Wall clock time and date at job start Tue Mar 31 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47472 * 273.27204 * 3 2 1 5 5 H 1.48502 * 109.47043 * 33.27245 * 3 2 1 6 6 H 1.48502 * 109.47037 * 153.27054 * 3 2 1 7 7 C 1.37877 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 3.62209 * 7 2 1 9 9 C 1.50699 * 120.00352 * 183.61961 * 7 2 1 10 10 O 1.42899 * 110.77613 * 60.38859 * 9 7 2 11 11 C 1.55158 * 110.72132 * 297.15738 * 9 7 2 12 12 C 1.55133 * 101.48533 * 205.96591 * 11 9 7 13 13 N 1.47424 * 104.71954 * 37.29176 * 12 11 9 14 14 C 1.34776 * 125.64296 * 155.81632 * 13 12 11 15 15 O 1.21614 * 119.99950 * 179.68833 * 14 13 12 16 16 C 1.47099 * 120.00507 * 359.69628 * 14 13 12 17 17 C 1.32990 * 120.00367 * 177.52335 * 16 14 13 18 18 C 1.50702 * 120.00066 * 186.59698 * 17 16 14 19 19 C 1.53003 * 117.49755 * 177.41743 * 18 17 16 20 20 C 1.52999 * 60.00003 * 107.48840 * 19 18 17 21 21 C 1.50696 * 119.99969 * 6.60425 * 17 16 14 22 22 C 1.53003 * 117.50305 * 132.26984 * 21 17 16 23 23 C 1.53000 * 117.50387 * 63.64306 * 21 17 16 24 24 C 1.47021 * 108.70579 * 335.55387 * 13 12 11 25 25 H 0.97007 * 119.99548 * 359.97438 * 1 2 3 26 26 H 0.96709 * 114.00042 * 61.78981 * 10 9 7 27 27 H 1.09006 * 111.00084 * 324.20281 * 11 9 7 28 28 H 1.09002 * 111.00561 * 88.01659 * 11 9 7 29 29 H 1.09002 * 110.49144 * 278.45089 * 12 11 9 30 30 H 1.08998 * 110.33878 * 156.06022 * 12 11 9 31 31 H 1.08002 * 119.99544 * 357.52350 * 16 14 13 32 32 H 1.08998 * 115.56307 * 31.72273 * 18 17 16 33 33 H 1.09003 * 117.49280 * 214.98092 * 19 18 17 34 34 H 1.08999 * 117.49990 * 359.97438 * 19 18 17 35 35 H 1.08995 * 117.49590 * 252.50738 * 20 19 18 36 36 H 1.09003 * 117.49485 * 107.48865 * 20 19 18 37 37 H 1.09000 * 115.54535 * 277.97211 * 21 17 16 38 38 H 1.08999 * 117.49364 * 359.97438 * 22 21 17 39 39 H 1.08996 * 117.49882 * 145.02117 * 22 21 17 40 40 H 1.08995 * 117.49945 * 214.98200 * 23 21 17 41 41 H 1.08997 * 117.49540 * 0.02562 * 23 21 17 42 42 H 1.08996 * 109.87995 * 120.70402 * 24 13 12 43 43 H 1.09003 * 109.87997 * 241.71298 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4275 2.0864 -1.3977 5 1 1.4830 2.6317 0.7681 6 1 3.5796 1.4211 0.6297 7 6 2.0045 -1.1941 -0.0005 8 1 1.4661 -2.1284 -0.0600 9 6 3.5092 -1.1955 0.0819 10 8 3.9513 -0.5734 1.2899 11 6 4.1274 -0.4927 -1.1556 12 6 5.5207 -1.1706 -1.2318 13 7 5.2760 -2.5735 -0.8506 14 6 6.0429 -3.6265 -1.1963 15 8 5.7473 -4.7441 -0.8186 16 6 7.2377 -3.4242 -2.0302 17 6 8.0217 -4.4556 -2.3303 18 6 9.3220 -4.2273 -3.0571 19 6 10.2079 -5.4468 -3.3200 20 6 9.4476 -4.7903 -4.4742 21 6 7.6097 -5.8527 -1.9439 22 6 7.7087 -6.9404 -3.0154 23 6 6.3382 -6.4163 -2.5817 24 6 4.0605 -2.6328 -0.0256 25 1 -0.4850 0.8401 0.0004 26 1 3.6555 -1.0215 2.0943 27 1 3.5416 -0.6941 -2.0525 28 1 4.2247 0.5799 -0.9876 29 1 6.2119 -0.7020 -0.5312 30 1 5.9134 -1.1163 -2.2472 31 1 7.4782 -2.4378 -2.3987 32 1 9.8189 -3.2804 -2.8459 33 1 11.2876 -5.3021 -3.2817 34 1 9.8503 -6.4141 -2.9671 35 1 8.5898 -5.3259 -4.8808 36 1 10.0272 -4.2139 -5.1952 37 1 7.8258 -6.1387 -0.9146 38 1 8.0715 -6.6453 -4.0000 39 1 7.9900 -7.9422 -2.6911 40 1 5.7181 -7.0733 -1.9720 41 1 5.8000 -5.7766 -3.2811 42 1 3.3218 -3.2787 -0.5000 43 1 4.3039 -3.0142 0.9661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:47 Heat of formation + Delta-G solvation = -13.901516 kcal Electronic energy + Delta-G solvation = -23762.505099 eV Core-core repulsion = 20388.746324 eV Total energy + Delta-G solvation = -3373.758776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30986 -40.10442 -38.75242 -36.59010 -36.02876 -34.51981 -33.34674 -31.79374 -30.03460 -27.63929 -25.31646 -24.03675 -23.54397 -23.20779 -22.96687 -21.62485 -20.72814 -19.49076 -19.13907 -18.16077 -17.29082 -16.75771 -16.51982 -16.44344 -16.16551 -15.87264 -15.16966 -14.99312 -14.82701 -14.75536 -14.44506 -14.05839 -13.76728 -13.58173 -13.18421 -13.12191 -12.83676 -12.56295 -12.42163 -12.30987 -12.20402 -12.17663 -11.96696 -11.75904 -11.43727 -11.22544 -11.03013 -10.94922 -10.80833 -10.39070 -10.20339 -10.00285 -9.46333 -8.37339 -6.53563 0.32212 1.38267 1.46362 1.69494 2.09657 2.29851 2.40006 2.92515 2.98469 3.03461 3.43378 3.58161 3.62046 3.80318 3.97732 3.99238 4.09681 4.11577 4.17080 4.20071 4.27481 4.41758 4.42625 4.52027 4.63253 4.64508 4.78312 4.91413 4.95013 4.98338 5.05637 5.09095 5.12066 5.18495 5.22793 5.26671 5.36981 5.38586 5.44340 5.51343 5.58783 6.05040 6.56934 6.66069 7.09798 7.25279 7.28650 8.77160 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030556 B = 0.003788 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.143442 B = 7390.847447 C = 7817.154401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.035 3.965 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.306 1.306 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.032 0.968 9 C 0.218 3.782 10 O -0.570 6.570 11 C -0.130 4.130 12 C 0.110 3.890 13 N -0.614 5.614 14 C 0.544 3.456 15 O -0.570 6.570 16 C -0.222 4.222 17 C 0.032 3.968 18 C -0.142 4.142 19 C -0.167 4.167 20 C -0.162 4.162 21 C -0.114 4.114 22 C -0.168 4.168 23 C -0.151 4.151 24 C 0.107 3.893 25 H 0.268 0.732 26 H 0.375 0.625 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.983 -6.406 -8.578 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.165 4.165 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.234 1.234 6 H -0.125 1.125 7 C -0.591 4.591 8 H 0.050 0.950 9 C 0.178 3.822 10 O -0.378 6.378 11 C -0.168 4.168 12 C -0.012 4.012 13 N -0.346 5.346 14 C 0.338 3.662 15 O -0.452 6.452 16 C -0.243 4.243 17 C 0.030 3.970 18 C -0.160 4.160 19 C -0.203 4.203 20 C -0.198 4.198 21 C -0.132 4.132 22 C -0.204 4.204 23 C -0.188 4.188 24 C -0.016 4.016 25 H 0.077 0.923 26 H 0.223 0.777 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.002 -6.558 -8.819 25.493 hybrid contribution -1.431 0.307 0.852 1.693 sum 21.572 -6.251 -7.967 23.830 Atomic orbital electron populations 1.70079 1.08675 1.28569 1.50368 1.25825 0.95182 1.03495 0.92027 0.86100 0.81841 0.77156 0.78631 1.19815 1.23410 1.12490 1.21449 0.91067 0.93371 1.53254 0.95003 1.19782 0.90828 0.87527 0.84112 1.86461 1.78205 1.56975 1.16143 1.23123 0.95686 1.00159 0.97824 1.22486 0.96948 0.79846 1.01876 1.48521 1.26136 1.08339 1.51647 1.18812 0.83663 0.82766 0.81000 1.90759 1.73323 1.23818 1.57265 1.22360 0.95888 1.01482 1.04551 1.21311 0.92649 0.92536 0.90486 1.21256 0.94385 1.00688 0.99710 1.23286 0.98724 0.96711 1.01610 1.23192 1.03097 1.03364 0.90193 1.20790 1.02975 0.91702 0.97776 1.23533 0.98999 0.98381 0.99473 1.22558 0.91075 1.02922 1.02295 1.22383 0.85881 0.99162 0.94222 0.92277 0.77678 0.90359 0.89947 0.89977 0.87900 0.83141 0.85116 0.86776 0.87671 0.88710 0.86459 0.88131 0.86771 0.87349 0.90485 0.91130 0.93936 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 2 C 0.03 1.96 5.47 84.66 0.46 2.43 16 3 Si 0.94 42.87 24.28 68.60 1.67 44.54 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.20 -8.59 4.98 99.48 0.50 -8.09 16 7 C -0.55 -30.62 8.81 25.60 0.23 -30.40 16 8 H 0.03 1.99 7.80 -2.91 -0.02 1.97 16 9 C 0.22 9.67 0.67 -10.35 -0.01 9.67 16 10 O -0.57 -23.74 10.29 -148.98 -1.53 -25.27 16 11 C -0.13 -4.98 4.90 32.07 0.16 -4.83 16 12 C 0.11 3.37 6.55 86.93 0.57 3.94 16 13 N -0.61 -22.29 3.32 -815.63 -2.71 -25.01 16 14 C 0.54 19.10 7.65 86.57 0.66 19.76 16 15 O -0.57 -23.11 12.70 -4.08 -0.05 -23.16 16 16 C -0.22 -5.75 9.08 23.43 0.21 -5.54 16 17 C 0.03 0.73 5.37 -17.62 -0.09 0.63 16 18 C -0.14 -2.16 6.01 -11.54 -0.07 -2.23 16 19 C -0.17 -1.97 9.49 30.59 0.29 -1.68 16 20 C -0.16 -1.91 9.61 30.59 0.29 -1.62 16 21 C -0.11 -2.84 3.57 -11.54 -0.04 -2.88 16 22 C -0.17 -3.16 7.76 30.60 0.24 -2.92 16 23 C -0.15 -4.13 7.83 30.60 0.24 -3.89 16 24 C 0.11 4.57 6.21 86.73 0.54 5.10 16 25 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 26 H 0.37 13.89 9.09 -74.05 -0.67 13.22 16 27 H 0.08 3.12 8.04 -2.38 -0.02 3.10 16 28 H 0.08 3.06 4.90 -2.39 -0.01 3.04 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.10 2.42 7.11 -2.39 -0.02 2.40 16 31 H 0.15 3.04 6.84 -2.91 -0.02 3.02 16 32 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.35 5.36 -2.39 -0.01 1.34 16 35 H 0.09 1.24 6.07 -2.39 -0.01 1.22 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 2.79 8.11 -2.39 -0.02 2.77 16 38 H 0.11 1.78 4.72 -2.39 -0.01 1.76 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.04 2.03 7.65 -2.39 -0.02 2.01 16 43 H 0.05 2.29 8.06 -2.39 -0.02 2.27 16 Total: -1.00 -70.22 331.76 1.49 -68.73 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.14 Total: 31.87 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.68 Total: -14.46 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.41 Total: -82.25 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.58 Total: -48.43 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.67 Total: 44.54 kcal Total: -70.22 1.49 -68.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.826 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds