Wall clock time and date at job start Tue Mar 31 2020 08:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48499 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46945 * 300.00082 * 3 2 1 6 6 H 1.48501 * 109.47115 * 59.99875 * 3 2 1 7 7 C 1.37875 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99469 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47363 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47380 * 174.90304 * 10 9 7 12 12 C 1.46898 * 111.00117 * 196.49896 * 11 10 9 13 13 C 1.52998 * 109.47029 * 169.99975 * 12 11 10 14 14 C 1.53001 * 109.46913 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47066 * 179.97438 * 14 13 12 16 16 O 1.20824 * 119.99949 * 0.02562 * 15 14 13 17 17 O 1.34230 * 120.00083 * 180.02562 * 15 14 13 18 18 C 1.46896 * 110.99755 * 72.54648 * 11 10 9 19 19 C 1.50697 * 109.47348 * 63.76342 * 18 11 10 20 20 C 1.38236 * 120.00191 * 90.13924 * 19 18 11 21 21 C 1.38230 * 120.00167 * 179.97438 * 20 19 18 22 22 C 1.38232 * 119.99989 * 359.96132 * 21 20 19 23 23 C 1.38234 * 120.00166 * 0.27066 * 22 21 20 24 24 C 1.38235 * 120.00001 * 270.11748 * 19 18 11 25 25 H 0.97004 * 120.00201 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47019 * 60.00215 * 9 7 2 27 27 H 1.09005 * 109.47308 * 300.00425 * 9 7 2 28 28 H 1.08998 * 109.46848 * 54.90033 * 10 9 7 29 29 H 1.08998 * 109.46846 * 294.90694 * 10 9 7 30 30 H 1.08996 * 109.47131 * 290.00100 * 12 11 10 31 31 H 1.09000 * 109.46642 * 50.00080 * 12 11 10 32 32 H 1.08996 * 109.47266 * 300.00042 * 13 12 11 33 33 H 1.09004 * 109.47149 * 60.00037 * 13 12 11 34 34 H 1.08996 * 109.47089 * 300.00027 * 14 13 12 35 35 H 1.09000 * 109.46801 * 60.00080 * 14 13 12 36 36 H 0.96699 * 116.99815 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.47686 * 303.75992 * 18 11 10 38 38 H 1.09004 * 109.47348 * 183.76074 * 18 11 10 39 39 H 1.08001 * 119.99774 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.99951 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99976 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.00178 * 179.72380 * 23 22 21 43 43 H 1.07996 * 120.00032 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5148 -4.9308 0.1225 12 6 2.4169 -6.0215 0.5156 13 6 1.5933 -7.2599 0.8749 14 6 2.5328 -8.3957 1.2849 15 6 1.7216 -9.6153 1.6395 16 8 0.5158 -9.5798 1.5708 17 8 2.3386 -10.7411 2.0316 18 6 0.8090 -5.2548 -1.1243 19 6 1.8120 -5.4688 -2.2284 20 6 2.3222 -6.7319 -2.4636 21 6 3.2418 -6.9283 -3.4767 22 6 3.6508 -5.8618 -4.2552 23 6 3.1444 -4.5978 -4.0170 24 6 2.2217 -4.4021 -3.0064 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.9304 -3.5543 0.8403 29 1 2.8102 -3.6571 -0.9326 30 1 3.0847 -6.2572 -0.3130 31 1 3.0050 -5.7129 1.3799 32 1 0.9255 -7.0242 1.7035 33 1 1.0051 -7.5684 0.0106 34 1 3.2009 -8.6315 0.4567 35 1 3.1206 -8.0869 2.1494 36 1 1.7762 -11.4973 2.2482 37 1 0.1455 -4.4321 -1.3907 38 1 0.2232 -6.1634 -0.9846 39 1 2.0021 -7.5653 -1.8558 40 1 3.6407 -7.9151 -3.6602 41 1 4.3691 -6.0153 -5.0471 42 1 3.4673 -3.7637 -4.6223 43 1 1.8233 -3.4153 -2.8226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:26 Heat of formation + Delta-G solvation = -99.460026 kcal Electronic energy + Delta-G solvation = -23215.807098 eV Core-core repulsion = 19838.338227 eV Total energy + Delta-G solvation = -3377.468871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25629 -40.75734 -38.34542 -37.10129 -35.52323 -34.42914 -32.56159 -31.76946 -31.08907 -28.27581 -27.34166 -25.38997 -23.47859 -23.04973 -22.69962 -21.43526 -20.84908 -18.96755 -18.57396 -17.69849 -17.48212 -17.21538 -16.61509 -16.51396 -16.44830 -16.04884 -15.51678 -15.17947 -14.71972 -14.33542 -14.19444 -14.02218 -14.00390 -13.53869 -13.23347 -13.12275 -12.87584 -12.82804 -12.60121 -12.49776 -12.41645 -12.31782 -12.13242 -11.85059 -11.74801 -11.60131 -11.51045 -11.29272 -11.15263 -10.53130 -9.74486 -9.62982 -9.11056 -8.18191 -6.28953 0.46007 0.52737 1.28121 1.39686 1.40155 1.53203 2.18014 2.41125 2.87814 3.15366 3.22914 3.89823 3.92075 3.98140 4.07494 4.17119 4.20063 4.30119 4.35041 4.50870 4.58501 4.64239 4.66804 4.70624 4.78595 4.79563 4.87611 4.96579 5.10923 5.15082 5.18817 5.22491 5.36236 5.49507 5.58858 5.65480 5.67372 5.69944 5.76207 5.83630 6.14350 6.16025 6.34776 6.36940 6.88808 7.05830 7.39990 8.94058 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.004139 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.771667 B = 6762.812812 C = 8233.737885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.074 3.926 11 N -0.538 5.538 12 C 0.051 3.949 13 C -0.098 4.098 14 C -0.107 4.107 15 C 0.484 3.516 16 O -0.557 6.557 17 O -0.514 6.514 18 C 0.092 3.908 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.124 4.124 25 H 0.262 0.738 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.426 0.574 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 -20.995 -3.291 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.076 0.924 9 C 0.005 3.995 10 C -0.053 4.053 11 N -0.260 5.260 12 C -0.076 4.076 13 C -0.136 4.136 14 C -0.145 4.145 15 C 0.328 3.672 16 O -0.448 6.448 17 O -0.327 6.327 18 C -0.036 4.036 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.007 0.993 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.287 0.713 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.145 0.855 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.062 -20.490 -2.988 22.603 hybrid contribution -0.136 0.895 -0.350 0.971 sum 8.925 -19.595 -3.338 21.789 Atomic orbital electron populations 1.70127 1.07807 1.27551 1.51725 1.25929 0.95674 1.03181 0.94805 0.85436 0.79152 0.78957 0.77726 1.18496 1.20456 1.20451 1.21621 0.93364 0.92239 1.50392 0.92357 1.18840 0.94090 0.91950 0.94630 1.22055 0.95590 0.88405 0.99288 1.62381 1.30514 1.02994 1.30100 1.22202 0.94287 0.90629 1.00494 1.21308 0.97571 0.92600 1.02100 1.21350 0.98418 0.88512 1.06195 1.23812 0.86779 0.84931 0.71645 1.90747 1.18095 1.84631 1.51286 1.84506 1.45999 1.23710 1.78519 1.21189 0.94778 1.01531 0.86064 1.20610 1.00059 0.94337 0.97487 1.21245 0.97619 0.95738 0.98392 1.21470 0.97301 1.00061 0.95105 1.21450 1.00105 0.92170 1.00227 1.21355 0.97284 0.98611 0.97747 1.21208 0.98555 0.98278 0.96232 0.92889 0.99230 0.99322 0.92364 0.94787 0.93135 0.90497 0.92211 0.91586 0.85188 0.85596 0.71297 0.92663 0.88963 0.84655 0.83048 0.83573 0.85497 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.04 2.30 4.93 29.85 0.15 2.45 16 10 C 0.07 3.15 4.70 86.31 0.41 3.56 16 11 N -0.54 -19.28 4.66 -900.82 -4.20 -23.48 16 12 C 0.05 1.35 4.51 86.30 0.39 1.74 16 13 C -0.10 -2.20 4.19 30.59 0.13 -2.07 16 14 C -0.11 -1.60 5.81 29.85 0.17 -1.42 16 15 C 0.48 8.79 8.33 71.24 0.59 9.39 16 16 O -0.56 -14.84 16.74 21.97 0.37 -14.48 16 17 O -0.51 -6.37 13.42 -51.42 -0.69 -7.06 16 18 C 0.09 3.14 5.18 85.56 0.44 3.58 16 19 C -0.12 -3.76 4.09 -19.87 -0.08 -3.84 16 20 C -0.11 -2.62 7.76 22.27 0.17 -2.45 16 21 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 22 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 23 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 24 C -0.12 -4.16 7.77 22.27 0.17 -3.98 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H -0.01 -0.62 6.92 -2.39 -0.02 -0.64 16 27 H -0.01 -0.71 8.14 -2.38 -0.02 -0.72 16 28 H 0.06 2.45 7.80 -2.39 -0.02 2.43 16 29 H 0.03 1.44 5.26 -2.39 -0.01 1.43 16 30 H 0.05 1.24 5.66 -2.39 -0.01 1.22 16 31 H 0.08 1.95 7.86 -2.39 -0.02 1.93 16 32 H 0.06 1.61 8.10 -2.39 -0.02 1.60 16 33 H 0.07 1.56 5.53 -2.38 -0.01 1.55 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.43 2.04 9.10 -74.06 -0.67 1.36 16 37 H 0.05 2.24 6.65 -2.39 -0.02 2.23 16 38 H 0.09 2.79 6.40 -2.39 -0.02 2.78 16 39 H 0.14 2.63 6.77 -2.91 -0.02 2.61 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.09 3.82 7.86 -2.91 -0.02 3.80 16 Total: -1.00 -74.37 349.50 2.04 -72.33 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.34 Total: 14.58 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.91 Total: -31.21 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.92 Total: -80.97 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.32 Total: -21.54 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.37 2.04 -72.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.130 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds