Wall clock time and date at job start Tue Mar 31 2020 08:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47255 * 299.99952 * 3 2 1 6 6 H 1.48501 * 109.47175 * 59.99604 * 3 2 1 7 7 C 1.37878 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47231 * 185.05270 * 9 7 2 11 11 C 1.46906 * 110.99887 * 199.60459 * 10 9 7 12 12 C 1.50697 * 109.47552 * 72.02838 * 11 10 9 13 13 C 1.34513 * 125.78488 * 89.71331 * 12 11 10 14 14 C 1.41382 * 106.84007 * 179.88959 * 13 12 11 15 15 C 1.34518 * 106.84122 * 0.37451 * 14 13 12 16 16 O 1.34302 * 125.79040 * 270.02602 * 12 11 10 17 17 C 1.46895 * 111.00097 * 75.64579 * 10 9 7 18 18 C 1.53002 * 109.46913 * 190.00400 * 17 10 9 19 19 H 1.09003 * 115.60045 * 330.86586 * 18 17 10 20 20 C 1.53252 * 117.53487 * 116.74373 * 18 17 10 21 21 C 1.51764 * 59.68233 * 107.39326 * 20 18 17 22 22 C 1.53675 * 122.36778 * 111.74117 * 21 20 18 23 23 C 1.54373 * 103.79911 * 163.03672 * 22 21 20 24 24 O 1.43827 * 107.43822 * 2.67209 * 23 22 21 25 25 C 1.44816 * 107.12193 * 334.04853 * 24 23 22 26 26 H 0.96997 * 120.00145 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47364 * 65.05160 * 9 7 2 28 28 H 1.09004 * 109.47466 * 305.05381 * 9 7 2 29 29 H 1.08998 * 109.46884 * 192.03528 * 11 10 9 30 30 H 1.09003 * 109.46670 * 312.02602 * 11 10 9 31 31 H 1.07998 * 126.58411 * 0.03179 * 13 12 11 32 32 H 1.07999 * 126.58353 * 180.12728 * 14 13 12 33 33 H 1.07998 * 125.79228 * 179.79192 * 15 14 13 34 34 H 1.08993 * 109.47043 * 70.00269 * 17 10 9 35 35 H 1.08997 * 109.47265 * 310.00137 * 17 10 9 36 36 H 1.08998 * 117.52735 * 359.97438 * 20 18 17 37 37 H 1.09000 * 117.58225 * 214.77289 * 20 18 17 38 38 H 1.08996 * 110.56033 * 44.45970 * 22 21 20 39 39 H 1.08999 * 110.68540 * 281.67286 * 22 21 20 40 40 H 1.09004 * 109.87464 * 122.17584 * 23 22 21 41 41 H 1.09000 * 109.87467 * 243.16037 * 23 22 21 42 42 H 1.08996 * 110.53120 * 279.98825 * 25 24 23 43 43 H 1.08993 * 110.80972 * 157.04164 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2009 -3.6130 0.1231 11 6 1.5961 -4.8729 -0.3294 12 6 1.4580 -4.8535 -1.8299 13 6 2.3812 -5.2803 -2.7103 14 6 1.8390 -5.0816 -4.0009 15 6 0.6203 -4.5377 -3.8321 16 8 0.3949 -4.4018 -2.5151 17 6 2.6975 -3.7322 1.5004 18 6 3.8585 -4.7280 1.5395 19 1 3.8297 -5.5149 0.7858 20 6 5.2341 -4.1963 1.9563 21 6 4.4363 -5.0790 2.8985 22 6 4.8776 -6.5057 3.2608 23 6 4.0573 -6.8346 4.5265 24 8 3.1972 -5.7116 4.7866 25 6 3.8325 -4.5453 4.2092 26 1 -0.4850 0.8400 -0.0004 27 1 0.6943 -2.5973 -0.9314 28 1 0.5579 -2.5186 0.8415 29 1 2.2314 -5.7078 -0.0337 30 1 0.6117 -4.9870 0.1246 31 1 3.3496 -5.6970 -2.4763 32 1 2.3139 -5.3173 -4.9418 33 1 -0.0614 -4.2581 -4.6217 34 1 1.8942 -4.0852 2.1470 35 1 3.0423 -2.7584 1.8479 36 1 5.3116 -3.1373 2.2021 37 1 6.1104 -4.6332 1.4774 38 1 5.9452 -6.5324 3.4789 39 1 4.6349 -7.1998 2.4563 40 1 3.4579 -7.7292 4.3575 41 1 4.7273 -6.9920 5.3718 42 1 4.6156 -4.1708 4.8685 43 1 3.0986 -3.7659 4.0049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886029915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:44 Heat of formation + Delta-G solvation = 3.602202 kcal Electronic energy + Delta-G solvation = -23616.805552 eV Core-core repulsion = 20243.805795 eV Total energy + Delta-G solvation = -3372.999757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01176 -39.92420 -37.23223 -35.47136 -32.69555 -32.36590 -30.70433 -29.96099 -27.82995 -27.01538 -26.02253 -23.94099 -22.63918 -21.49519 -21.13383 -20.49721 -19.63235 -18.96414 -16.87315 -16.55128 -16.15868 -15.80241 -15.62497 -15.17499 -14.82614 -14.62533 -14.27973 -13.82654 -13.75492 -13.12903 -12.76922 -12.50123 -12.37031 -12.31455 -12.21375 -11.85010 -11.80744 -11.58330 -11.36697 -11.26692 -10.99566 -10.80601 -10.61656 -10.46049 -9.97509 -9.79470 -9.66484 -9.43049 -9.40771 -9.19671 -8.40699 -7.97341 -7.32801 -5.99731 -4.01026 2.25439 3.09380 3.31542 3.39163 3.43803 3.53867 3.68994 4.05844 4.41845 4.44497 4.68010 4.89377 4.92324 5.03433 5.14247 5.25196 5.35330 5.44300 5.48208 5.52729 5.53399 5.63503 5.67727 5.73364 5.79920 5.83485 5.89363 5.92893 5.99723 6.04727 6.22148 6.24107 6.30242 6.38714 6.59184 6.68061 6.84672 6.98319 7.22056 7.32206 7.68800 7.82355 8.09029 8.14488 8.50854 9.07185 9.62752 11.10773 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.005860 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.541066 B = 4776.667526 C = 6833.873900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.189 3.811 10 N -0.527 5.527 11 C 0.126 3.874 12 C 0.023 3.977 13 C -0.210 4.210 14 C -0.219 4.219 15 C -0.048 4.048 16 O -0.169 6.169 17 C 0.093 3.907 18 C -0.113 4.113 19 H 0.106 0.894 20 C -0.150 4.150 21 C -0.172 4.172 22 C -0.117 4.117 23 C 0.050 3.950 24 O -0.377 6.377 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.034 0.966 28 H -0.002 1.002 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.195 0.805 34 H 0.031 0.969 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -13.527 2.149 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.064 3.936 10 N -0.252 5.252 11 C -0.002 4.002 12 C -0.028 4.028 13 C -0.229 4.229 14 C -0.238 4.238 15 C -0.116 4.116 16 O -0.064 6.064 17 C -0.034 4.034 18 C -0.132 4.132 19 H 0.124 0.876 20 C -0.187 4.187 21 C -0.173 4.173 22 C -0.155 4.155 23 C -0.027 4.027 24 O -0.296 6.296 25 C 0.005 3.995 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.212 0.788 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.656 -13.183 2.115 15.391 hybrid contribution 0.164 0.771 0.023 0.789 sum 7.820 -12.412 2.138 14.825 Atomic orbital electron populations 1.69974 1.06027 1.26570 1.51175 1.24983 0.94825 0.99215 0.95593 0.86487 0.80118 0.83621 0.77484 1.19660 1.21077 1.21136 1.21161 0.93549 0.89687 1.49683 0.91797 1.19849 0.89739 0.87227 0.96759 1.62124 1.39699 1.02640 1.20752 1.20530 0.98769 0.95225 0.85652 1.22352 0.86312 0.99414 0.94728 1.21373 1.00673 1.08961 0.91943 1.21699 0.96420 1.07148 0.98537 1.23880 0.99366 1.05013 0.83389 1.84093 1.39945 1.64404 1.17969 1.21562 0.93915 0.98320 0.89632 1.22384 0.95082 1.01051 0.94647 0.87639 1.22865 0.95269 0.99318 1.01206 1.22208 1.05909 0.96069 0.93093 1.22304 1.00125 0.94978 0.98077 1.23120 0.93103 0.90490 0.95995 1.88955 1.45243 1.16877 1.78476 1.22929 0.97086 0.88850 0.90637 0.93035 0.94782 0.98408 0.89060 0.94038 0.84130 0.84172 0.78847 0.95118 0.89297 0.88109 0.88867 0.90581 0.90559 0.90171 0.92726 0.91920 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.50 -14.09 8.55 -34.44 -0.29 -14.38 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 4.93 4.59 -4.98 -0.02 4.91 16 10 N -0.53 -11.09 4.37 -237.52 -1.04 -12.12 16 11 C 0.13 2.30 5.34 -4.97 -0.03 2.28 16 12 C 0.02 0.44 6.13 -35.63 -0.22 0.22 16 13 C -0.21 -3.55 10.81 -39.70 -0.43 -3.98 16 14 C -0.22 -3.41 10.91 -39.70 -0.43 -3.84 16 15 C -0.05 -0.78 12.09 29.42 0.36 -0.43 16 16 O -0.17 -3.37 9.79 5.69 0.06 -3.32 16 17 C 0.09 1.71 3.88 -3.83 -0.01 1.70 16 18 C -0.11 -1.65 5.49 -91.11 -0.50 -2.15 16 19 H 0.11 1.48 6.41 -51.93 -0.33 1.15 16 20 C -0.15 -1.93 9.99 -27.23 -0.27 -2.20 16 21 C -0.17 -2.16 2.40 -154.95 -0.37 -2.53 16 22 C -0.12 -1.20 6.85 -25.66 -0.18 -1.38 16 23 C 0.05 0.54 7.71 37.88 0.29 0.83 16 24 O -0.38 -5.38 11.54 -35.23 -0.41 -5.78 16 25 C 0.08 1.07 7.37 37.61 0.28 1.35 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.97 6.46 -51.93 -0.34 0.64 16 28 H 0.00 -0.05 8.00 -51.93 -0.42 -0.47 16 29 H 0.09 1.39 6.02 -51.93 -0.31 1.08 16 30 H 0.04 0.77 8.05 -51.93 -0.42 0.36 16 31 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.19 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 35 H 0.09 1.78 7.17 -51.93 -0.37 1.41 16 36 H 0.10 1.35 8.04 -51.93 -0.42 0.94 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.40 6.83 -51.93 -0.35 1.04 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -31.93 351.38 -9.03 -40.96 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.72 Total: 2.54 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.93 Total: -18.14 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.30 Total: -38.29 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.35 Total: -9.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.93 -9.03 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886029915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.558 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds