Wall clock time and date at job start Tue Mar 31 2020 08:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48499 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46945 * 300.00082 * 3 2 1 6 6 H 1.48501 * 109.47115 * 59.99875 * 3 2 1 7 7 C 1.37875 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99469 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47363 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47380 * 174.90304 * 10 9 7 12 12 C 1.46898 * 111.00117 * 196.49896 * 11 10 9 13 13 C 1.52998 * 109.47029 * 169.99975 * 12 11 10 14 14 C 1.53001 * 109.46913 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47066 * 179.97438 * 14 13 12 16 16 O 1.20824 * 119.99949 * 0.02562 * 15 14 13 17 17 O 1.34230 * 120.00083 * 180.02562 * 15 14 13 18 18 C 1.46896 * 110.99755 * 72.54648 * 11 10 9 19 19 C 1.50697 * 109.47348 * 63.76342 * 18 11 10 20 20 C 1.38236 * 120.00191 * 90.13924 * 19 18 11 21 21 C 1.38230 * 120.00167 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.99989 * 359.96132 * 21 20 19 23 23 C 1.38234 * 120.00166 * 0.27066 * 22 21 20 24 24 C 1.38235 * 120.00001 * 270.11748 * 19 18 11 25 25 H 0.97004 * 120.00201 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47019 * 60.00215 * 9 7 2 27 27 H 1.09005 * 109.47308 * 300.00425 * 9 7 2 28 28 H 1.08998 * 109.46848 * 54.90033 * 10 9 7 29 29 H 1.08998 * 109.46846 * 294.90694 * 10 9 7 30 30 H 1.08996 * 109.47131 * 290.00100 * 12 11 10 31 31 H 1.09000 * 109.46642 * 50.00080 * 12 11 10 32 32 H 1.08996 * 109.47266 * 300.00042 * 13 12 11 33 33 H 1.09004 * 109.47149 * 60.00037 * 13 12 11 34 34 H 1.08996 * 109.47089 * 300.00027 * 14 13 12 35 35 H 1.09000 * 109.46801 * 60.00080 * 14 13 12 36 36 H 0.96699 * 116.99815 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.47686 * 303.75992 * 18 11 10 38 38 H 1.09004 * 109.47348 * 183.76074 * 18 11 10 39 39 H 1.08001 * 119.99774 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.99951 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99976 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.00178 * 179.72380 * 23 22 21 43 43 H 1.07996 * 120.00032 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5148 -4.9308 0.1225 12 6 2.4169 -6.0215 0.5156 13 6 1.5933 -7.2599 0.8749 14 6 2.5328 -8.3957 1.2849 15 6 1.7216 -9.6153 1.6395 16 8 0.5158 -9.5798 1.5708 17 8 2.3386 -10.7411 2.0316 18 6 0.8090 -5.2548 -1.1243 19 6 1.8120 -5.4688 -2.2284 20 6 2.3222 -6.7319 -2.4636 21 6 3.2418 -6.9283 -3.4767 22 6 3.6508 -5.8618 -4.2552 23 6 3.1444 -4.5978 -4.0170 24 6 2.2217 -4.4021 -3.0064 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.9304 -3.5543 0.8403 29 1 2.8102 -3.6571 -0.9326 30 1 3.0847 -6.2572 -0.3130 31 1 3.0050 -5.7129 1.3799 32 1 0.9255 -7.0242 1.7035 33 1 1.0051 -7.5684 0.0106 34 1 3.2009 -8.6315 0.4567 35 1 3.1206 -8.0869 2.1494 36 1 1.7762 -11.4973 2.2482 37 1 0.1455 -4.4321 -1.3907 38 1 0.2232 -6.1634 -0.9846 39 1 2.0021 -7.5653 -1.8558 40 1 3.6407 -7.9151 -3.6602 41 1 4.3691 -6.0153 -5.0471 42 1 3.4673 -3.7637 -4.6223 43 1 1.8233 -3.4153 -2.8226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:27 Heat of formation + Delta-G solvation = -78.521519 kcal Electronic energy + Delta-G solvation = -23214.899136 eV Core-core repulsion = 19838.338227 eV Total energy + Delta-G solvation = -3376.560909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.43363 -39.62297 -37.14451 -36.33502 -33.96501 -32.86318 -31.16974 -30.71660 -29.50176 -27.13935 -25.77155 -23.80322 -22.35910 -21.98618 -21.41070 -20.33534 -19.48140 -18.20512 -16.82810 -16.60555 -16.39548 -16.26144 -15.40884 -15.19835 -14.99386 -14.46341 -14.28339 -14.08346 -13.51288 -13.19745 -13.15759 -12.55576 -12.37656 -12.29223 -12.17119 -11.87275 -11.70623 -11.39968 -11.26466 -11.21085 -10.98458 -10.90560 -10.77284 -10.72539 -10.52922 -10.37983 -9.84511 -9.38998 -9.10551 -8.67941 -8.52584 -8.31918 -7.72380 -5.98525 -4.00725 1.52752 1.59701 2.03943 2.85005 3.31276 3.39135 3.42640 3.96222 4.37623 4.52984 4.82305 4.84816 5.03581 5.03705 5.10507 5.16818 5.31967 5.37622 5.42768 5.45174 5.56011 5.63387 5.69836 5.81991 5.89709 6.09351 6.17253 6.23198 6.26632 6.28489 6.35386 6.45972 6.53476 6.62321 6.72306 6.88842 7.01160 7.21356 7.48877 7.54560 7.70308 7.80348 7.92500 8.11067 8.45005 9.07097 9.63048 11.12698 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.004139 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.771667 B = 6762.812812 C = 8233.737885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.054 3.946 11 N -0.522 5.522 12 C 0.047 3.953 13 C -0.107 4.107 14 C -0.113 4.113 15 C 0.477 3.523 16 O -0.512 6.512 17 O -0.522 6.522 18 C 0.086 3.914 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.096 4.096 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.024 0.976 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.408 0.592 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 -18.892 -2.712 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.073 4.073 11 N -0.244 5.244 12 C -0.081 4.081 13 C -0.145 4.145 14 C -0.151 4.151 15 C 0.319 3.681 16 O -0.400 6.400 17 O -0.334 6.334 18 C -0.042 4.042 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.115 4.115 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.155 -18.346 -2.416 19.501 hybrid contribution 0.778 0.344 -0.511 0.992 sum 6.933 -18.002 -2.927 19.512 Atomic orbital electron populations 1.69984 1.05972 1.26403 1.50770 1.24978 0.94789 0.99080 0.95394 0.86587 0.80114 0.84025 0.77572 1.19808 1.21079 1.21028 1.21216 0.92944 0.91040 1.50646 0.92854 1.19052 0.93904 0.89982 0.97702 1.22492 0.97139 0.88301 0.99339 1.62512 1.29769 1.02897 1.29198 1.22164 0.94549 0.91342 1.00094 1.21482 0.97568 0.92325 1.03145 1.21387 0.99106 0.90161 1.04420 1.23674 0.87470 0.84234 0.72692 1.90747 1.16224 1.83850 1.49166 1.84553 1.45941 1.23636 1.79266 1.21349 0.94685 1.02447 0.85675 1.20769 0.99668 0.93279 0.97630 1.21056 0.97789 0.96596 0.97843 1.21039 0.98683 0.98563 0.96575 1.21078 1.00387 0.93190 0.99825 1.21193 0.97616 0.96988 0.98247 1.21389 0.96603 0.99460 0.94048 0.93090 0.96700 0.95712 0.92353 0.94931 0.94275 0.90985 0.90031 0.91015 0.87837 0.87502 0.73383 0.89016 0.90524 0.86621 0.86721 0.86699 0.86265 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.78 4.93 -27.88 -0.14 0.65 16 10 C 0.05 1.10 4.70 -3.82 -0.02 1.08 16 11 N -0.52 -9.04 4.66 -236.08 -1.10 -10.14 16 12 C 0.05 0.64 4.51 -3.83 -0.02 0.62 16 13 C -0.11 -1.28 4.19 -26.73 -0.11 -1.39 16 14 C -0.11 -1.01 5.81 -27.88 -0.16 -1.17 16 15 C 0.48 4.88 8.33 36.01 0.30 5.18 16 16 O -0.51 -7.08 16.74 -18.75 -0.31 -7.39 16 17 O -0.52 -4.02 13.42 -39.26 -0.53 -4.55 16 18 C 0.09 1.40 5.18 -4.98 -0.03 1.37 16 19 C -0.11 -1.69 4.09 -104.63 -0.43 -2.12 16 20 C -0.11 -1.49 7.76 -39.59 -0.31 -1.80 16 21 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 22 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 23 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 24 C -0.10 -1.55 7.77 -39.58 -0.31 -1.86 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.01 0.39 6.92 -51.93 -0.36 0.03 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.20 7.80 -51.93 -0.40 0.80 16 29 H 0.03 0.66 5.26 -51.93 -0.27 0.39 16 30 H 0.04 0.53 5.66 -51.93 -0.29 0.23 16 31 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 32 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.07 0.89 5.53 -51.93 -0.29 0.61 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 1.52 9.10 45.56 0.41 1.94 16 37 H 0.09 1.67 6.65 -51.93 -0.35 1.33 16 38 H 0.08 1.13 6.40 -51.93 -0.33 0.79 16 39 H 0.12 1.33 6.77 -52.49 -0.36 0.97 16 40 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 43 H 0.13 2.39 7.86 -52.49 -0.41 1.98 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -32.62 349.50 -9.33 -41.95 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.56 Total: 2.88 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.82 Total: -18.64 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.36 Total: -35.98 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.84 Total: -11.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.62 -9.33 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.567 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds