Wall clock time and date at job start Tue Mar 31 2020 07:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99744 * 2 1 4 4 H 1.48501 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47162 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.46915 * 60.00398 * 3 2 1 7 7 C 1.37872 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00673 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99921 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00109 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99840 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46740 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46876 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47338 * 179.97438 * 16 15 14 18 18 H 1.08999 * 109.47269 * 305.00414 * 17 16 15 19 19 O 1.42903 * 109.46459 * 65.00307 * 17 16 15 20 20 C 1.50696 * 109.47222 * 184.99973 * 17 16 15 21 21 C 1.38234 * 120.00111 * 279.72695 * 20 17 16 22 22 C 1.38238 * 119.99829 * 179.78647 * 21 20 17 23 23 C 1.38239 * 119.99904 * 0.44948 * 22 21 20 24 24 C 1.38233 * 119.99728 * 359.80521 * 23 22 21 25 25 C 1.38229 * 120.00465 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00417 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46818 * 60.00782 * 9 7 2 28 28 H 1.08999 * 109.47284 * 300.00495 * 9 7 2 29 29 H 1.09005 * 109.46682 * 60.00533 * 10 9 7 30 30 H 1.09000 * 109.47491 * 300.00845 * 10 9 7 31 31 H 0.96999 * 120.00388 * 0.02562 * 11 10 9 32 32 H 1.08992 * 109.47506 * 59.99717 * 14 12 11 33 33 H 1.08999 * 109.46876 * 299.99632 * 14 12 11 34 34 H 1.09005 * 109.47575 * 60.00253 * 15 14 12 35 35 H 1.08999 * 109.47254 * 299.99546 * 15 14 12 36 36 H 1.09005 * 109.46934 * 60.00280 * 16 15 14 37 37 H 1.08999 * 109.47130 * 300.00016 * 16 15 14 38 38 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 39 39 H 1.07998 * 120.00194 * 0.02562 * 21 20 17 40 40 H 1.08003 * 120.00038 * 180.27175 * 22 21 20 41 41 H 1.08001 * 119.99802 * 179.83174 * 23 22 21 42 42 H 1.08004 * 119.99346 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00005 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 0.0006 14 6 1.4334 -7.4031 -0.0020 15 6 2.4277 -8.5659 -0.0018 16 6 1.6628 -9.8910 -0.0024 17 6 2.6570 -11.0539 -0.0029 18 1 3.3412 -10.9466 -0.8447 19 8 3.3992 -11.0464 1.2182 20 6 1.9077 -12.3554 -0.1273 21 6 1.3109 -12.9184 0.9852 22 6 0.6198 -14.1101 0.8701 23 6 0.5334 -14.7434 -0.3556 24 6 1.1347 -14.1830 -1.4670 25 6 1.8219 -12.9891 -1.3529 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8720 -3.6043 0.8896 30 1 2.8722 -3.6043 -0.8904 31 1 0.5430 -4.9308 -0.0019 32 1 0.8077 -7.4606 -0.8925 33 1 0.8058 -7.4610 0.8873 34 1 3.0538 -8.5086 0.8887 35 1 3.0550 -8.5077 -0.8914 36 1 1.0365 -9.9485 -0.8927 37 1 1.0358 -9.9489 0.8873 38 1 2.8532 -11.1382 2.0110 39 1 1.3812 -12.4254 1.9434 40 1 0.1497 -14.5478 1.7384 41 1 -0.0043 -15.6758 -0.4450 42 1 1.0668 -14.6777 -2.4247 43 1 2.2921 -12.5515 -2.2212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832023221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:01 Heat of formation + Delta-G solvation = -118.100700 kcal Electronic energy + Delta-G solvation = -21537.913085 eV Core-core repulsion = 18159.635893 eV Total energy + Delta-G solvation = -3378.277191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79326 -40.45256 -38.12700 -36.63537 -35.01022 -34.80924 -32.61547 -31.73565 -31.64174 -29.49964 -26.89901 -25.36564 -23.52204 -23.08554 -22.41930 -21.83789 -21.17793 -18.63406 -18.44991 -17.88194 -17.17818 -16.80832 -16.66965 -16.54071 -16.42710 -15.93333 -15.65410 -14.96214 -14.93019 -14.58208 -14.34145 -14.27602 -14.11743 -13.86102 -13.22889 -12.99326 -12.90305 -12.83524 -12.69038 -12.52085 -12.45424 -12.23655 -11.97388 -11.72805 -11.67296 -11.59144 -11.45549 -11.03884 -10.71132 -10.62071 -9.99132 -9.81414 -9.63060 -8.25552 -6.36016 0.41760 0.50732 1.40018 1.41023 1.54222 1.72066 2.29938 2.47538 2.85578 3.09022 3.54778 3.61687 3.83035 3.93757 4.03502 4.10945 4.17899 4.29412 4.37433 4.41235 4.47811 4.49311 4.62717 4.65535 4.76930 4.82079 4.85381 4.89668 4.97228 5.09011 5.16166 5.29772 5.30843 5.45088 5.52339 5.57203 5.57223 5.63676 5.68204 5.78181 6.11479 6.15582 6.68257 6.77403 6.80420 7.33438 7.34922 8.86388 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.001918 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.721306 B =14595.155551 C =14800.627453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.721 5.721 12 C 0.498 3.502 13 O -0.597 6.597 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.133 4.133 17 C 0.149 3.851 18 H 0.097 0.903 19 O -0.571 6.571 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.126 4.126 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.412 0.588 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.385 0.615 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -30.377 0.085 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.372 5.372 12 C 0.287 3.713 13 O -0.478 6.478 14 C -0.169 4.169 15 C -0.133 4.133 16 C -0.170 4.170 17 C 0.090 3.910 18 H 0.115 0.885 19 O -0.379 6.379 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.248 0.752 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.235 0.765 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.893 -30.182 -0.320 30.243 hybrid contribution -0.483 1.122 0.255 1.248 sum -2.376 -29.060 -0.065 29.157 Atomic orbital electron populations 1.70055 1.07482 1.27966 1.51015 1.25871 0.95830 1.03090 0.94394 0.85390 0.78894 0.78754 0.77968 1.19118 1.20133 1.20114 1.21508 0.93543 0.92066 1.51525 0.92500 1.19139 0.94208 0.91736 0.96402 1.21184 0.95081 0.82784 0.99468 1.46221 1.11145 1.05665 1.74162 1.21646 0.88057 0.86881 0.74708 1.90658 1.16458 1.88571 1.52112 1.21731 0.99247 0.89208 1.06668 1.21190 0.97115 0.92591 1.02403 1.22204 0.97866 0.92517 1.04441 1.20819 0.92357 0.90080 0.87784 0.88466 1.86631 1.38719 1.96209 1.16343 1.20653 0.99491 0.97601 0.94673 1.21151 0.97661 0.96605 0.98618 1.21444 0.98994 0.95463 0.98533 1.21511 0.99701 1.00735 0.92951 1.21438 0.97593 0.95799 0.99762 1.21257 0.99795 0.96007 0.97394 0.92498 0.97219 0.97216 0.93929 0.93940 0.75236 0.86479 0.86403 0.92566 0.92991 0.89631 0.89733 0.76517 0.84620 0.84201 0.84289 0.84419 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.29 21.44 0.28 -54.00 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -30.99 9.11 25.60 0.23 -30.75 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.14 6.10 5.61 86.38 0.48 6.58 16 11 N -0.72 -24.78 5.56 -463.06 -2.57 -27.36 16 12 C 0.50 16.34 7.83 87.66 0.69 17.02 16 13 O -0.60 -25.19 15.98 -3.03 -0.05 -25.23 16 14 C -0.13 -2.61 5.70 29.85 0.17 -2.44 16 15 C -0.09 -1.98 4.40 30.59 0.13 -1.85 16 16 C -0.13 -1.87 4.87 30.60 0.15 -1.72 16 17 C 0.15 2.38 3.21 29.85 0.10 2.48 16 18 H 0.10 1.71 8.00 -2.39 -0.02 1.69 16 19 O -0.57 -10.54 12.72 -148.98 -1.90 -12.44 16 20 C -0.12 -1.85 4.97 -19.87 -0.10 -1.95 16 21 C -0.12 -1.57 9.32 22.27 0.21 -1.37 16 22 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 23 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 24 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 25 C -0.13 -1.83 9.67 22.27 0.22 -1.61 16 26 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 11.74 8.47 -92.71 -0.79 10.96 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.42 7.78 -2.38 -0.02 1.40 16 35 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.38 4.31 7.50 -74.06 -0.56 3.76 16 39 H 0.14 1.18 6.78 -2.91 -0.02 1.16 16 40 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.57 8.04 -2.91 -0.02 1.55 16 Total: -1.00 -73.28 363.81 1.02 -72.26 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.34 Total: 18.28 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.56 Total: -17.42 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.29 Total: -81.36 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -1.94 Total: -37.67 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.28 1.02 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832023221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.842 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds