Wall clock time and date at job start Tue Mar 31 2020 08:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86794 * 119.99835 * 2 1 4 4 H 1.48508 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47536 * 300.00009 * 3 2 1 6 6 H 1.48501 * 109.47321 * 60.00376 * 3 2 1 7 7 C 1.38656 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99906 * 179.97438 * 7 2 1 9 9 O 1.34825 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00160 * 174.68446 * 9 7 2 11 11 C 1.38936 * 120.04287 * 183.95471 * 10 9 7 12 12 C 1.38115 * 120.04120 * 179.97438 * 11 10 9 13 13 C 1.38235 * 120.12055 * 359.78426 * 12 11 10 14 14 C 1.38785 * 120.08288 * 0.46583 * 13 12 11 15 15 O 1.35897 * 120.02004 * 179.79025 * 14 13 12 16 16 C 1.42902 * 116.99959 * 359.72580 * 15 14 13 17 17 C 1.52996 * 109.46793 * 179.97438 * 16 15 14 18 18 N 1.46901 * 109.47284 * 61.49645 * 17 16 15 19 19 C 1.46839 * 111.00103 * 52.28151 * 18 17 16 20 20 C 1.53035 * 109.52335 * 185.84447 * 19 18 17 21 21 C 1.53124 * 109.27982 * 300.81805 * 20 19 18 22 22 C 1.53123 * 109.15430 * 57.65709 * 21 20 19 23 23 C 1.46844 * 111.00050 * 176.49587 * 18 17 16 24 24 C 1.38614 * 119.95495 * 359.51324 * 14 13 12 25 25 H 0.96996 * 120.00348 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.98062 * 359.97218 * 11 10 9 27 27 H 1.07997 * 119.93511 * 180.02562 * 12 11 10 28 28 H 1.08002 * 119.95400 * 180.26064 * 13 12 11 29 29 H 1.09004 * 109.46968 * 59.99979 * 16 15 14 30 30 H 1.09002 * 109.46931 * 299.99901 * 16 15 14 31 31 H 1.09000 * 109.47405 * 301.48940 * 17 16 15 32 32 H 1.09003 * 109.47197 * 181.49357 * 17 16 15 33 33 H 1.09003 * 109.46304 * 65.82658 * 19 18 17 34 34 H 1.09005 * 109.46905 * 305.85814 * 19 18 17 35 35 H 1.09003 * 109.50483 * 180.88125 * 20 19 18 36 36 H 1.08997 * 109.50808 * 60.76137 * 20 19 18 37 37 H 1.08995 * 109.52755 * 177.55534 * 21 20 19 38 38 H 1.08993 * 109.52359 * 297.75692 * 21 20 19 39 39 H 1.09000 * 109.50663 * 62.28568 * 22 21 20 40 40 H 1.08998 * 109.50183 * 182.40897 * 22 21 20 41 41 H 1.09007 * 109.46270 * 54.14425 * 23 18 17 42 42 H 1.08999 * 109.46373 * 294.17276 * 23 18 17 43 43 H 1.08002 * 120.05599 * 180.23051 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5043 -0.1131 11 6 1.4350 -4.7371 -0.2027 12 6 2.1826 -5.8927 -0.3178 13 6 3.5630 -5.8257 -0.3486 14 6 4.2022 -4.5974 -0.2543 15 8 5.5594 -4.5335 -0.2805 16 6 6.2649 -5.7703 -0.4010 17 6 7.7706 -5.4992 -0.4139 18 7 8.1651 -4.8662 0.8517 19 6 7.6903 -5.6469 2.0011 20 6 7.9905 -4.8868 3.2949 21 6 9.4994 -4.6497 3.4035 22 6 9.9766 -3.8767 2.1708 23 6 9.6187 -4.6663 0.9095 24 6 3.4551 -3.4355 -0.1392 25 1 -0.4850 0.8400 0.0004 26 1 0.3566 -4.7918 -0.1823 27 1 1.6877 -6.8500 -0.3877 28 1 4.1448 -6.7307 -0.4429 29 1 5.9770 -6.2638 -1.3293 30 1 6.0183 -6.4131 0.4440 31 1 8.0132 -4.8351 -1.2435 32 1 8.3082 -6.4400 -0.5325 33 1 8.1984 -6.6111 2.0200 34 1 6.6152 -5.8049 1.9139 35 1 7.6521 -5.4737 4.1488 36 1 7.4716 -3.9283 3.2827 37 1 9.7136 -4.0708 4.3018 38 1 10.0159 -5.6081 3.4548 39 1 9.4888 -2.9024 2.1408 40 1 11.0570 -3.7421 2.2214 41 1 9.9444 -4.1118 0.0293 42 1 10.1178 -5.6350 0.9336 43 1 3.9507 -2.4785 -0.0694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842110784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:15 Heat of formation + Delta-G solvation = -61.113844 kcal Electronic energy + Delta-G solvation = -23121.845820 eV Core-core repulsion = 19746.039764 eV Total energy + Delta-G solvation = -3375.806056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 7.01 seconds Orbital eigenvalues (eV) -41.23278 -40.22292 -39.39129 -37.29130 -34.86281 -34.26877 -31.90756 -31.43245 -30.33716 -29.61406 -27.34792 -25.63660 -23.98065 -23.52068 -23.29893 -21.83769 -20.62327 -19.88404 -19.45315 -17.67469 -17.43620 -16.81657 -16.76572 -16.16279 -16.04999 -15.85029 -15.42236 -15.40774 -15.22408 -14.91921 -14.57694 -14.28863 -14.12164 -13.93300 -13.54607 -13.37467 -13.11712 -12.90758 -12.66529 -12.60299 -12.44694 -12.14657 -12.12337 -11.92397 -11.65405 -11.60178 -11.35524 -11.25356 -11.10956 -10.79814 -9.35066 -9.18068 -8.91797 -8.49419 -6.18163 0.60584 0.70715 1.33926 1.42018 1.52428 2.16453 2.30881 2.80829 2.93214 3.15125 3.49435 3.79476 3.87610 3.96890 4.03420 4.09873 4.14516 4.27575 4.30147 4.35436 4.44251 4.48687 4.51169 4.59330 4.65508 4.65832 4.81186 4.83399 4.91379 4.95739 5.03332 5.04083 5.07103 5.11237 5.22025 5.30673 5.45282 5.47209 5.62876 5.66875 5.96397 6.02371 6.15953 6.20579 6.66025 6.95556 7.73263 8.73600 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.004057 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.921951 B = 6899.817212 C = 8235.843609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.017 4.017 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.416 4.416 8 H 0.095 0.905 9 O -0.224 6.224 10 C 0.151 3.849 11 C -0.240 4.240 12 C -0.028 4.028 13 C -0.276 4.276 14 C 0.171 3.829 15 O -0.317 6.317 16 C 0.051 3.949 17 C 0.061 3.939 18 N -0.557 5.557 19 C 0.053 3.947 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.118 4.118 23 C 0.057 3.943 24 C -0.286 4.286 25 H 0.274 0.726 26 H 0.118 0.882 27 H 0.163 0.837 28 H 0.155 0.845 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.419 -14.253 2.263 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.215 4.215 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.113 0.887 9 O -0.130 6.130 10 C 0.099 3.901 11 C -0.259 4.259 12 C -0.045 4.045 13 C -0.295 4.295 14 C 0.125 3.875 15 O -0.231 6.231 16 C -0.024 4.024 17 C -0.067 4.067 18 N -0.282 5.282 19 C -0.074 4.074 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.070 4.070 24 C -0.306 4.306 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 19.932 -13.453 2.312 24.158 hybrid contribution 0.142 0.193 -0.051 0.245 sum 20.073 -13.259 2.261 24.163 Atomic orbital electron populations 1.70173 1.07844 1.28855 1.48559 1.26534 0.96856 1.02506 0.95642 0.84572 0.77990 0.74987 0.78915 1.18187 1.18863 1.18872 1.21816 0.92361 0.81526 1.53453 0.88727 1.83954 1.35605 1.12568 1.80835 1.19580 0.90132 0.88225 0.92128 1.20446 1.00265 0.90228 1.14969 1.20931 0.93020 0.97364 0.93230 1.21157 0.95701 0.96145 1.16528 1.18714 0.82501 0.93364 0.92919 1.86153 1.14902 1.34306 1.87694 1.23198 0.91807 0.84954 1.02430 1.22187 0.92174 0.99566 0.92724 1.61835 1.14141 1.50251 1.02018 1.22136 1.00021 0.94742 0.90550 1.21590 0.97201 1.00311 0.96704 1.21556 0.94927 1.00733 0.98158 1.21600 1.01197 0.98804 0.93978 1.22114 0.86347 0.99442 0.99133 1.20289 0.92898 0.98142 1.19298 0.91652 0.86344 0.81954 0.82790 0.89942 0.90927 0.89970 0.90160 0.93582 0.91819 0.90654 0.93521 0.91359 0.91101 0.92997 0.89796 0.90631 0.93713 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.27 13.67 21.61 0.30 -56.97 16 2 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 3 Si 1.02 44.80 29.55 68.60 2.03 46.82 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.42 -25.46 9.48 67.92 0.64 -24.82 16 8 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 9 O -0.22 -14.00 9.76 -22.68 -0.22 -14.22 16 10 C 0.15 7.92 6.65 22.56 0.15 8.07 16 11 C -0.24 -10.46 9.99 22.41 0.22 -10.23 16 12 C -0.03 -0.92 10.03 22.24 0.22 -0.70 16 13 C -0.28 -8.93 9.04 22.40 0.20 -8.72 16 14 C 0.17 6.73 6.68 22.49 0.15 6.88 16 15 O -0.32 -11.04 10.03 -92.39 -0.93 -11.97 16 16 C 0.05 1.16 4.35 71.98 0.31 1.47 16 17 C 0.06 1.17 5.52 86.30 0.48 1.65 16 18 N -0.56 -12.34 4.65 -896.36 -4.17 -16.51 16 19 C 0.05 1.10 5.05 86.33 0.44 1.53 16 20 C -0.12 -2.45 6.09 30.65 0.19 -2.26 16 21 C -0.12 -1.88 6.00 30.68 0.18 -1.70 16 22 C -0.12 -2.00 6.09 30.65 0.19 -1.82 16 23 C 0.06 0.99 5.46 86.33 0.47 1.46 16 24 C -0.29 -13.99 9.11 22.48 0.20 -13.79 16 25 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 27 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 28 H 0.15 3.63 6.29 -2.91 -0.02 3.61 16 29 H 0.08 1.57 7.65 -2.38 -0.02 1.55 16 30 H 0.07 1.50 5.63 -2.39 -0.01 1.49 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 1.51 5.81 -2.38 -0.01 1.50 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 42 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.11 5.80 5.62 -2.91 -0.02 5.79 16 Total: -1.00 -74.65 344.19 2.52 -72.13 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.99 Total: 24.24 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 4.52 Total: -43.53 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -3.88 Total: -73.49 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.15 Total: -26.18 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.65 2.52 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842110784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.020 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.01 seconds