Wall clock time and date at job start Tue Mar 31 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00117 * 2 1 4 4 C 1.40173 * 111.00116 * 123.95797 * 2 1 3 5 5 C 1.38780 * 120.00213 * 300.27239 * 4 2 1 6 6 C 1.38142 * 120.01897 * 180.25800 * 5 4 2 7 7 C 1.38858 * 120.03616 * 359.48763 * 6 5 4 8 8 N 1.39991 * 119.99429 * 180.25888 * 7 6 5 9 9 C 1.46499 * 119.99781 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47077 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46622 * 54.99948 * 10 9 8 12 12 C 1.47195 * 109.47105 * 295.00195 * 10 9 8 13 13 N 8.76411 * 122.79283 * 113.91438 * 2 1 3 14 14 C 1.52999 * 109.47303 * 174.99827 * 10 9 8 15 15 C 1.50696 * 109.47144 * 185.00034 * 14 10 9 16 16 H 1.07996 * 119.99933 * 0.02562 * 15 14 10 17 17 C 1.37877 * 119.99893 * 180.02562 * 15 14 10 18 18 N 1.31510 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47068 * 59.99556 * 19 17 15 21 21 H 1.48502 * 109.47240 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46784 * 299.99817 * 19 17 15 23 23 C 1.38853 * 120.01184 * 0.23617 * 7 6 5 24 24 C 1.38261 * 119.97734 * 0.02562 * 23 7 6 25 25 F 1.35105 * 120.01946 * 179.97438 * 24 23 7 26 26 H 1.09007 * 109.46788 * 296.04171 * 1 2 3 27 27 H 1.09001 * 109.47016 * 56.04146 * 1 2 3 28 28 H 1.08995 * 109.47148 * 176.04734 * 1 2 3 29 29 H 1.09001 * 109.46979 * 183.95677 * 3 2 1 30 30 H 1.08997 * 109.46973 * 303.95670 * 3 2 1 31 31 H 1.09000 * 109.46761 * 63.95666 * 3 2 1 32 32 H 1.07998 * 119.99083 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.98476 * 179.77177 * 6 5 4 34 34 H 0.97000 * 119.99734 * 359.97438 * 8 7 6 35 35 H 1.08995 * 109.47325 * 299.99658 * 9 8 7 36 36 H 1.08999 * 109.47218 * 59.99673 * 9 8 7 37 37 H 1.08999 * 109.47160 * 305.00094 * 14 10 9 38 38 H 1.08996 * 109.46574 * 65.00024 * 14 10 9 39 39 H 0.97002 * 119.99987 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.01406 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9714 -0.7310 1.0854 5 6 1.6545 -0.3532 2.3827 6 6 2.1537 -1.0701 3.4528 7 6 2.9643 -2.1756 3.2312 8 7 3.4653 -2.9047 4.3162 9 6 4.3209 -4.0707 4.0826 10 6 4.7290 -4.6810 5.4250 11 1 3.8361 -4.9069 6.0078 12 6 5.5682 -3.7239 6.1641 13 7 6.2157 -2.9865 6.7349 14 6 5.5181 -5.9689 5.1809 15 6 5.8142 -6.6343 6.5002 16 1 5.4732 -6.1838 7.4207 17 6 6.5203 -7.8180 6.5322 18 7 6.9350 -8.3668 5.4113 19 14 6.8866 -8.6432 8.1675 20 1 5.6110 -8.9677 8.8550 21 1 7.6526 -9.8932 7.9306 22 1 7.6870 -7.7250 9.0168 23 6 3.2776 -2.5583 1.9337 24 6 2.7826 -1.8379 0.8625 25 9 3.0874 -2.2091 -0.4003 26 1 -0.3633 0.4512 0.9234 27 1 -0.3633 0.5741 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.0204 0.5038 2.5557 33 1 1.9097 -0.7735 4.4622 34 1 3.2465 -2.6375 5.2226 35 1 3.7748 -4.8108 3.4977 36 1 5.2132 -3.7632 3.5373 37 1 4.9300 -6.6428 4.5580 38 1 6.4542 -5.7311 4.6757 39 1 7.4321 -9.1994 5.4338 40 1 3.9083 -3.4178 1.7614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871932742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:44 Heat of formation + Delta-G solvation = 8.327249 kcal Electronic energy + Delta-G solvation = -21997.384370 eV Core-core repulsion = 18533.421952 eV Total energy + Delta-G solvation = -3463.962418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.69365 -39.87473 -37.98889 -36.63412 -34.69184 -33.51245 -31.71909 -30.63538 -28.76890 -27.79511 -26.69278 -24.51367 -23.52327 -22.43982 -21.89047 -20.96923 -18.06004 -17.26587 -16.73882 -16.67955 -16.26561 -15.71683 -15.40733 -14.91282 -14.75908 -14.60144 -14.46770 -14.19736 -13.92273 -13.31756 -13.13326 -12.92415 -12.70125 -12.65826 -12.45038 -12.18335 -11.96680 -11.93364 -11.84085 -11.46652 -11.34045 -11.17263 -10.86071 -10.67378 -10.45066 -9.89625 -9.74365 -9.38272 -8.85619 -8.71581 -8.54066 -7.46401 -6.18267 -4.22726 1.18302 1.29767 3.25144 3.26684 3.30378 3.34186 3.42220 3.49884 3.57819 3.69064 4.32312 4.36339 4.57921 4.67836 4.91555 5.04753 5.07865 5.14573 5.18996 5.20018 5.26399 5.31852 5.49042 5.55872 5.63630 5.64486 5.73594 5.87883 5.95328 6.03985 6.16420 6.23934 6.29055 6.56754 6.67450 7.07648 7.28978 7.30757 7.37844 7.62964 7.75086 8.10672 8.24015 8.80959 9.43476 10.92399 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.002809 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.105078 B = 9965.216092 C =10426.513097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.500 5.500 3 C 0.029 3.971 4 C -0.023 4.023 5 C -0.071 4.071 6 C -0.201 4.201 7 C 0.253 3.747 8 N -0.740 5.740 9 C 0.126 3.874 10 C -0.002 4.002 11 H 0.109 0.891 12 C 0.237 3.763 13 N -0.465 5.465 14 C 0.034 3.966 15 C -0.532 4.532 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.277 1.277 23 C -0.233 4.233 24 C 0.175 3.825 25 F -0.129 7.129 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.402 0.598 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.029 0.971 39 H 0.265 0.735 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 14.997 -9.534 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.221 5.221 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.092 4.092 6 C -0.224 4.224 7 C 0.146 3.854 8 N -0.367 5.367 9 C 0.001 3.999 10 C -0.024 4.024 11 H 0.127 0.873 12 C -0.081 4.081 13 N -0.141 5.141 14 C -0.004 4.004 15 C -0.570 4.570 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.257 4.257 24 C 0.154 3.846 25 F -0.107 7.107 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.237 0.763 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.237 15.536 -9.284 21.847 hybrid contribution -0.217 -0.436 1.613 1.685 sum -12.454 15.100 -7.671 21.023 Atomic orbital electron populations 1.22446 0.86258 1.02614 1.00468 1.59524 1.08170 1.13829 1.40540 1.22445 1.01105 0.87750 1.00458 1.18424 1.05335 0.98579 0.89675 1.21076 0.97855 0.98539 0.91690 1.20492 1.04437 0.98129 0.99342 1.17548 0.90583 0.89864 0.87357 1.45052 1.54364 1.31100 1.06204 1.21636 0.94110 0.86909 0.97210 1.19476 0.97333 0.93428 0.92174 0.87341 1.29070 0.93515 0.92376 0.93093 1.81022 1.10215 1.12811 1.10079 1.19155 0.95215 0.87614 0.98466 1.21044 1.36355 1.07274 0.92312 0.92540 1.24945 0.95321 0.97060 0.96516 1.69916 1.37303 1.19370 1.26115 0.86633 0.78617 0.78812 0.83904 1.20007 1.21092 1.20232 1.20550 1.09604 1.05349 0.90233 1.17180 0.95503 0.93072 0.78857 1.91490 1.91117 1.90620 1.37489 0.95269 0.91183 0.91168 0.91223 0.91171 0.95287 0.85842 0.85711 0.76271 0.89775 0.91289 0.93917 0.95273 0.92568 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.35 60.07 0.56 0.81 16 2 N -0.50 -5.33 4.83 -186.69 -0.90 -6.23 16 3 C 0.03 0.25 9.39 60.07 0.56 0.82 16 4 C -0.02 -0.27 4.75 -83.55 -0.40 -0.67 16 5 C -0.07 -0.73 8.57 -39.42 -0.34 -1.06 16 6 C -0.20 -2.13 9.89 -39.39 -0.39 -2.52 16 7 C 0.25 3.02 6.66 -83.67 -0.56 2.46 16 8 N -0.74 -8.79 5.53 -58.58 -0.32 -9.11 16 9 C 0.13 1.67 4.28 -4.04 -0.02 1.66 16 10 C 0.00 -0.03 2.26 -93.41 -0.21 -0.25 16 11 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 12 C 0.24 4.45 13.45 -20.79 -0.28 4.17 16 13 N -0.46 -9.68 18.53 42.12 0.78 -8.90 16 14 C 0.03 0.74 4.42 -27.89 -0.12 0.61 16 15 C -0.53 -13.53 8.60 -34.44 -0.30 -13.82 16 16 H 0.06 1.42 7.59 -52.49 -0.40 1.02 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.23 -2.94 9.29 -39.35 -0.37 -3.30 16 24 C 0.17 2.29 7.31 -39.28 -0.29 2.00 16 25 F -0.13 -1.83 17.07 2.25 0.04 -1.79 16 26 H 0.03 0.22 7.11 -51.93 -0.37 -0.15 16 27 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.03 0.22 7.36 -51.93 -0.38 -0.16 16 32 H 0.12 1.03 7.02 -52.49 -0.37 0.66 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.40 4.41 8.23 -40.82 -0.34 4.07 16 35 H 0.08 1.03 7.95 -51.93 -0.41 0.62 16 36 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.14 1.71 6.73 -52.49 -0.35 1.36 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -29.57 347.03 -7.24 -36.81 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.55 Total: -0.23 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.23 Total: -7.47 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.29 Total: -48.24 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.57 -7.24 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871932742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.134 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds