0356 -9.9490 0.8852 37 1 1.0363 -9.9486 -0.8947 38 1 2.8548 -11.1374 -2.0175 39 1 1.5240 -12.5084 -1.9780 40 1 0.3068 -14.6395 -1.7777 41 1 -0.0043 -15.6764 0.4339 42 1 0.9078 -14.5858 2.4443 43 1 2.1322 -12.4589 2.2430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832023220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:58 Heat of formation + Delta-G solvation = -117.877359 kcal Electronic energy + Delta-G solvation = -21539.174332 eV Core-core repulsion = 18160.906825 eV Total energy + Delta-G solvation = -3378.267506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79523 -40.45540 -38.12773 -36.63577 -35.01703 -34.80893 -32.61888 -31.72265 -31.64346 -29.50334 -26.90056 -25.36648 -23.49240 -23.09513 -22.42160 -21.85064 -21.17760 -18.63841 -18.46706 -17.88304 -17.17623 -16.80273 -16.66401 -16.53993 -16.42489 -15.93642 -15.65498 -14.98247 -14.90938 -14.58260 -14.34188 -14.27495 -14.12649 -13.85736 -13.22900 -12.99175 -12.90486 -12.82711 -12.68969 -12.52150 -12.45182 -12.23650 -11.96270 -11.73804 -11.67318 -11.59233 -11.45571 -11.04835 -10.71544 -10.62060 -9.99132 -9.81352 -9.62120 -8.25573 -6.36007 0.42022 0.50802 1.40005 1.41013 1.54238 1.72087 2.29932 2.47531 2.85732 3.09001 3.54198 3.60756 3.83090 3.94828 4.03169 4.10722 4.17942 4.29534 4.37212 4.41454 4.47829 4.49308 4.62802 4.65805 4.76838 4.81924 4.85395 4.89719 4.97096 5.09109 5.16161 5.29751 5.30845 5.45082 5.52339 5.57200 5.57392 5.63801 5.68034 5.78182 6.11558 6.15568 6.68242 6.77410 6.80120 7.33414 7.34918 8.86373 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046112 B = 0.001918 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.073546 B =14591.531851 C =14800.398783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.721 5.721 12 C 0.498 3.502 13 O -0.597 6.597 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.133 4.133 17 C 0.149 3.851 18 H 0.098 0.902 19 O -0.571 6.571 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.127 4.127 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.412 0.588 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.385 0.615 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -30.364 -0.086 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.372 5.372 12 C 0.287 3.713 13 O -0.478 6.478 14 C -0.169 4.169 15 C -0.133 4.133 16 C -0.170 4.170 17 C 0.090 3.910 18 H 0.116 0.884 19 O -0.379 6.379 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.248 0.752 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.235 0.765 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.879 -30.169 0.320 30.229 hybrid contribution -0.486 1.123 -0.265 1.252 sum -2.365 -29.046 0.056 29.142 Atomic orbital electron populations 1.70056 1.07483 1.27966 1.51011 1.25874 0.95831 1.03093 0.94394 0.85390 0.78895 0.78750 0.77968 1.19115 1.20115 1.20134 1.21509 0.93542 0.92065 1.51528 0.92499 1.19137 0.94208 0.91738 0.96401 1.21182 0.95080 0.82781 0.99470 1.46222 1.11146 1.05666 1.74162 1.21644 0.88057 0.86880 0.74710 1.90658 1.16458 1.88570 1.52111 1.21731 0.99248 0.89211 1.06667 1.21189 0.97113 0.92580 1.02411 1.22199 0.97857 0.92509 1.04446 1.20814 0.92340 0.90090 0.87799 0.88413 1.86631 1.38703 1.96213 1.16358 1.20659 0.99595 0.97653 0.94492 1.21149 0.98056 0.96329 0.98593 1.21440 0.98798 0.95668 0.98524 1.21508 0.99918 1.00767 0.92748 1.21437 0.97838 0.95536 0.99744 1.21242 0.99612 0.96326 0.97276 0.92498 0.97210 0.97226 0.93928 0.93939 0.75237 0.86429 0.86460 0.92570 0.92971 0.89581 0.89796 0.76507 0.84664 0.84227 0.84298 0.84401 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -30.99 9.11 25.60 0.23 -30.75 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.14 6.10 5.61 86.38 0.48 6.58 16 11 N -0.72 -24.78 5.56 -463.07 -2.57 -27.35 16 12 C 0.50 16.33 7.83 87.66 0.69 17.02 16 13 O -0.60 -25.17 15.98 -3.02 -0.05 -25.22 16 14 C -0.13 -2.61 5.70 29.85 0.17 -2.44 16 15 C -0.09 -1.98 4.40 30.59 0.13 -1.85 16 16 C -0.13 -1.87 4.87 30.59 0.15 -1.72 16 17 C 0.15 2.38 3.21 29.85 0.10 2.48 16 18 H 0.10 1.72 8.05 -2.39 -0.02 1.70 16 19 O -0.57 -10.51 12.67 -148.98 -1.89 -12.40 16 20 C -0.12 -1.85 5.00 -19.87 -0.10 -1.95 16 21 C -0.12 -1.60 9.33 22.27 0.21 -1.40 16 22 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 23 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 24 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 25 C -0.13 -1.81 9.68 22.27 0.22 -1.60 16 26 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 11.74 8.47 -92.70 -0.79 10.96 16 32 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.42 7.78 -2.39 -0.02 1.40 16 35 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.38 4.30 7.40 -74.05 -0.55 3.75 16 39 H 0.14 1.20 6.62 -2.91 -0.02 1.19 16 40 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -73.24 363.63 1.03 -72.21 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.33 Total: 18.30 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.56 Total: -17.45 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.29 Total: -81.36 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.94 Total: -37.62 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.24 1.03 -72.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.671 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds