Wall clock time and date at job start Tue Mar 31 2020 08:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48497 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47199 * 299.99961 * 3 2 1 6 6 H 1.48502 * 109.46750 * 59.99753 * 3 2 1 7 7 C 1.37880 * 119.99432 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47406 * 175.32445 * 9 7 2 11 11 C 1.46894 * 111.00101 * 200.05325 * 10 9 7 12 12 C 1.50703 * 109.47440 * 66.04905 * 11 10 9 13 13 C 1.34506 * 125.79298 * 89.99866 * 12 11 10 14 14 C 1.41387 * 106.84041 * 180.02562 * 13 12 11 15 15 C 1.34513 * 106.83977 * 359.97438 * 14 13 12 16 16 O 1.34305 * 108.42057 * 359.74247 * 15 14 13 17 17 C 1.46902 * 110.99823 * 76.09511 * 10 9 7 18 18 C 1.53006 * 109.47093 * 200.09482 * 17 10 9 19 19 H 1.08999 * 115.56100 * 329.33827 * 18 17 10 20 20 C 1.53179 * 117.51954 * 115.18721 * 18 17 10 21 21 C 1.52100 * 117.52048 * 183.55765 * 18 17 10 22 22 C 1.53709 * 121.74951 * 3.66505 * 21 18 17 23 23 C 1.54698 * 103.69595 * 143.51763 * 22 21 18 24 24 O 1.44493 * 104.87154 * 23.82675 * 23 22 21 25 25 C 1.44639 * 105.46321 * 320.02871 * 24 23 22 26 26 H 0.97006 * 119.99598 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46858 * 55.32694 * 9 7 2 28 28 H 1.08998 * 109.47473 * 295.32383 * 9 7 2 29 29 H 1.09004 * 109.46913 * 186.04758 * 11 10 9 30 30 H 1.08993 * 109.47285 * 306.03965 * 11 10 9 31 31 H 1.08001 * 126.58119 * 0.02881 * 13 12 11 32 32 H 1.08006 * 126.57559 * 179.97438 * 14 13 12 33 33 H 1.07996 * 125.78586 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47183 * 320.09622 * 17 10 9 35 35 H 1.09000 * 109.46753 * 80.09631 * 17 10 9 36 36 H 1.08999 * 117.52570 * 214.84593 * 20 18 17 37 37 H 1.09001 * 117.52349 * 0.02562 * 20 18 17 38 38 H 1.09001 * 110.57775 * 262.06686 * 22 21 18 39 39 H 1.08995 * 110.58333 * 24.81059 * 22 21 18 40 40 H 1.08994 * 110.36339 * 142.67882 * 23 22 21 41 41 H 1.09002 * 110.35664 * 264.98121 * 23 22 21 42 42 H 1.08998 * 110.41638 * 280.88630 * 25 24 23 43 43 H 1.09000 * 110.41653 * 158.42721 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2014 -3.6135 -0.1140 11 6 1.5306 -4.8313 -0.5882 12 6 1.0518 -4.6232 -2.0019 13 6 1.7534 -4.8916 -3.1176 14 6 0.9283 -4.5477 -4.2130 15 6 -0.2284 -4.0903 -3.7011 16 8 -0.1502 -4.1439 -2.3614 17 6 2.8867 -3.8530 1.1631 18 6 4.1777 -4.6344 0.9104 19 1 4.1579 -5.3121 0.0570 20 6 5.5025 -3.9346 1.2292 21 6 4.9934 -5.0551 2.1233 22 6 4.5079 -4.7873 3.5569 23 6 4.9735 -6.0371 4.3407 24 8 6.0829 -6.5614 3.5777 25 6 5.6985 -6.4189 2.1906 26 1 -0.4850 0.8401 -0.0004 27 1 0.5627 -2.5212 -0.8454 28 1 0.6889 -2.5943 0.9285 29 1 2.2312 -5.6660 -0.5610 30 1 0.6789 -5.0510 0.0554 31 1 2.7549 -5.2928 -3.1673 32 1 1.1788 -4.6355 -5.2600 33 1 -1.0778 -3.7435 -4.2708 34 1 3.1255 -2.8985 1.6319 35 1 2.2365 -4.4288 1.8218 36 1 6.3546 -4.1518 0.5852 37 1 5.4540 -2.9179 1.6192 38 1 4.9750 -3.8877 3.9578 39 1 3.4220 -4.6982 3.5834 40 1 5.3007 -5.7568 5.3419 41 1 4.1700 -6.7716 4.3952 42 1 5.0133 -7.2160 1.9022 43 1 6.5799 -6.4233 1.5494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886029917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:48 Heat of formation + Delta-G solvation = -17.525828 kcal Electronic energy + Delta-G solvation = -23534.695297 eV Core-core repulsion = 20160.779360 eV Total energy + Delta-G solvation = -3373.915938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.35880 -40.90700 -38.68095 -36.77163 -34.72588 -33.78763 -31.60739 -31.22272 -29.69680 -28.36814 -27.07080 -25.70048 -23.71023 -23.11377 -22.48245 -21.78912 -21.01016 -19.90196 -18.57619 -18.18269 -17.27732 -17.10274 -16.96313 -16.55083 -16.14493 -16.00583 -15.62255 -15.34004 -15.23772 -14.44955 -14.08683 -13.74289 -13.70813 -13.58908 -13.51784 -13.39143 -13.16508 -13.09946 -12.72053 -12.66818 -12.51477 -12.31792 -12.20219 -12.01057 -11.69325 -11.30151 -10.90797 -10.71833 -10.67684 -10.61458 -10.48379 -9.33187 -9.03368 -8.19164 -6.28593 0.91034 1.37808 1.38874 1.52014 1.82606 2.27752 2.39131 2.68421 3.09258 3.13010 3.26342 3.61159 3.78111 3.87026 3.95432 4.01365 4.19871 4.24924 4.26335 4.44252 4.45387 4.49062 4.57257 4.58710 4.73240 4.75488 4.83395 4.85077 4.88783 4.97947 4.99980 5.06304 5.10671 5.17152 5.20352 5.25877 5.32281 5.37901 5.65445 5.76541 5.84225 6.06217 6.31772 6.40626 6.53886 6.86682 7.40010 8.91473 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.005475 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.256406 B = 5112.535612 C = 7093.983145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.207 3.793 10 N -0.531 5.531 11 C 0.132 3.868 12 C -0.018 4.018 13 C -0.203 4.203 14 C -0.220 4.220 15 C -0.059 4.059 16 O -0.204 6.204 17 C 0.099 3.901 18 C -0.116 4.116 19 H 0.118 0.882 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.126 4.126 23 C 0.049 3.951 24 O -0.396 6.396 25 C 0.085 3.915 26 H 0.262 0.738 27 H 0.013 0.987 28 H -0.042 1.042 29 H 0.127 0.873 30 H 0.031 0.969 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.225 0.775 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -13.450 0.338 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.081 3.919 10 N -0.256 5.256 11 C 0.005 3.995 12 C -0.068 4.068 13 C -0.223 4.223 14 C -0.239 4.239 15 C -0.126 4.126 16 O -0.101 6.101 17 C -0.028 4.028 18 C -0.135 4.135 19 H 0.136 0.864 20 C -0.192 4.192 21 C -0.158 4.158 22 C -0.164 4.164 23 C -0.027 4.027 24 O -0.315 6.315 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.031 0.969 28 H -0.024 1.024 29 H 0.145 0.855 30 H 0.049 0.951 31 H 0.181 0.819 32 H 0.191 0.809 33 H 0.242 0.758 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.770 -13.219 0.308 15.337 hybrid contribution -0.944 1.214 0.291 1.565 sum 6.826 -12.005 0.599 13.823 Atomic orbital electron populations 1.70113 1.07658 1.27582 1.52152 1.25868 0.95671 1.02983 0.95104 0.85419 0.79091 0.78979 0.77673 1.18711 1.20611 1.20362 1.21435 0.93447 0.90959 1.49270 0.92133 1.19437 0.90240 0.88896 0.93376 1.62053 1.30274 1.04223 1.29037 1.20641 0.97204 0.94411 0.87256 1.22566 0.84375 1.02094 0.97790 1.21774 1.01778 1.07648 0.91089 1.22129 0.94354 1.06248 1.01200 1.24682 1.02737 1.05295 0.79892 1.84065 1.35175 1.65495 1.25358 1.21473 0.93498 0.98525 0.89314 1.22114 0.91423 1.01820 0.98143 0.86368 1.23056 0.97824 0.96312 1.02051 1.22323 1.03624 0.97368 0.92459 1.22414 1.01659 0.99484 0.92811 1.23515 0.89292 0.93758 0.96137 1.89110 1.40697 1.83913 1.17760 1.22878 0.99552 0.93313 0.83410 0.92870 0.96895 1.02446 0.85547 0.95082 0.81884 0.80926 0.75836 0.92257 0.94902 0.87223 0.89900 0.90757 0.90477 0.87840 0.91157 0.90609 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.51 -29.38 8.54 25.60 0.22 -29.16 16 8 H 0.06 3.43 7.78 -2.91 -0.02 3.40 16 9 C 0.21 11.13 4.59 85.56 0.39 11.52 16 10 N -0.53 -22.31 4.34 -905.38 -3.93 -26.24 16 11 C 0.13 4.70 5.30 85.56 0.45 5.15 16 12 C -0.02 -0.69 5.93 24.83 0.15 -0.54 16 13 C -0.20 -6.61 10.81 22.19 0.24 -6.37 16 14 C -0.22 -6.55 10.91 22.19 0.24 -6.31 16 15 C -0.06 -1.91 12.09 66.97 0.81 -1.10 16 16 O -0.20 -8.38 9.61 -2.52 -0.02 -8.41 16 17 C 0.10 3.55 4.22 86.30 0.36 3.92 16 18 C -0.12 -3.20 5.57 -11.03 -0.06 -3.26 16 19 H 0.12 2.95 7.09 -2.39 -0.02 2.93 16 20 C -0.16 -4.08 9.94 30.36 0.30 -3.78 16 21 C -0.16 -3.71 2.50 -52.30 -0.13 -3.84 16 22 C -0.13 -2.89 6.50 31.41 0.20 -2.68 16 23 C 0.05 0.97 7.65 72.56 0.56 1.53 16 24 O -0.40 -9.35 11.65 -148.98 -1.74 -11.09 16 25 C 0.08 1.73 7.44 72.21 0.54 2.27 16 26 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 27 H 0.01 0.77 6.06 -2.39 -0.01 0.76 16 28 H -0.04 -2.46 7.99 -2.39 -0.02 -2.48 16 29 H 0.13 3.47 6.83 -2.39 -0.02 3.45 16 30 H 0.03 1.14 8.12 -2.39 -0.02 1.12 16 31 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.23 5.35 8.06 -2.91 -0.02 5.33 16 34 H 0.06 2.44 7.03 -2.39 -0.02 2.43 16 35 H 0.03 1.12 7.33 -2.39 -0.02 1.10 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 1.83 6.93 -2.39 -0.02 1.82 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 Total: -1.00 -70.13 351.72 2.34 -67.79 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.98 Total: 19.95 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 4.74 Total: -32.11 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -3.64 Total: -83.18 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -1.76 Total: -19.50 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.13 2.34 -67.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886029917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.262 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds