Wall clock time and date at job start Tue Mar 31 2020 08:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47496 * 179.97438 * 11 10 9 13 13 C 1.48536 * 110.99844 * 54.59091 * 12 11 10 14 14 C 1.54324 * 104.66892 * 159.19705 * 13 12 11 15 15 H 1.09002 * 112.55113 * 214.16912 * 14 13 12 16 16 C 1.54160 * 108.86230 * 89.64194 * 14 13 12 17 17 C 1.54845 * 104.32348 * 271.11938 * 16 14 13 18 18 C 1.54843 * 102.73600 * 321.81496 * 17 16 14 19 19 C 1.54167 * 104.32157 * 38.18500 * 18 17 16 20 20 C 1.53002 * 112.51376 * 213.41432 * 19 18 17 21 21 F 1.39906 * 109.46894 * 298.12427 * 20 19 18 22 22 F 1.39902 * 109.47025 * 58.12337 * 20 19 18 23 23 F 1.39898 * 109.47510 * 178.12681 * 20 19 18 24 24 C 1.48531 * 111.00301 * 169.99886 * 12 11 10 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 27 27 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 28 28 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 29 29 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 30 30 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 31 31 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 32 32 H 1.09003 * 110.39699 * 277.99222 * 13 12 11 33 33 H 1.08998 * 110.39525 * 40.40358 * 13 12 11 34 34 H 1.08999 * 110.46553 * 29.83112 * 16 14 13 35 35 H 1.09010 * 110.45906 * 152.28661 * 16 14 13 36 36 H 1.08998 * 110.75907 * 80.12950 * 17 16 14 37 37 H 1.09005 * 110.75683 * 203.32725 * 17 16 14 38 38 H 1.08994 * 110.46828 * 279.47819 * 18 17 16 39 39 H 1.09001 * 110.46611 * 156.88846 * 18 17 16 40 40 H 1.08997 * 110.39497 * 319.60520 * 24 12 11 41 41 H 1.09003 * 110.39615 * 81.88995 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 7 6.0410 -4.0218 -0.0022 13 6 5.4608 -4.7908 -1.1328 14 6 6.4231 -5.9810 -1.3304 15 1 6.5159 -6.2744 -2.3761 16 6 5.9539 -7.1535 -0.4463 17 6 6.6704 -6.9235 0.9070 18 6 8.0642 -6.4080 0.4720 19 6 7.7744 -5.5036 -0.7424 20 6 8.8952 -5.5434 -1.7832 21 9 10.0804 -5.0693 -1.2104 22 9 9.0814 -6.8600 -2.2179 23 9 8.5488 -4.7371 -2.8727 24 6 7.5059 -4.0684 -0.2430 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6809 0.8904 28 1 3.6577 -3.1515 0.8880 29 1 3.6583 -3.1496 -0.8920 30 1 5.9147 -2.1222 -0.8909 31 1 5.9148 -2.1238 0.8891 32 1 4.4630 -5.1475 -0.8773 33 1 5.4269 -4.1763 -2.0324 34 1 4.8723 -7.1226 -0.3149 35 1 6.2568 -8.1051 -0.8832 36 1 6.1476 -6.1716 1.4981 37 1 6.7569 -7.8577 1.4620 38 1 8.7052 -7.2407 0.1826 39 1 8.5250 -5.8321 1.2745 40 1 7.7889 -3.3419 -1.0047 41 1 8.0493 -3.8785 0.6826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886612273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:17 Heat of formation + Delta-G solvation = -167.233348 kcal Electronic energy + Delta-G solvation = -24633.830471 eV Core-core repulsion = 20711.565988 eV Total energy + Delta-G solvation = -3922.264483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.31115 -47.79077 -47.77660 -40.47686 -36.12947 -33.55645 -31.86132 -31.25729 -29.81808 -27.12407 -25.81593 -24.81728 -23.23907 -21.24136 -20.79070 -20.30750 -19.59026 -18.45594 -18.35522 -17.64504 -16.62678 -16.14042 -15.13058 -14.80761 -14.64998 -14.54160 -14.36505 -14.20748 -14.11074 -14.05103 -13.93422 -13.85404 -13.48092 -13.28655 -12.68257 -12.32562 -12.27234 -11.81469 -11.65029 -11.45148 -11.26909 -11.23083 -11.07177 -10.93147 -10.83492 -10.75713 -10.53940 -9.93146 -9.76232 -9.60802 -9.18439 -8.54146 -8.42910 -6.04616 -4.02510 2.49973 3.30213 3.37683 3.41012 3.48931 3.58671 3.68718 4.15071 4.34233 4.34929 4.42113 4.44847 4.91465 5.00195 5.06278 5.10371 5.24142 5.29410 5.35042 5.44763 5.51613 5.54789 5.65141 5.72231 5.78571 5.83016 5.89188 5.95490 5.99489 6.09528 6.27818 6.44626 6.52105 6.75470 6.94970 7.11099 7.29760 7.42953 7.79295 8.53890 9.00512 9.58075 11.08932 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.003660 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.197670 B = 7648.666036 C = 8101.834155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.041 3.959 12 N -0.498 5.498 13 C 0.038 3.962 14 C -0.085 4.085 15 H 0.088 0.912 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.102 4.102 19 C -0.118 4.118 20 C 0.465 3.535 21 F -0.182 7.182 22 F -0.181 7.181 23 F -0.181 7.181 24 C 0.045 3.955 25 H 0.263 0.737 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.212 -14.677 -1.478 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.214 1.214 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.087 4.087 12 N -0.221 5.221 13 C -0.089 4.089 14 C -0.104 4.104 15 H 0.106 0.894 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.120 4.120 20 C 0.411 3.589 21 F -0.164 7.164 22 F -0.163 7.163 23 F -0.163 7.163 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.924 -14.761 -0.978 24.020 hybrid contribution 0.866 1.444 -1.120 2.023 sum 19.791 -13.317 -2.098 23.946 Atomic orbital electron populations 1.69918 1.06304 1.26855 1.51255 1.25035 0.94722 0.99160 0.94599 0.86774 0.80315 0.83659 0.78499 1.20275 1.19114 1.21419 1.21128 0.89456 0.94437 1.50669 0.91046 1.19549 0.97220 0.92198 0.96137 1.21510 0.90630 0.99916 1.01673 1.22542 0.98279 0.87178 1.00667 1.65511 1.02082 1.13850 1.40679 1.23246 0.98810 0.93634 0.93242 1.22544 0.91344 0.96846 0.99671 0.89383 1.22367 1.01062 0.96479 0.95025 1.22417 0.94239 1.01300 0.97258 1.22345 0.99134 0.97807 0.94652 1.23201 0.93333 1.00633 0.94826 1.20316 0.83238 0.73373 0.82010 1.93176 1.50281 1.88430 1.84493 1.93164 1.95770 1.36615 1.90725 1.93184 1.91992 1.73753 1.57338 1.23169 0.92203 0.91952 1.00986 0.92760 0.96878 0.97017 0.91874 0.92744 0.94897 0.90692 0.88654 0.93247 0.90399 0.91699 0.89239 0.91444 0.91120 0.90158 0.93130 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.90 4.87 -26.73 -0.13 -2.03 16 11 C 0.04 0.64 5.06 -3.83 -0.02 0.62 16 12 N -0.50 -6.56 4.71 -230.10 -1.08 -7.65 16 13 C 0.04 0.48 4.54 -2.22 -0.01 0.47 16 14 C -0.09 -0.88 3.29 -88.32 -0.29 -1.17 16 15 H 0.09 0.89 7.75 -51.93 -0.40 0.49 16 16 C -0.11 -1.02 6.27 -25.15 -0.16 -1.18 16 17 C -0.11 -1.02 6.52 -24.79 -0.16 -1.18 16 18 C -0.10 -0.90 5.68 -25.15 -0.14 -1.04 16 19 C -0.12 -1.21 0.49 -152.20 -0.07 -1.29 16 20 C 0.47 5.08 2.21 37.16 0.08 5.16 16 21 F -0.18 -2.03 17.01 2.25 0.04 -1.99 16 22 F -0.18 -1.97 16.52 2.25 0.04 -1.94 16 23 F -0.18 -2.20 16.39 2.25 0.04 -2.16 16 24 C 0.05 0.52 5.27 -2.23 -0.01 0.51 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.04 6.84 -51.93 -0.35 0.68 16 30 H 0.03 0.52 7.88 -51.93 -0.41 0.11 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.22 6.96 -51.93 -0.36 0.86 16 33 H 0.05 0.66 8.00 -51.93 -0.42 0.24 16 34 H 0.08 0.72 7.45 -51.93 -0.39 0.34 16 35 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.59 7.51 -51.93 -0.39 0.20 16 39 H 0.08 0.67 7.45 -51.93 -0.39 0.28 16 40 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 41 H 0.09 0.98 7.45 -51.93 -0.39 0.59 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -29.83 325.94 -7.72 -37.55 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.31 Total: -3.81 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.46 Total: -14.83 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.31 Total: -34.82 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.83 -7.72 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886612273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.684 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds