Wall clock time and date at job start Tue Mar 31 2020 07:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99744 * 2 1 4 4 H 1.48501 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47162 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.46915 * 60.00398 * 3 2 1 7 7 C 1.37872 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00673 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99921 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00109 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99840 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46740 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46876 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47338 * 179.97438 * 16 15 14 18 18 H 1.08999 * 109.47269 * 305.00414 * 17 16 15 19 19 O 1.42903 * 109.46459 * 65.00307 * 17 16 15 20 20 C 1.50696 * 109.47222 * 184.99973 * 17 16 15 21 21 C 1.38234 * 120.00111 * 279.72695 * 20 17 16 22 22 C 1.38238 * 119.99829 * 179.78647 * 21 20 17 23 23 C 1.38239 * 119.99904 * 0.44948 * 22 21 20 24 24 C 1.38233 * 119.99728 * 359.80521 * 23 22 21 25 25 C 1.38229 * 120.00465 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00417 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46818 * 60.00782 * 9 7 2 28 28 H 1.08999 * 109.47284 * 300.00495 * 9 7 2 29 29 H 1.09005 * 109.46682 * 60.00533 * 10 9 7 30 30 H 1.09000 * 109.47491 * 300.00845 * 10 9 7 31 31 H 0.96999 * 120.00388 * 0.02562 * 11 10 9 32 32 H 1.08992 * 109.47506 * 59.99717 * 14 12 11 33 33 H 1.08999 * 109.46876 * 299.99632 * 14 12 11 34 34 H 1.09005 * 109.47575 * 60.00253 * 15 14 12 35 35 H 1.08999 * 109.47254 * 299.99546 * 15 14 12 36 36 H 1.09005 * 109.46934 * 60.00280 * 16 15 14 37 37 H 1.08999 * 109.47130 * 300.00016 * 16 15 14 38 38 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 39 39 H 1.07998 * 120.00194 * 0.02562 * 21 20 17 40 40 H 1.08003 * 120.00038 * 180.27175 * 22 21 20 41 41 H 1.08001 * 119.99802 * 179.83174 * 23 22 21 42 42 H 1.08004 * 119.99346 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00005 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 0.0006 14 6 1.4334 -7.4031 -0.0020 15 6 2.4277 -8.5659 -0.0018 16 6 1.6628 -9.8910 -0.0024 17 6 2.6570 -11.0539 -0.0029 18 1 3.3412 -10.9466 -0.8447 19 8 3.3992 -11.0464 1.2182 20 6 1.9077 -12.3554 -0.1273 21 6 1.3109 -12.9184 0.9852 22 6 0.6198 -14.1101 0.8701 23 6 0.5334 -14.7434 -0.3556 24 6 1.1347 -14.1830 -1.4670 25 6 1.8219 -12.9891 -1.3529 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8720 -3.6043 0.8896 30 1 2.8722 -3.6043 -0.8904 31 1 0.5430 -4.9308 -0.0019 32 1 0.8077 -7.4606 -0.8925 33 1 0.8058 -7.4610 0.8873 34 1 3.0538 -8.5086 0.8887 35 1 3.0550 -8.5077 -0.8914 36 1 1.0365 -9.9485 -0.8927 37 1 1.0358 -9.9489 0.8873 38 1 2.8532 -11.1382 2.0110 39 1 1.3812 -12.4254 1.9434 40 1 0.1497 -14.5478 1.7384 41 1 -0.0043 -15.6758 -0.4450 42 1 1.0668 -14.6777 -2.4247 43 1 2.2921 -12.5515 -2.2212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832023221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:02 Heat of formation + Delta-G solvation = -95.592365 kcal Electronic energy + Delta-G solvation = -21536.937050 eV Core-core repulsion = 18159.635893 eV Total energy + Delta-G solvation = -3377.301157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06917 -39.22920 -37.47876 -34.94968 -34.07087 -32.83039 -31.96205 -31.24126 -29.95827 -28.50040 -25.36417 -24.18212 -23.00013 -21.91121 -21.23037 -20.87596 -19.85763 -17.90577 -16.83667 -16.43466 -16.32816 -16.03670 -15.61038 -15.45309 -14.96676 -14.61903 -14.46981 -14.22674 -13.88364 -13.70408 -13.44135 -13.08996 -12.90872 -12.36712 -12.21194 -12.02619 -11.87887 -11.76399 -11.44789 -11.19349 -11.08063 -11.04629 -10.75616 -10.62533 -10.33050 -10.32791 -9.77864 -9.43881 -9.31199 -9.17828 -9.06366 -8.53186 -8.33846 -6.09867 -4.12567 0.93656 1.00971 3.06377 3.28135 3.35437 3.36004 3.40849 3.71734 4.16148 4.23681 4.42190 4.44825 4.58176 4.69807 4.72637 4.79624 4.99372 5.07346 5.15110 5.18494 5.25351 5.27246 5.49712 5.54259 5.59118 5.63756 5.68325 5.69452 6.06310 6.08894 6.12762 6.22908 6.32297 6.36341 6.37243 6.59549 6.75211 6.95949 7.31628 7.52032 7.61706 7.88723 8.05606 8.28179 8.70731 8.93895 9.52393 11.01770 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.001918 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.721306 B =14595.155551 C =14800.627453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.725 5.725 12 C 0.502 3.498 13 O -0.552 6.552 14 C -0.142 4.142 15 C -0.099 4.099 16 C -0.146 4.146 17 C 0.146 3.854 18 H 0.108 0.892 19 O -0.551 6.551 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.111 4.111 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.372 0.628 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -29.398 -0.099 29.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.375 5.375 12 C 0.288 3.712 13 O -0.430 6.430 14 C -0.182 4.182 15 C -0.137 4.137 16 C -0.183 4.183 17 C 0.087 3.913 18 H 0.126 0.874 19 O -0.356 6.356 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.129 4.129 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.220 0.780 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.895 -29.179 -0.509 29.197 hybrid contribution -0.779 0.879 0.305 1.214 sum -1.674 -28.299 -0.204 28.349 Atomic orbital electron populations 1.69962 1.06090 1.26756 1.50539 1.25003 0.94903 0.99441 0.95008 0.86454 0.80182 0.83315 0.77610 1.19574 1.20935 1.20927 1.21104 0.93305 0.90412 1.51132 0.92192 1.19331 0.94219 0.91204 0.97801 1.21701 0.96038 0.81720 1.00700 1.46372 1.10480 1.06699 1.73958 1.20644 0.88331 0.85698 0.76539 1.90675 1.14151 1.87909 1.50290 1.21689 0.99463 0.93024 1.04004 1.21263 0.97231 0.90953 1.04284 1.22318 0.98217 0.94673 1.03121 1.20889 0.92525 0.89456 0.88411 0.87398 1.86667 1.37496 1.96112 1.15369 1.20658 0.98899 0.97621 0.94116 1.20891 0.97826 0.96251 0.98141 1.21139 0.99118 0.95543 0.97747 1.21188 0.99879 1.00052 0.93020 1.21172 0.97770 0.95899 0.98773 1.21040 0.99335 0.95458 0.97076 0.92909 0.95964 0.95966 0.92656 0.92677 0.76962 0.89297 0.89288 0.90438 0.91157 0.90769 0.91381 0.78026 0.86192 0.85981 0.86099 0.85949 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.73 -12.67 5.56 -60.29 -0.33 -13.00 16 12 C 0.50 8.40 7.83 -10.98 -0.09 8.32 16 13 O -0.55 -11.49 15.98 5.56 0.09 -11.40 16 14 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 15 C -0.10 -1.09 4.40 -26.73 -0.12 -1.21 16 16 C -0.15 -1.17 4.87 -26.73 -0.13 -1.30 16 17 C 0.15 1.23 3.21 -27.88 -0.09 1.14 16 18 H 0.11 0.94 8.00 -51.93 -0.42 0.53 16 19 O -0.55 -5.24 12.72 -35.23 -0.45 -5.69 16 20 C -0.11 -0.91 4.97 -104.63 -0.52 -1.43 16 21 C -0.11 -0.82 9.32 -39.58 -0.37 -1.19 16 22 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 23 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.12 -0.83 10.05 -39.59 -0.40 -1.22 16 25 C -0.11 -0.85 9.67 -39.58 -0.38 -1.24 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 5.92 8.47 -40.82 -0.35 5.57 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.99 7.78 -51.93 -0.40 0.58 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.37 2.29 7.50 45.56 0.34 2.63 16 39 H 0.12 0.64 6.78 -52.49 -0.36 0.29 16 40 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.12 0.78 8.04 -52.49 -0.42 0.36 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -33.81 363.81 -9.33 -43.14 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.21 Total: 3.40 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -3.62 Total: -12.91 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.40 Total: -38.47 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.36 Total: -17.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.81 -9.33 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.452 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds