Wall clock time and date at job start Tue Mar 31 2020 08:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47255 * 299.99952 * 3 2 1 6 6 H 1.48501 * 109.47175 * 59.99604 * 3 2 1 7 7 C 1.37878 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47231 * 185.05270 * 9 7 2 11 11 C 1.46906 * 110.99887 * 199.60459 * 10 9 7 12 12 C 1.50697 * 109.47552 * 72.02838 * 11 10 9 13 13 C 1.34513 * 125.78488 * 89.71331 * 12 11 10 14 14 C 1.41382 * 106.84007 * 179.88959 * 13 12 11 15 15 C 1.34518 * 106.84122 * 0.37451 * 14 13 12 16 16 O 1.34302 * 125.79040 * 270.02602 * 12 11 10 17 17 C 1.46895 * 111.00097 * 75.64579 * 10 9 7 18 18 C 1.53002 * 109.46913 * 190.00400 * 17 10 9 19 19 H 1.09003 * 115.60045 * 330.86586 * 18 17 10 20 20 C 1.53252 * 117.53487 * 116.74373 * 18 17 10 21 21 C 1.51764 * 59.68233 * 107.39326 * 20 18 17 22 22 C 1.53675 * 122.36778 * 111.74117 * 21 20 18 23 23 C 1.54373 * 103.79911 * 163.03672 * 22 21 20 24 24 O 1.43827 * 107.43822 * 2.67209 * 23 22 21 25 25 C 1.44816 * 107.12193 * 334.04853 * 24 23 22 26 26 H 0.96997 * 120.00145 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47364 * 65.05160 * 9 7 2 28 28 H 1.09004 * 109.47466 * 305.05381 * 9 7 2 29 29 H 1.08998 * 109.46884 * 192.03528 * 11 10 9 30 30 H 1.09003 * 109.46670 * 312.02602 * 11 10 9 31 31 H 1.07998 * 126.58411 * 0.03179 * 13 12 11 32 32 H 1.07999 * 126.58353 * 180.12728 * 14 13 12 33 33 H 1.07998 * 125.79228 * 179.79192 * 15 14 13 34 34 H 1.08993 * 109.47043 * 70.00269 * 17 10 9 35 35 H 1.08997 * 109.47265 * 310.00137 * 17 10 9 36 36 H 1.08998 * 117.52735 * 359.97438 * 20 18 17 37 37 H 1.09000 * 117.58225 * 214.77289 * 20 18 17 38 38 H 1.08996 * 110.56033 * 44.45970 * 22 21 20 39 39 H 1.08999 * 110.68540 * 281.67286 * 22 21 20 40 40 H 1.09004 * 109.87464 * 122.17584 * 23 22 21 41 41 H 1.09000 * 109.87467 * 243.16037 * 23 22 21 42 42 H 1.08996 * 110.53120 * 279.98825 * 25 24 23 43 43 H 1.08993 * 110.80972 * 157.04164 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2009 -3.6130 0.1231 11 6 1.5961 -4.8729 -0.3294 12 6 1.4580 -4.8535 -1.8299 13 6 2.3812 -5.2803 -2.7103 14 6 1.8390 -5.0816 -4.0009 15 6 0.6203 -4.5377 -3.8321 16 8 0.3949 -4.4018 -2.5151 17 6 2.6975 -3.7322 1.5004 18 6 3.8585 -4.7280 1.5395 19 1 3.8297 -5.5149 0.7858 20 6 5.2341 -4.1963 1.9563 21 6 4.4363 -5.0790 2.8985 22 6 4.8776 -6.5057 3.2608 23 6 4.0573 -6.8346 4.5265 24 8 3.1972 -5.7116 4.7866 25 6 3.8325 -4.5453 4.2092 26 1 -0.4850 0.8400 -0.0004 27 1 0.6943 -2.5973 -0.9314 28 1 0.5579 -2.5186 0.8415 29 1 2.2314 -5.7078 -0.0337 30 1 0.6117 -4.9870 0.1246 31 1 3.3496 -5.6970 -2.4763 32 1 2.3139 -5.3173 -4.9418 33 1 -0.0614 -4.2581 -4.6217 34 1 1.8942 -4.0852 2.1470 35 1 3.0423 -2.7584 1.8479 36 1 5.3116 -3.1373 2.2021 37 1 6.1104 -4.6332 1.4774 38 1 5.9452 -6.5324 3.4789 39 1 4.6349 -7.1998 2.4563 40 1 3.4579 -7.7292 4.3575 41 1 4.7273 -6.9920 5.3718 42 1 4.6156 -4.1708 4.8685 43 1 3.0986 -3.7659 4.0049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886029915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:43 Heat of formation + Delta-G solvation = -16.643068 kcal Electronic energy + Delta-G solvation = -23617.683453 eV Core-core repulsion = 20243.805795 eV Total energy + Delta-G solvation = -3373.877658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.36284 -40.96408 -38.67731 -36.76333 -34.74314 -33.79839 -31.80229 -31.25688 -29.51783 -28.30482 -27.38304 -25.75124 -23.53183 -23.12867 -22.49174 -21.74786 -20.99220 -20.09198 -18.59920 -18.18365 -17.40293 -17.09285 -16.75069 -16.62748 -16.19398 -16.04183 -15.75311 -15.30286 -15.14075 -14.35153 -14.21572 -13.91910 -13.65807 -13.63340 -13.58121 -13.36797 -13.13306 -12.99499 -12.78655 -12.67189 -12.51590 -12.38681 -12.13167 -11.94204 -11.74032 -11.29833 -10.94299 -10.72203 -10.65647 -10.58952 -10.49950 -9.33330 -9.07667 -8.19691 -6.30167 0.90160 1.38681 1.39370 1.53076 1.81981 2.26723 2.39332 2.65574 3.02392 3.12342 3.35905 3.46793 3.84031 3.87555 3.91761 4.00107 4.17206 4.23739 4.25670 4.41103 4.44011 4.45215 4.56179 4.58394 4.70529 4.73995 4.82422 4.86402 4.90120 4.98739 4.99448 5.10052 5.12530 5.16387 5.19935 5.24909 5.30341 5.35622 5.64984 5.76197 5.92156 6.05096 6.27489 6.39336 6.51213 6.85807 7.39112 8.91179 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.005860 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.541066 B = 4776.667526 C = 6833.873900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.528 5.528 11 C 0.130 3.870 12 C -0.018 4.018 13 C -0.202 4.202 14 C -0.219 4.219 15 C -0.059 4.059 16 O -0.206 6.206 17 C 0.101 3.899 18 C -0.129 4.129 19 H 0.117 0.883 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.110 4.110 23 C 0.042 3.958 24 O -0.405 6.405 25 C 0.076 3.924 26 H 0.263 0.737 27 H 0.004 0.996 28 H -0.038 1.038 29 H 0.126 0.874 30 H 0.026 0.974 31 H 0.164 0.836 32 H 0.175 0.825 33 H 0.227 0.773 34 H 0.017 0.983 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 -14.622 1.514 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.253 5.253 11 C 0.002 3.998 12 C -0.068 4.068 13 C -0.221 4.221 14 C -0.237 4.237 15 C -0.126 4.126 16 O -0.103 6.103 17 C -0.026 4.026 18 C -0.147 4.147 19 H 0.135 0.865 20 C -0.177 4.177 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.035 4.035 24 O -0.325 6.325 25 C 0.000 4.000 26 H 0.072 0.928 27 H 0.022 0.978 28 H -0.021 1.021 29 H 0.144 0.856 30 H 0.044 0.956 31 H 0.182 0.818 32 H 0.193 0.807 33 H 0.243 0.757 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.540 -14.307 1.486 17.832 hybrid contribution -0.774 1.054 0.205 1.324 sum 9.765 -13.253 1.691 16.549 Atomic orbital electron populations 1.70112 1.07811 1.27708 1.52065 1.25918 0.95683 1.03176 0.94950 0.85365 0.79120 0.78658 0.77696 1.18478 1.20565 1.20325 1.21430 0.93532 0.90789 1.49534 0.91925 1.19416 0.89698 0.89073 0.93656 1.62054 1.38111 1.02725 1.22371 1.20609 0.98517 0.94677 0.85985 1.22549 0.87294 1.01832 0.95094 1.21768 1.00874 1.07342 0.92151 1.22132 0.96006 1.06238 0.99372 1.24726 1.00687 1.04513 0.82701 1.84063 1.41052 1.65386 1.19796 1.21444 0.95020 0.98359 0.87791 1.22196 0.94580 1.00929 0.97002 0.86478 1.22927 0.94869 0.99132 1.00730 1.22229 1.04546 0.97681 0.91562 1.22348 1.01321 0.93050 0.97996 1.23376 0.93343 0.89622 0.97118 1.88927 1.46765 1.18009 1.78804 1.22955 0.96920 0.88481 0.91640 0.92804 0.97770 1.02056 0.85639 0.95604 0.81829 0.80749 0.75651 0.96526 0.91793 0.89117 0.86384 0.88239 0.89427 0.89220 0.90866 0.90165 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.51 -29.90 8.55 25.60 0.22 -29.68 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.52 4.59 85.56 0.39 11.91 16 10 N -0.53 -23.11 4.37 -905.37 -3.96 -27.07 16 11 C 0.13 4.87 5.34 85.55 0.46 5.32 16 12 C -0.02 -0.68 6.13 24.83 0.15 -0.52 16 13 C -0.20 -6.51 10.81 22.19 0.24 -6.27 16 14 C -0.22 -6.34 10.91 22.19 0.24 -6.10 16 15 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 16 O -0.21 -8.50 9.79 -2.54 -0.02 -8.52 16 17 C 0.10 3.87 3.88 86.30 0.33 4.21 16 18 C -0.13 -3.62 5.49 -11.11 -0.06 -3.68 16 19 H 0.12 3.02 6.41 -2.39 -0.02 3.01 16 20 C -0.14 -3.31 9.99 30.27 0.30 -3.01 16 21 C -0.16 -3.71 2.40 -52.47 -0.13 -3.84 16 22 C -0.11 -1.88 6.85 31.29 0.21 -1.66 16 23 C 0.04 0.79 7.71 72.45 0.56 1.35 16 24 O -0.41 -11.30 11.54 -148.98 -1.72 -13.02 16 25 C 0.08 1.99 7.37 72.27 0.53 2.52 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.00 0.26 6.46 -2.39 -0.02 0.24 16 28 H -0.04 -2.34 8.00 -2.39 -0.02 -2.36 16 29 H 0.13 3.73 6.02 -2.39 -0.01 3.72 16 30 H 0.03 1.03 8.05 -2.39 -0.02 1.01 16 31 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.23 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.02 0.67 7.86 -2.39 -0.02 0.65 16 35 H 0.06 2.71 7.17 -2.39 -0.02 2.70 16 36 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 37 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.26 6.83 -2.39 -0.02 2.24 16 Total: -1.00 -72.44 351.38 2.33 -70.12 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.99 Total: 19.13 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 4.73 Total: -30.05 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.67 Total: -84.88 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.74 Total: -21.55 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.44 2.33 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886029915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.474 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds