Wall clock time and date at job start Tue Mar 31 2020 07:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46902 * 110.99940 * 2 1 4 4 C 1.40167 * 111.00714 * 123.95735 * 2 1 3 5 5 C 1.38784 * 120.00002 * 300.02561 * 4 2 1 6 6 C 1.38146 * 120.01902 * 179.71911 * 5 4 2 7 7 C 1.38860 * 120.03393 * 0.50682 * 6 5 4 8 8 N 1.39995 * 119.98746 * 179.76604 * 7 6 5 9 9 C 1.46500 * 120.00294 * 359.72330 * 8 7 6 10 10 C 1.52996 * 109.46949 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00252 * 10 9 8 12 12 C 1.47204 * 109.47042 * 65.00020 * 10 9 8 13 13 N 8.76470 * 124.17662 * 116.42141 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99976 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38852 * 120.01399 * 359.49062 * 7 6 5 24 24 C 1.38258 * 119.97591 * 0.25546 * 23 7 6 25 25 F 1.35102 * 120.01812 * 180.02562 * 24 23 7 26 26 H 1.09005 * 109.46949 * 296.04246 * 1 2 3 27 27 H 1.08997 * 109.47280 * 56.04631 * 1 2 3 28 28 H 1.09009 * 109.47145 * 176.04594 * 1 2 3 29 29 H 1.09004 * 109.47273 * 183.95549 * 3 2 1 30 30 H 1.09001 * 109.47216 * 303.95055 * 3 2 1 31 31 H 1.08993 * 109.47403 * 63.95768 * 3 2 1 32 32 H 1.07994 * 119.99279 * 359.97338 * 5 4 2 33 33 H 1.07999 * 119.97954 * 180.27295 * 6 5 4 34 34 H 0.97002 * 119.99101 * 179.72460 * 8 7 6 35 35 H 1.08997 * 109.46786 * 59.99904 * 9 8 7 36 36 H 1.08996 * 109.47381 * 300.00102 * 9 8 7 37 37 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 38 38 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.01188 * 180.23371 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9714 -0.7309 1.0853 5 6 1.6587 -0.3500 2.3828 6 6 2.1490 -1.0736 3.4526 7 6 2.9636 -2.1761 3.2311 8 7 3.4638 -2.9057 4.3162 9 6 3.1330 -2.5024 5.6851 10 6 3.8006 -3.4597 6.6743 11 1 3.5104 -4.4841 6.4409 12 6 5.2633 -3.3289 6.5725 13 7 6.3924 -3.2265 6.4937 14 6 3.3556 -3.1152 8.0970 15 6 3.9146 -4.1322 9.0584 16 1 4.5266 -4.9429 8.6914 17 6 3.6501 -4.0241 10.4073 18 7 2.9052 -3.0366 10.8541 19 14 4.3494 -5.2802 11.5998 20 1 5.6792 -4.8229 12.0771 21 1 3.4317 -5.4277 12.7579 22 1 4.4934 -6.5887 10.9126 23 6 3.2773 -2.5585 1.9337 24 6 2.7826 -1.8379 0.8624 25 9 3.0869 -2.2094 -0.4003 26 1 -0.3633 0.4512 0.9234 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 1.0286 0.5097 2.5560 33 1 1.9016 -0.7792 4.4619 34 1 4.0296 -3.6783 4.1614 35 1 2.0521 -2.5345 5.8221 36 1 3.4916 -1.4884 5.8619 37 1 2.2668 -3.1256 8.1496 38 1 3.7227 -2.1239 8.3625 39 1 2.7188 -2.9607 11.8031 40 1 3.9077 -3.4183 1.7614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871932741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:37 Heat of formation + Delta-G solvation = 7.820390 kcal Electronic energy + Delta-G solvation = -21960.868001 eV Core-core repulsion = 18496.883604 eV Total energy + Delta-G solvation = -3463.984397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.74368 -39.87903 -37.97524 -36.63076 -34.67848 -33.52069 -31.75209 -30.64644 -28.76222 -27.78248 -26.64165 -24.28951 -23.96150 -22.32443 -21.92126 -20.88521 -18.03799 -17.31040 -16.75993 -16.68163 -16.28872 -15.74233 -15.56362 -14.87749 -14.76774 -14.51945 -14.44136 -14.14431 -14.01763 -13.26756 -13.16337 -12.95994 -12.72507 -12.64766 -12.46082 -12.19333 -11.92770 -11.87387 -11.83450 -11.50820 -11.35478 -11.18683 -10.88693 -10.66765 -10.46354 -9.92876 -9.76310 -9.38627 -8.84560 -8.70900 -8.56012 -7.46852 -6.20360 -4.24458 1.17896 1.29829 3.23025 3.24647 3.30251 3.33701 3.41123 3.48422 3.58054 3.69449 4.31877 4.37710 4.56605 4.68750 4.92375 5.08024 5.10240 5.13898 5.17559 5.18225 5.27603 5.37729 5.47848 5.48996 5.63224 5.65418 5.66601 5.84302 5.95487 6.12300 6.15558 6.26750 6.27423 6.54748 6.67855 7.08489 7.26738 7.29820 7.35631 7.62472 7.73615 8.08925 8.23436 8.79477 9.41896 10.90369 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.002780 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.965828 B =10071.320690 C =10562.177840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.501 5.501 3 C 0.029 3.971 4 C -0.023 4.023 5 C -0.069 4.069 6 C -0.198 4.198 7 C 0.253 3.747 8 N -0.741 5.741 9 C 0.128 3.872 10 C -0.002 4.002 11 H 0.109 0.891 12 C 0.236 3.764 13 N -0.464 5.464 14 C 0.034 3.966 15 C -0.531 4.531 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.236 4.236 24 C 0.172 3.828 25 F -0.131 7.131 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.401 0.599 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 5.864 -18.870 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.221 5.221 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.090 4.090 6 C -0.221 4.221 7 C 0.146 3.854 8 N -0.368 5.368 9 C 0.004 3.996 10 C -0.024 4.024 11 H 0.127 0.873 12 C -0.081 4.081 13 N -0.141 5.141 14 C -0.004 4.004 15 C -0.569 4.569 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.260 4.260 24 C 0.151 3.849 25 F -0.109 7.109 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.236 0.764 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.963 5.929 -19.107 20.612 hybrid contribution -0.023 -0.662 1.377 1.528 sum -4.986 5.266 -17.730 19.156 Atomic orbital electron populations 1.22448 0.86205 1.02585 1.00582 1.59529 1.08222 1.13863 1.40519 1.22447 1.01037 0.87749 1.00572 1.18429 1.05278 0.98483 0.89740 1.21155 0.97697 0.98492 0.91646 1.20642 1.03850 0.97804 0.99797 1.17548 0.90759 0.90299 0.86753 1.45063 1.55371 1.32784 1.03566 1.21613 1.00504 0.98533 0.78973 1.19480 0.81412 1.01144 1.00397 0.87316 1.29123 0.95152 0.92447 0.91412 1.81081 1.12994 1.09445 1.10555 1.19157 0.97952 0.98160 0.85169 1.21092 1.32534 1.11355 0.91904 0.92468 1.24947 0.94855 0.95642 0.98424 1.69928 1.37331 1.30706 1.14794 0.86570 0.78986 0.81731 0.80672 1.20607 1.20996 1.19725 1.20402 1.09958 1.05274 0.90353 1.17123 0.95804 0.93299 0.78676 1.91477 1.91199 1.90666 1.37604 0.95111 0.91189 0.91215 0.91281 0.91175 0.95135 0.85665 0.84994 0.76357 0.89826 0.91327 0.93937 0.95299 0.92644 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.35 60.06 0.56 0.81 16 2 N -0.50 -5.33 4.83 -186.70 -0.90 -6.23 16 3 C 0.03 0.25 9.39 60.07 0.56 0.82 16 4 C -0.02 -0.26 4.75 -83.55 -0.40 -0.66 16 5 C -0.07 -0.74 8.57 -39.41 -0.34 -1.07 16 6 C -0.20 -2.22 9.31 -39.38 -0.37 -2.59 16 7 C 0.25 3.02 6.66 -83.67 -0.56 2.46 16 8 N -0.74 -8.80 5.53 -58.58 -0.32 -9.12 16 9 C 0.13 1.65 4.28 -4.04 -0.02 1.63 16 10 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 11 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 12 C 0.24 4.42 13.45 -20.74 -0.28 4.14 16 13 N -0.46 -9.66 18.54 42.17 0.78 -8.88 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -13.40 8.60 -34.44 -0.30 -13.70 16 16 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 19 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.24 -2.81 9.87 -39.35 -0.39 -3.20 16 24 C 0.17 2.18 7.31 -39.28 -0.29 1.89 16 25 F -0.13 -1.78 17.07 2.25 0.04 -1.75 16 26 H 0.03 0.24 7.13 -51.93 -0.37 -0.13 16 27 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.03 0.24 7.35 -51.93 -0.38 -0.14 16 32 H 0.13 1.11 7.02 -52.49 -0.37 0.75 16 33 H 0.13 1.36 6.73 -52.49 -0.35 1.01 16 34 H 0.40 4.52 8.23 -40.82 -0.34 4.19 16 35 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -29.36 347.03 -7.24 -36.60 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.55 Total: -0.17 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.23 Total: -7.52 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.29 Total: -48.00 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.36 -7.24 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871932741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.424 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds