Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00117 * 2 1 4 4 C 1.40173 * 111.00116 * 123.95797 * 2 1 3 5 5 C 1.38780 * 120.00213 * 300.27239 * 4 2 1 6 6 C 1.38142 * 120.01897 * 180.25800 * 5 4 2 7 7 C 1.38858 * 120.03616 * 359.48763 * 6 5 4 8 8 N 1.39991 * 119.99429 * 180.25888 * 7 6 5 9 9 C 1.46499 * 119.99781 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47077 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46622 * 54.99948 * 10 9 8 12 12 C 1.47195 * 109.47105 * 295.00195 * 10 9 8 13 13 N 8.76411 * 122.79283 * 113.91438 * 2 1 3 14 14 C 1.52999 * 109.47303 * 174.99827 * 10 9 8 15 15 C 1.50696 * 109.47144 * 185.00034 * 14 10 9 16 16 H 1.07996 * 119.99933 * 0.02562 * 15 14 10 17 17 C 1.37877 * 119.99893 * 180.02562 * 15 14 10 18 18 N 1.31510 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47068 * 59.99556 * 19 17 15 21 21 H 1.48502 * 109.47240 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46784 * 299.99817 * 19 17 15 23 23 C 1.38853 * 120.01184 * 0.23617 * 7 6 5 24 24 C 1.38261 * 119.97734 * 0.02562 * 23 7 6 25 25 F 1.35105 * 120.01946 * 179.97438 * 24 23 7 26 26 H 1.09007 * 109.46788 * 296.04171 * 1 2 3 27 27 H 1.09001 * 109.47016 * 56.04146 * 1 2 3 28 28 H 1.08995 * 109.47148 * 176.04734 * 1 2 3 29 29 H 1.09001 * 109.46979 * 183.95677 * 3 2 1 30 30 H 1.08997 * 109.46973 * 303.95670 * 3 2 1 31 31 H 1.09000 * 109.46761 * 63.95666 * 3 2 1 32 32 H 1.07998 * 119.99083 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.98476 * 179.77177 * 6 5 4 34 34 H 0.97000 * 119.99734 * 359.97438 * 8 7 6 35 35 H 1.08995 * 109.47325 * 299.99658 * 9 8 7 36 36 H 1.08999 * 109.47218 * 59.99673 * 9 8 7 37 37 H 1.08999 * 109.47160 * 305.00094 * 14 10 9 38 38 H 1.08996 * 109.46574 * 65.00024 * 14 10 9 39 39 H 0.97002 * 119.99987 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.01406 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9714 -0.7310 1.0854 5 6 1.6545 -0.3532 2.3827 6 6 2.1537 -1.0701 3.4528 7 6 2.9643 -2.1756 3.2312 8 7 3.4653 -2.9047 4.3162 9 6 4.3209 -4.0707 4.0826 10 6 4.7290 -4.6810 5.4250 11 1 3.8361 -4.9069 6.0078 12 6 5.5682 -3.7239 6.1641 13 7 6.2157 -2.9865 6.7349 14 6 5.5181 -5.9689 5.1809 15 6 5.8142 -6.6343 6.5002 16 1 5.4732 -6.1838 7.4207 17 6 6.5203 -7.8180 6.5322 18 7 6.9350 -8.3668 5.4113 19 14 6.8866 -8.6432 8.1675 20 1 5.6110 -8.9677 8.8550 21 1 7.6526 -9.8932 7.9306 22 1 7.6870 -7.7250 9.0168 23 6 3.2776 -2.5583 1.9337 24 6 2.7826 -1.8379 0.8625 25 9 3.0874 -2.2091 -0.4003 26 1 -0.3633 0.4512 0.9234 27 1 -0.3633 0.5741 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.0204 0.5038 2.5557 33 1 1.9097 -0.7735 4.4622 34 1 3.2465 -2.6375 5.2226 35 1 3.7748 -4.8108 3.4977 36 1 5.2132 -3.7632 3.5373 37 1 4.9300 -6.6428 4.5580 38 1 6.4542 -5.7311 4.6757 39 1 7.4321 -9.1994 5.4338 40 1 3.9083 -3.4178 1.7614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871932742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -8.708339 kcal Electronic energy + Delta-G solvation = -21998.123089 eV Core-core repulsion = 18533.421952 eV Total energy + Delta-G solvation = -3464.701136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.70947 -40.74464 -39.08636 -37.81804 -36.00377 -35.13354 -33.25688 -31.52146 -29.90261 -28.43608 -28.10237 -25.71534 -24.43345 -23.86092 -23.16826 -21.84494 -19.08035 -18.65979 -18.29792 -17.64714 -17.36705 -16.67523 -16.64154 -16.25519 -15.95086 -15.55111 -15.30922 -15.22279 -14.93994 -14.77129 -14.43189 -14.20976 -13.86323 -13.75202 -13.55010 -13.36785 -13.20258 -13.02702 -12.79906 -12.72916 -12.57607 -12.53173 -12.44061 -12.18846 -12.02347 -11.49766 -11.24410 -10.81540 -10.55735 -9.76715 -9.43411 -8.37375 -8.20467 -6.28900 0.29137 0.41483 1.41400 1.42942 1.49587 1.89868 1.92321 2.33507 2.43924 2.69691 2.95316 3.12559 3.18146 3.43983 3.85127 3.94486 4.20187 4.25843 4.28594 4.37641 4.45652 4.51905 4.65839 4.66602 4.77380 4.80841 4.86035 4.96187 4.99392 5.02251 5.09393 5.22544 5.39797 5.45394 5.58442 5.67297 5.77353 6.01147 6.12049 6.20698 6.45813 6.68857 6.76444 6.86267 7.40059 8.90150 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.002809 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.105078 B = 9965.216092 C =10426.513097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.521 5.521 3 C 0.030 3.970 4 C -0.022 4.022 5 C -0.067 4.067 6 C -0.193 4.193 7 C 0.243 3.757 8 N -0.737 5.737 9 C 0.138 3.862 10 C 0.013 3.987 11 H 0.133 0.867 12 C 0.250 3.750 13 N -0.499 5.499 14 C 0.038 3.962 15 C -0.540 4.540 16 H 0.057 0.943 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.281 1.281 23 C -0.242 4.242 24 C 0.148 3.852 25 F -0.143 7.143 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.409 0.591 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 16.251 -8.809 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.243 5.243 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.088 4.088 6 C -0.216 4.216 7 C 0.137 3.863 8 N -0.366 5.366 9 C 0.013 3.987 10 C -0.009 4.009 11 H 0.151 0.849 12 C -0.067 4.067 13 N -0.177 5.177 14 C -0.001 4.001 15 C -0.579 4.579 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.773 3.227 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.207 1.207 23 C -0.266 4.266 24 C 0.127 3.873 25 F -0.121 7.121 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.245 0.755 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.032 16.810 -8.555 23.508 hybrid contribution 0.305 -0.764 1.338 1.571 sum -13.726 16.045 -7.217 22.315 Atomic orbital electron populations 1.22484 0.84892 1.02517 1.01829 1.59528 1.09513 1.14817 1.40426 1.22473 1.00438 0.86974 1.01798 1.18613 1.04516 0.98008 0.90737 1.21312 0.97656 0.98978 0.90832 1.20765 1.03177 0.97114 1.00557 1.17618 0.91256 0.90515 0.86865 1.44838 1.54363 1.30790 1.06589 1.21399 0.94427 0.87785 0.95097 1.19361 0.96833 0.90782 0.93941 0.84902 1.29464 0.92936 0.91967 0.92299 1.81030 1.11102 1.14076 1.11446 1.18973 0.94794 0.89790 0.96548 1.21507 1.35369 1.07156 0.93819 0.92457 1.25700 0.95678 0.98093 0.99264 1.70018 1.38503 1.19867 1.27835 0.85766 0.78742 0.77728 0.80446 1.18686 1.20980 1.20697 1.20598 1.09829 1.05463 0.90711 1.17477 0.97002 0.94351 0.78478 1.91445 1.91447 1.90908 1.38342 0.93990 0.89667 0.92073 0.92416 0.89576 0.94118 0.83424 0.83559 0.75519 0.88458 0.92034 0.94091 0.97799 0.92697 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.35 127.69 1.19 1.62 16 2 N -0.52 -10.32 4.83 -744.57 -3.59 -13.91 16 3 C 0.03 0.46 9.39 127.69 1.20 1.66 16 4 C -0.02 -0.49 4.75 38.13 0.18 -0.30 16 5 C -0.07 -1.20 8.57 22.38 0.19 -1.01 16 6 C -0.19 -3.58 9.89 22.40 0.22 -3.36 16 7 C 0.24 5.40 6.66 38.13 0.25 5.66 16 8 N -0.74 -16.11 5.53 -339.23 -1.88 -17.99 16 9 C 0.14 3.50 4.28 86.38 0.37 3.86 16 10 C 0.01 0.40 2.26 -12.60 -0.03 0.37 16 11 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 12 C 0.25 9.14 13.45 89.45 1.20 10.35 16 13 N -0.50 -20.44 18.53 20.00 0.37 -20.07 16 14 C 0.04 1.62 4.42 29.85 0.13 1.76 16 15 C -0.54 -27.23 8.60 25.60 0.22 -27.00 16 16 H 0.06 2.82 7.59 -2.91 -0.02 2.80 16 17 C 0.01 0.63 5.46 84.66 0.46 1.10 16 18 N -0.92 -51.79 13.29 21.45 0.28 -51.50 16 19 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.24 -5.99 9.29 22.42 0.21 -5.78 16 24 C 0.15 3.84 7.31 22.47 0.16 4.00 16 25 F -0.14 -4.15 17.07 44.97 0.77 -3.38 16 26 H 0.04 0.50 7.11 -2.38 -0.02 0.48 16 27 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.04 0.52 7.36 -2.39 -0.02 0.50 16 32 H 0.15 1.91 7.02 -2.91 -0.02 1.89 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.41 7.94 8.23 -92.71 -0.76 7.18 16 35 H 0.10 2.24 7.95 -2.39 -0.02 2.23 16 36 H 0.06 1.66 7.95 -2.39 -0.02 1.65 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.14 3.37 6.73 -2.91 -0.02 3.35 16 Total: -1.00 -63.09 347.03 4.24 -58.85 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.29 Total: 10.85 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.97 Total: -7.09 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.82 Total: -103.47 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.77 Total: -3.38 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -63.09 4.24 -58.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871932742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.138 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds