Wall clock time and date at job start Tue Mar 31 2020 07:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46902 * 110.99940 * 2 1 4 4 C 1.40167 * 111.00714 * 123.95735 * 2 1 3 5 5 C 1.38784 * 120.00002 * 300.02561 * 4 2 1 6 6 C 1.38146 * 120.01902 * 179.71911 * 5 4 2 7 7 C 1.38860 * 120.03393 * 0.50682 * 6 5 4 8 8 N 1.39995 * 119.98746 * 179.76604 * 7 6 5 9 9 C 1.46500 * 120.00294 * 359.72330 * 8 7 6 10 10 C 1.52996 * 109.46949 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00252 * 10 9 8 12 12 C 1.47204 * 109.47042 * 65.00020 * 10 9 8 13 13 N 8.76470 * 124.17662 * 116.42141 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99976 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38852 * 120.01399 * 359.49062 * 7 6 5 24 24 C 1.38258 * 119.97591 * 0.25546 * 23 7 6 25 25 F 1.35102 * 120.01812 * 180.02562 * 24 23 7 26 26 H 1.09005 * 109.46949 * 296.04246 * 1 2 3 27 27 H 1.08997 * 109.47280 * 56.04631 * 1 2 3 28 28 H 1.09009 * 109.47145 * 176.04594 * 1 2 3 29 29 H 1.09004 * 109.47273 * 183.95549 * 3 2 1 30 30 H 1.09001 * 109.47216 * 303.95055 * 3 2 1 31 31 H 1.08993 * 109.47403 * 63.95768 * 3 2 1 32 32 H 1.07994 * 119.99279 * 359.97338 * 5 4 2 33 33 H 1.07999 * 119.97954 * 180.27295 * 6 5 4 34 34 H 0.97002 * 119.99101 * 179.72460 * 8 7 6 35 35 H 1.08997 * 109.46786 * 59.99904 * 9 8 7 36 36 H 1.08996 * 109.47381 * 300.00102 * 9 8 7 37 37 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 38 38 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.01188 * 180.23371 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9714 -0.7309 1.0853 5 6 1.6587 -0.3500 2.3828 6 6 2.1490 -1.0736 3.4526 7 6 2.9636 -2.1761 3.2311 8 7 3.4638 -2.9057 4.3162 9 6 3.1330 -2.5024 5.6851 10 6 3.8006 -3.4597 6.6743 11 1 3.5104 -4.4841 6.4409 12 6 5.2633 -3.3289 6.5725 13 7 6.3924 -3.2265 6.4937 14 6 3.3556 -3.1152 8.0970 15 6 3.9146 -4.1322 9.0584 16 1 4.5266 -4.9429 8.6914 17 6 3.6501 -4.0241 10.4073 18 7 2.9052 -3.0366 10.8541 19 14 4.3494 -5.2802 11.5998 20 1 5.6792 -4.8229 12.0771 21 1 3.4317 -5.4277 12.7579 22 1 4.4934 -6.5887 10.9126 23 6 3.2773 -2.5585 1.9337 24 6 2.7826 -1.8379 0.8624 25 9 3.0869 -2.2094 -0.4003 26 1 -0.3633 0.4512 0.9234 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 1.0286 0.5097 2.5560 33 1 1.9016 -0.7792 4.4619 34 1 4.0296 -3.6783 4.1614 35 1 2.0521 -2.5345 5.8221 36 1 3.4916 -1.4884 5.8619 37 1 2.2668 -3.1256 8.1496 38 1 3.7227 -2.1239 8.3625 39 1 2.7188 -2.9607 11.8031 40 1 3.9077 -3.4183 1.7614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871932741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:32 Heat of formation + Delta-G solvation = -8.893127 kcal Electronic energy + Delta-G solvation = -21961.592753 eV Core-core repulsion = 18496.883604 eV Total energy + Delta-G solvation = -3464.709149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -49.72683 -40.74861 -39.05849 -37.80604 -35.98553 -35.12387 -33.25496 -31.55086 -29.87456 -28.43546 -28.06314 -25.44639 -24.90569 -23.74961 -23.11011 -21.77137 -19.01924 -18.68532 -18.29724 -17.69806 -17.35121 -16.67626 -16.65574 -16.44425 -15.77042 -15.55258 -15.25225 -15.17938 -14.96840 -14.73635 -14.51064 -14.18889 -13.84710 -13.80481 -13.49764 -13.35799 -13.20568 -13.03522 -12.81300 -12.70744 -12.57212 -12.48931 -12.42324 -12.20117 -12.01173 -11.49848 -11.22273 -10.83038 -10.55714 -9.74942 -9.44169 -8.37293 -8.20480 -6.28001 0.28934 0.41371 1.39801 1.43085 1.50875 1.89930 1.92737 2.32117 2.43598 2.69835 2.95371 3.13372 3.18751 3.48207 3.84413 3.95856 4.20757 4.26722 4.30581 4.38614 4.46306 4.48559 4.66734 4.67381 4.74855 4.80137 4.86718 4.93993 5.00076 5.02575 5.10512 5.28920 5.41482 5.46753 5.60368 5.66778 5.78273 6.00210 6.13657 6.22735 6.45295 6.68079 6.74995 6.86987 7.40770 8.90198 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.002780 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.965828 B =10071.320690 C =10562.177840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.520 5.520 3 C 0.029 3.971 4 C -0.022 4.022 5 C -0.067 4.067 6 C -0.199 4.199 7 C 0.244 3.756 8 N -0.740 5.740 9 C 0.141 3.859 10 C 0.011 3.989 11 H 0.131 0.869 12 C 0.249 3.751 13 N -0.502 5.502 14 C 0.039 3.961 15 C -0.540 4.540 16 H 0.055 0.945 17 C 0.014 3.986 18 N -0.921 5.921 19 Si 0.944 3.056 20 H -0.286 1.286 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.237 4.237 24 C 0.149 3.851 25 F -0.142 7.142 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.404 0.596 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 5.977 -19.448 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.241 5.241 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.087 4.087 6 C -0.222 4.222 7 C 0.138 3.862 8 N -0.368 5.368 9 C 0.016 3.984 10 C -0.011 4.011 11 H 0.148 0.852 12 C -0.067 4.067 13 N -0.179 5.179 14 C 0.000 4.000 15 C -0.578 4.578 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.771 3.229 20 H -0.212 1.212 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.261 4.261 24 C 0.128 3.872 25 F -0.120 7.120 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.240 0.760 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.867 6.035 -19.706 21.429 hybrid contribution 0.242 -0.662 1.503 1.660 sum -5.625 5.374 -18.204 19.796 Atomic orbital electron populations 1.22488 0.84947 1.02551 1.01796 1.59556 1.09468 1.14776 1.40294 1.22478 1.00479 0.87033 1.01770 1.18613 1.04616 0.98107 0.90582 1.21338 0.97565 0.98863 0.90980 1.20854 1.03342 0.97436 1.00553 1.17593 0.91296 0.90735 0.86551 1.44899 1.55777 1.33077 1.03047 1.21433 1.01090 0.97264 0.78651 1.19399 0.79924 1.03265 0.98507 0.85183 1.29583 0.95571 0.91246 0.90336 1.81089 1.14237 1.10883 1.11700 1.18973 0.97699 0.95929 0.87389 1.21545 1.31744 1.11776 0.92723 0.92684 1.25657 0.95477 0.97232 1.00217 1.70012 1.38803 1.32214 1.15031 0.85754 0.77975 0.80131 0.79077 1.21202 1.20518 1.18886 1.20484 1.09871 1.05423 0.90326 1.17393 0.97023 0.94340 0.78466 1.91443 1.91452 1.90882 1.38270 0.94161 0.89623 0.91973 0.92307 0.89536 0.94278 0.83709 0.83903 0.76020 0.87907 0.91497 0.93808 0.97565 0.92702 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.35 127.69 1.19 1.63 16 2 N -0.52 -10.29 4.83 -744.58 -3.59 -13.88 16 3 C 0.03 0.45 9.39 127.69 1.20 1.65 16 4 C -0.02 -0.50 4.75 38.13 0.18 -0.31 16 5 C -0.07 -1.28 8.57 22.38 0.19 -1.09 16 6 C -0.20 -4.04 9.31 22.40 0.21 -3.83 16 7 C 0.24 5.41 6.66 38.13 0.25 5.66 16 8 N -0.74 -16.13 5.53 -339.24 -1.88 -18.01 16 9 C 0.14 3.31 4.28 86.38 0.37 3.68 16 10 C 0.01 0.33 2.26 -12.60 -0.03 0.30 16 11 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 12 C 0.25 9.07 13.45 89.44 1.20 10.27 16 13 N -0.50 -20.60 18.54 20.01 0.37 -20.23 16 14 C 0.04 1.62 4.42 29.85 0.13 1.75 16 15 C -0.54 -26.84 8.60 25.60 0.22 -26.62 16 16 H 0.05 2.71 7.59 -2.91 -0.02 2.68 16 17 C 0.01 0.71 5.46 84.66 0.46 1.17 16 18 N -0.92 -50.71 13.29 21.45 0.28 -50.42 16 19 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 23 C -0.24 -5.44 9.87 22.42 0.22 -5.22 16 24 C 0.15 3.68 7.31 22.47 0.16 3.84 16 25 F -0.14 -3.85 17.07 44.97 0.77 -3.09 16 26 H 0.04 0.52 7.13 -2.38 -0.02 0.51 16 27 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 1.04 8.12 -2.39 -0.02 1.03 16 31 H 0.04 0.54 7.35 -2.39 -0.02 0.52 16 32 H 0.15 2.16 7.02 -2.91 -0.02 2.14 16 33 H 0.14 2.56 6.73 -2.91 -0.02 2.54 16 34 H 0.40 8.38 8.23 -92.71 -0.76 7.62 16 35 H 0.10 2.08 7.94 -2.39 -0.02 2.07 16 36 H 0.07 1.63 7.96 -2.39 -0.02 1.61 16 37 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -61.93 347.03 4.24 -57.68 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.29 Total: 11.13 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.97 Total: -7.11 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -4.82 Total: -102.54 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.09 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -61.93 4.24 -57.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871932741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.790 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds