Wall clock time and date at job start Tue Mar 31 2020 07:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47472 * 273.27204 * 3 2 1 5 5 H 1.48502 * 109.47043 * 33.27245 * 3 2 1 6 6 H 1.48502 * 109.47037 * 153.27054 * 3 2 1 7 7 C 1.37877 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 3.62209 * 7 2 1 9 9 C 1.50699 * 120.00352 * 183.61961 * 7 2 1 10 10 O 1.42899 * 110.77613 * 60.38859 * 9 7 2 11 11 C 1.55158 * 110.72132 * 297.15738 * 9 7 2 12 12 C 1.55133 * 101.48533 * 205.96591 * 11 9 7 13 13 N 1.47424 * 104.71954 * 37.29176 * 12 11 9 14 14 C 1.34776 * 125.64296 * 155.81632 * 13 12 11 15 15 O 1.21614 * 119.99950 * 179.68833 * 14 13 12 16 16 C 1.47099 * 120.00507 * 359.69628 * 14 13 12 17 17 C 1.32990 * 120.00367 * 177.52335 * 16 14 13 18 18 C 1.50702 * 120.00066 * 186.59698 * 17 16 14 19 19 C 1.53003 * 117.49755 * 177.41743 * 18 17 16 20 20 C 1.52999 * 60.00003 * 107.48840 * 19 18 17 21 21 C 1.50696 * 119.99969 * 6.60425 * 17 16 14 22 22 C 1.53003 * 117.50305 * 132.26984 * 21 17 16 23 23 C 1.53000 * 117.50387 * 63.64306 * 21 17 16 24 24 C 1.47021 * 108.70579 * 335.55387 * 13 12 11 25 25 H 0.97007 * 119.99548 * 359.97438 * 1 2 3 26 26 H 0.96709 * 114.00042 * 61.78981 * 10 9 7 27 27 H 1.09006 * 111.00084 * 324.20281 * 11 9 7 28 28 H 1.09002 * 111.00561 * 88.01659 * 11 9 7 29 29 H 1.09002 * 110.49144 * 278.45089 * 12 11 9 30 30 H 1.08998 * 110.33878 * 156.06022 * 12 11 9 31 31 H 1.08002 * 119.99544 * 357.52350 * 16 14 13 32 32 H 1.08998 * 115.56307 * 31.72273 * 18 17 16 33 33 H 1.09003 * 117.49280 * 214.98092 * 19 18 17 34 34 H 1.08999 * 117.49990 * 359.97438 * 19 18 17 35 35 H 1.08995 * 117.49590 * 252.50738 * 20 19 18 36 36 H 1.09003 * 117.49485 * 107.48865 * 20 19 18 37 37 H 1.09000 * 115.54535 * 277.97211 * 21 17 16 38 38 H 1.08999 * 117.49364 * 359.97438 * 22 21 17 39 39 H 1.08996 * 117.49882 * 145.02117 * 22 21 17 40 40 H 1.08995 * 117.49945 * 214.98200 * 23 21 17 41 41 H 1.08997 * 117.49540 * 0.02562 * 23 21 17 42 42 H 1.08996 * 109.87995 * 120.70402 * 24 13 12 43 43 H 1.09003 * 109.87997 * 241.71298 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4275 2.0864 -1.3977 5 1 1.4830 2.6317 0.7681 6 1 3.5796 1.4211 0.6297 7 6 2.0045 -1.1941 -0.0005 8 1 1.4661 -2.1284 -0.0600 9 6 3.5092 -1.1955 0.0819 10 8 3.9513 -0.5734 1.2899 11 6 4.1274 -0.4927 -1.1556 12 6 5.5207 -1.1706 -1.2318 13 7 5.2760 -2.5735 -0.8506 14 6 6.0429 -3.6265 -1.1963 15 8 5.7473 -4.7441 -0.8186 16 6 7.2377 -3.4242 -2.0302 17 6 8.0217 -4.4556 -2.3303 18 6 9.3220 -4.2273 -3.0571 19 6 10.2079 -5.4468 -3.3200 20 6 9.4476 -4.7903 -4.4742 21 6 7.6097 -5.8527 -1.9439 22 6 7.7087 -6.9404 -3.0154 23 6 6.3382 -6.4163 -2.5817 24 6 4.0605 -2.6328 -0.0256 25 1 -0.4850 0.8401 0.0004 26 1 3.6555 -1.0215 2.0943 27 1 3.5416 -0.6941 -2.0525 28 1 4.2247 0.5799 -0.9876 29 1 6.2119 -0.7020 -0.5312 30 1 5.9134 -1.1163 -2.2472 31 1 7.4782 -2.4378 -2.3987 32 1 9.8189 -3.2804 -2.8459 33 1 11.2876 -5.3021 -3.2817 34 1 9.8503 -6.4141 -2.9671 35 1 8.5898 -5.3259 -4.8808 36 1 10.0272 -4.2139 -5.1952 37 1 7.8258 -6.1387 -0.9146 38 1 8.0715 -6.6453 -4.0000 39 1 7.9900 -7.9422 -2.6911 40 1 5.7181 -7.0733 -1.9720 41 1 5.8000 -5.7766 -3.2811 42 1 3.3218 -3.2787 -0.5000 43 1 4.3039 -3.0142 0.9661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:48 Heat of formation + Delta-G solvation = 6.847166 kcal Electronic energy + Delta-G solvation = -23761.605369 eV Core-core repulsion = 20388.746324 eV Total energy + Delta-G solvation = -3372.859045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04072 -38.90857 -37.35013 -35.67627 -34.45797 -32.43258 -32.27916 -30.19102 -28.41450 -25.94699 -23.95674 -22.95482 -22.40643 -22.26258 -22.24795 -19.98469 -19.38093 -18.15953 -17.51868 -16.81884 -16.04806 -15.33652 -15.05893 -14.99496 -14.73155 -14.63790 -14.28343 -13.46993 -13.34634 -13.26322 -12.84794 -12.77613 -12.29499 -12.14463 -11.89225 -11.68814 -11.45653 -11.34044 -11.18671 -11.14262 -11.09434 -10.69753 -10.60689 -10.33025 -10.30106 -10.11946 -9.96219 -9.05636 -8.99497 -8.97141 -8.74440 -8.48153 -8.02572 -6.22242 -4.34150 1.38356 3.28205 3.40585 3.45455 3.52393 3.59376 3.76195 3.90823 4.40947 4.41698 4.54634 4.65924 4.77054 4.95765 5.04243 5.07314 5.09377 5.18960 5.30227 5.36420 5.40512 5.46377 5.62497 5.66126 5.68544 5.77753 5.86814 5.90925 5.91165 6.05434 6.10105 6.22194 6.28593 6.35199 6.44092 6.47803 6.61261 6.67783 6.77044 7.15203 7.47302 8.03897 8.18763 8.63350 8.72988 8.88810 9.40821 10.88191 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030556 B = 0.003788 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.143442 B = 7390.847447 C = 7817.154401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.088 3.912 3 Si 0.872 3.128 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.222 1.222 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.216 3.784 10 O -0.572 6.572 11 C -0.127 4.127 12 C 0.102 3.898 13 N -0.607 5.607 14 C 0.552 3.448 15 O -0.539 6.539 16 C -0.201 4.201 17 C 0.012 3.988 18 C -0.127 4.127 19 C -0.174 4.174 20 C -0.172 4.172 21 C -0.100 4.100 22 C -0.205 4.205 23 C -0.128 4.128 24 C 0.098 3.902 25 H 0.267 0.733 26 H 0.364 0.636 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.761 -7.328 -7.032 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.117 4.117 3 Si 0.700 3.300 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.145 1.145 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.176 3.824 10 O -0.379 6.379 11 C -0.165 4.165 12 C -0.021 4.021 13 N -0.340 5.340 14 C 0.343 3.657 15 O -0.419 6.419 16 C -0.222 4.222 17 C 0.010 3.990 18 C -0.145 4.145 19 C -0.211 4.211 20 C -0.208 4.208 21 C -0.118 4.118 22 C -0.242 4.242 23 C -0.165 4.165 24 C -0.024 4.024 25 H 0.076 0.924 26 H 0.211 0.789 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.752 -7.466 -7.265 21.452 hybrid contribution -0.072 0.799 0.341 0.872 sum 18.681 -6.667 -6.923 21.008 Atomic orbital electron populations 1.69939 1.06700 1.27573 1.48142 1.24953 0.94580 0.99709 0.92449 0.87109 0.82728 0.82204 0.77982 1.21283 1.22523 1.14489 1.21212 0.88315 0.95168 1.54108 0.90403 1.19965 0.93527 0.86089 0.82816 1.86522 1.78580 1.56853 1.15935 1.23176 0.93797 0.99751 0.99772 1.22412 0.98916 0.81606 0.99191 1.48465 1.26874 1.07031 1.51636 1.18073 0.82995 0.83531 0.81150 1.90770 1.72370 1.22676 1.56055 1.22429 0.96908 0.99630 1.03240 1.20987 0.92090 0.93510 0.92400 1.21178 0.95586 0.99075 0.98631 1.23194 0.97838 0.97723 1.02297 1.23107 1.03206 1.03854 0.90656 1.20754 1.03288 0.90161 0.97610 1.23475 1.02693 0.98391 0.99614 1.22679 0.89982 1.02106 1.01698 1.22751 0.85081 1.00542 0.94039 0.92378 0.78871 0.89427 0.90600 0.91587 0.91616 0.85707 0.86676 0.88655 0.87230 0.88205 0.88421 0.86711 0.88530 0.89052 0.88711 0.89667 0.90927 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 2 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 20.85 24.28 -169.99 -4.13 16.72 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.22 -5.11 4.98 56.52 0.28 -4.83 16 7 C -0.55 -14.65 8.81 -34.44 -0.30 -14.96 16 8 H 0.08 2.27 7.80 -52.49 -0.41 1.86 16 9 C 0.22 4.79 0.67 -89.94 -0.06 4.73 16 10 O -0.57 -12.31 10.29 -35.23 -0.36 -12.67 16 11 C -0.13 -2.55 4.90 -24.46 -0.12 -2.67 16 12 C 0.10 1.70 6.55 -2.41 -0.02 1.69 16 13 N -0.61 -11.25 3.32 -171.78 -0.57 -11.82 16 14 C 0.55 9.79 7.65 -12.67 -0.10 9.69 16 15 O -0.54 -10.61 12.70 5.26 0.07 -10.54 16 16 C -0.20 -2.82 9.08 -37.81 -0.34 -3.17 16 17 C 0.01 0.15 5.37 -101.17 -0.54 -0.39 16 18 C -0.13 -1.20 6.01 -91.77 -0.55 -1.76 16 19 C -0.17 -1.39 9.49 -26.73 -0.25 -1.64 16 20 C -0.17 -1.38 9.61 -26.73 -0.26 -1.63 16 21 C -0.10 -1.29 3.57 -91.77 -0.33 -1.62 16 22 C -0.21 -2.14 7.76 -26.73 -0.21 -2.34 16 23 C -0.13 -1.72 7.83 -26.73 -0.21 -1.93 16 24 C 0.10 2.04 6.21 -3.07 -0.02 2.02 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.36 6.87 9.09 45.56 0.41 7.29 16 27 H 0.09 1.79 8.04 -51.93 -0.42 1.37 16 28 H 0.08 1.53 4.90 -51.93 -0.25 1.28 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 31 H 0.13 1.51 6.84 -52.49 -0.36 1.15 16 32 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.91 5.36 -51.93 -0.28 0.63 16 35 H 0.10 0.84 6.07 -51.93 -0.32 0.53 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.59 8.11 -51.93 -0.42 1.17 16 38 H 0.10 0.91 4.72 -51.93 -0.25 0.66 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.62 7.65 -51.93 -0.40 1.22 16 43 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -30.84 331.76 -8.31 -39.15 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.69 Total: 11.28 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.41 Total: -11.64 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.20 Total: -37.29 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.30 Total: -23.22 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.13 Total: 16.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.84 -8.31 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.000 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds