Wall clock time and date at job start Tue Mar 31 2020 08:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48497 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47199 * 299.99961 * 3 2 1 6 6 H 1.48502 * 109.46750 * 59.99753 * 3 2 1 7 7 C 1.37880 * 119.99432 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47406 * 175.32445 * 9 7 2 11 11 C 1.46894 * 111.00101 * 200.05325 * 10 9 7 12 12 C 1.50703 * 109.47440 * 66.04905 * 11 10 9 13 13 C 1.34506 * 125.79298 * 89.99866 * 12 11 10 14 14 C 1.41387 * 106.84041 * 180.02562 * 13 12 11 15 15 C 1.34513 * 106.83977 * 359.97438 * 14 13 12 16 16 O 1.34305 * 108.42057 * 359.74247 * 15 14 13 17 17 C 1.46902 * 110.99823 * 76.09511 * 10 9 7 18 18 C 1.53006 * 109.47093 * 200.09482 * 17 10 9 19 19 H 1.08999 * 115.56100 * 329.33827 * 18 17 10 20 20 C 1.53179 * 117.51954 * 115.18721 * 18 17 10 21 21 C 1.52100 * 117.52048 * 183.55765 * 18 17 10 22 22 C 1.53709 * 121.74951 * 3.66505 * 21 18 17 23 23 C 1.54698 * 103.69595 * 143.51763 * 22 21 18 24 24 O 1.44493 * 104.87154 * 23.82675 * 23 22 21 25 25 C 1.44639 * 105.46321 * 320.02871 * 24 23 22 26 26 H 0.97006 * 119.99598 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46858 * 55.32694 * 9 7 2 28 28 H 1.08998 * 109.47473 * 295.32383 * 9 7 2 29 29 H 1.09004 * 109.46913 * 186.04758 * 11 10 9 30 30 H 1.08993 * 109.47285 * 306.03965 * 11 10 9 31 31 H 1.08001 * 126.58119 * 0.02881 * 13 12 11 32 32 H 1.08006 * 126.57559 * 179.97438 * 14 13 12 33 33 H 1.07996 * 125.78586 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47183 * 320.09622 * 17 10 9 35 35 H 1.09000 * 109.46753 * 80.09631 * 17 10 9 36 36 H 1.08999 * 117.52570 * 214.84593 * 20 18 17 37 37 H 1.09001 * 117.52349 * 0.02562 * 20 18 17 38 38 H 1.09001 * 110.57775 * 262.06686 * 22 21 18 39 39 H 1.08995 * 110.58333 * 24.81059 * 22 21 18 40 40 H 1.08994 * 110.36339 * 142.67882 * 23 22 21 41 41 H 1.09002 * 110.35664 * 264.98121 * 23 22 21 42 42 H 1.08998 * 110.41638 * 280.88630 * 25 24 23 43 43 H 1.09000 * 110.41653 * 158.42721 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2014 -3.6135 -0.1140 11 6 1.5306 -4.8313 -0.5882 12 6 1.0518 -4.6232 -2.0019 13 6 1.7534 -4.8916 -3.1176 14 6 0.9283 -4.5477 -4.2130 15 6 -0.2284 -4.0903 -3.7011 16 8 -0.1502 -4.1439 -2.3614 17 6 2.8867 -3.8530 1.1631 18 6 4.1777 -4.6344 0.9104 19 1 4.1579 -5.3121 0.0570 20 6 5.5025 -3.9346 1.2292 21 6 4.9934 -5.0551 2.1233 22 6 4.5079 -4.7873 3.5569 23 6 4.9735 -6.0371 4.3407 24 8 6.0829 -6.5614 3.5777 25 6 5.6985 -6.4189 2.1906 26 1 -0.4850 0.8401 -0.0004 27 1 0.5627 -2.5212 -0.8454 28 1 0.6889 -2.5943 0.9285 29 1 2.2312 -5.6660 -0.5610 30 1 0.6789 -5.0510 0.0554 31 1 2.7549 -5.2928 -3.1673 32 1 1.1788 -4.6355 -5.2600 33 1 -1.0778 -3.7435 -4.2708 34 1 3.1255 -2.8985 1.6319 35 1 2.2365 -4.4288 1.8218 36 1 6.3546 -4.1518 0.5852 37 1 5.4540 -2.9179 1.6192 38 1 4.9750 -3.8877 3.9578 39 1 3.4220 -4.6982 3.5834 40 1 5.3007 -5.7568 5.3419 41 1 4.1700 -6.7716 4.3952 42 1 5.0133 -7.2160 1.9022 43 1 6.5799 -6.4233 1.5494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886029917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:56 Heat of formation + Delta-G solvation = 2.134417 kcal Electronic energy + Delta-G solvation = -23533.842765 eV Core-core repulsion = 20160.779360 eV Total energy + Delta-G solvation = -3373.063405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.16 seconds Orbital eigenvalues (eV) -42.01035 -39.88467 -37.28388 -35.49789 -32.69608 -32.36011 -30.35284 -30.11600 -28.04881 -26.98994 -25.82698 -23.90873 -22.79477 -21.51218 -21.12519 -20.52846 -19.61875 -18.81073 -16.86220 -16.52354 -16.17893 -15.95804 -15.58776 -15.16963 -14.79932 -14.64349 -14.17644 -13.96094 -13.77839 -13.08708 -12.65333 -12.48529 -12.39298 -12.31045 -12.21849 -11.93990 -11.83839 -11.42458 -11.31255 -11.26656 -11.10302 -10.85925 -10.67469 -10.43923 -9.96097 -9.87113 -9.60863 -9.43023 -9.40144 -9.21139 -8.42202 -7.97416 -7.35898 -6.01319 -4.02326 2.26083 3.10675 3.30463 3.38176 3.42893 3.54200 3.74732 4.04832 4.39107 4.45392 4.77013 4.87714 4.98528 5.10984 5.13853 5.22405 5.34632 5.43510 5.48841 5.50321 5.55381 5.64843 5.74013 5.74365 5.79109 5.81218 5.85856 5.96427 6.05804 6.09885 6.15695 6.25983 6.29942 6.39296 6.59505 6.66418 6.73487 6.99102 7.18277 7.27694 7.69260 7.79793 8.07379 8.13653 8.48561 9.05025 9.61165 11.09216 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.005475 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.256406 B = 5112.535612 C = 7093.983145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.527 5.527 11 C 0.130 3.870 12 C 0.019 3.981 13 C -0.207 4.207 14 C -0.219 4.219 15 C -0.045 4.045 16 O -0.169 6.169 17 C 0.094 3.906 18 C -0.112 4.112 19 H 0.105 0.895 20 C -0.149 4.149 21 C -0.172 4.172 22 C -0.121 4.121 23 C 0.048 3.952 24 O -0.379 6.379 25 C 0.084 3.916 26 H 0.260 0.740 27 H 0.042 0.958 28 H -0.011 1.011 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.195 0.805 34 H 0.088 0.912 35 H 0.028 0.972 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -12.534 1.021 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.064 3.936 10 N -0.252 5.252 11 C 0.002 3.998 12 C -0.032 4.032 13 C -0.227 4.227 14 C -0.239 4.239 15 C -0.114 4.114 16 O -0.064 6.064 17 C -0.034 4.034 18 C -0.131 4.131 19 H 0.123 0.877 20 C -0.186 4.186 21 C -0.173 4.173 22 C -0.158 4.158 23 C -0.029 4.029 24 O -0.297 6.297 25 C 0.007 3.993 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.007 0.993 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.211 0.789 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.930 -12.280 0.985 13.672 hybrid contribution -0.338 0.965 0.098 1.027 sum 5.592 -11.315 1.083 12.668 Atomic orbital electron populations 1.69982 1.06009 1.26542 1.51169 1.24977 0.94831 0.99206 0.95585 0.86490 0.80142 0.83620 0.77477 1.19649 1.21053 1.21163 1.21150 0.93500 0.89718 1.49624 0.91843 1.19867 0.90220 0.87199 0.96325 1.62137 1.31491 1.04032 1.27553 1.20519 0.96776 0.94902 0.87589 1.22258 0.83908 1.00126 0.96869 1.21379 1.01029 1.08922 0.91352 1.21701 0.95079 1.07234 0.99856 1.23873 1.01078 1.05587 0.80826 1.84094 1.34212 1.64617 1.23457 1.21558 0.91955 0.99306 0.90589 1.22310 0.93004 1.01378 0.96418 0.87703 1.23006 0.97731 0.96630 1.01256 1.22293 1.05111 0.96934 0.92942 1.22362 1.01951 0.98759 0.92746 1.23412 0.89318 0.94270 0.95880 1.89122 1.39795 1.83774 1.17051 1.22768 0.98796 0.94046 0.83644 0.93057 0.93960 0.99298 0.89195 0.94313 0.84084 0.84159 0.78851 0.89351 0.95439 0.88967 0.88283 0.90428 0.89979 0.89308 0.92401 0.92027 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.50 -13.97 8.54 -34.44 -0.29 -14.26 16 8 H 0.06 1.76 7.78 -52.49 -0.41 1.35 16 9 C 0.19 4.85 4.59 -4.98 -0.02 4.83 16 10 N -0.53 -10.86 4.34 -237.52 -1.03 -11.89 16 11 C 0.13 2.30 5.30 -4.98 -0.03 2.28 16 12 C 0.02 0.36 5.93 -35.63 -0.21 0.15 16 13 C -0.21 -3.53 10.81 -39.70 -0.43 -3.95 16 14 C -0.22 -3.47 10.91 -39.70 -0.43 -3.90 16 15 C -0.05 -0.75 12.09 29.42 0.36 -0.39 16 16 O -0.17 -3.38 9.61 5.70 0.05 -3.32 16 17 C 0.09 1.65 4.22 -3.82 -0.02 1.64 16 18 C -0.11 -1.61 5.57 -90.98 -0.51 -2.12 16 19 H 0.10 1.44 7.09 -51.93 -0.37 1.08 16 20 C -0.15 -2.05 9.94 -27.09 -0.27 -2.32 16 21 C -0.17 -2.18 2.50 -154.69 -0.39 -2.56 16 22 C -0.12 -1.44 6.50 -25.47 -0.17 -1.61 16 23 C 0.05 0.52 7.65 38.05 0.29 0.81 16 24 O -0.38 -4.94 11.65 -35.23 -0.41 -5.35 16 25 C 0.08 0.98 7.44 37.51 0.28 1.26 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.04 1.20 6.06 -51.93 -0.31 0.88 16 28 H -0.01 -0.29 7.99 -51.93 -0.42 -0.71 16 29 H 0.09 1.31 6.83 -51.93 -0.35 0.96 16 30 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 33 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.09 1.75 7.03 -51.93 -0.37 1.38 16 35 H 0.03 0.46 7.33 -51.93 -0.38 0.08 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.46 8.04 -51.93 -0.42 1.04 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.99 6.93 -51.93 -0.36 0.63 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -31.68 351.72 -9.05 -40.73 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.74 Total: 2.51 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.93 Total: -18.69 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.29 Total: -37.89 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.36 Total: -8.67 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.68 -9.05 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886029917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.864 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.16 seconds