Wall clock time and date at job start Tue Mar 31 2020 08:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47496 * 179.97438 * 11 10 9 13 13 C 1.48536 * 110.99844 * 54.59091 * 12 11 10 14 14 C 1.54324 * 104.66892 * 159.19705 * 13 12 11 15 15 H 1.09002 * 112.55113 * 214.16912 * 14 13 12 16 16 C 1.54160 * 108.86230 * 89.64194 * 14 13 12 17 17 C 1.54845 * 104.32348 * 271.11938 * 16 14 13 18 18 C 1.54843 * 102.73600 * 321.81496 * 17 16 14 19 19 C 1.54167 * 104.32157 * 38.18500 * 18 17 16 20 20 C 1.53002 * 112.51376 * 213.41432 * 19 18 17 21 21 F 1.39906 * 109.46894 * 298.12427 * 20 19 18 22 22 F 1.39902 * 109.47025 * 58.12337 * 20 19 18 23 23 F 1.39898 * 109.47510 * 178.12681 * 20 19 18 24 24 C 1.48531 * 111.00301 * 169.99886 * 12 11 10 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 27 27 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 28 28 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 29 29 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 30 30 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 31 31 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 32 32 H 1.09003 * 110.39699 * 277.99222 * 13 12 11 33 33 H 1.08998 * 110.39525 * 40.40358 * 13 12 11 34 34 H 1.08999 * 110.46553 * 29.83112 * 16 14 13 35 35 H 1.09010 * 110.45906 * 152.28661 * 16 14 13 36 36 H 1.08998 * 110.75907 * 80.12950 * 17 16 14 37 37 H 1.09005 * 110.75683 * 203.32725 * 17 16 14 38 38 H 1.08994 * 110.46828 * 279.47819 * 18 17 16 39 39 H 1.09001 * 110.46611 * 156.88846 * 18 17 16 40 40 H 1.08997 * 110.39497 * 319.60520 * 24 12 11 41 41 H 1.09003 * 110.39615 * 81.88995 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 7 6.0410 -4.0218 -0.0022 13 6 5.4608 -4.7908 -1.1328 14 6 6.4231 -5.9810 -1.3304 15 1 6.5159 -6.2744 -2.3761 16 6 5.9539 -7.1535 -0.4463 17 6 6.6704 -6.9235 0.9070 18 6 8.0642 -6.4080 0.4720 19 6 7.7744 -5.5036 -0.7424 20 6 8.8952 -5.5434 -1.7832 21 9 10.0804 -5.0693 -1.2104 22 9 9.0814 -6.8600 -2.2179 23 9 8.5488 -4.7371 -2.8727 24 6 7.5059 -4.0684 -0.2430 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6809 0.8904 28 1 3.6577 -3.1515 0.8880 29 1 3.6583 -3.1496 -0.8920 30 1 5.9147 -2.1222 -0.8909 31 1 5.9148 -2.1238 0.8891 32 1 4.4630 -5.1475 -0.8773 33 1 5.4269 -4.1763 -2.0324 34 1 4.8723 -7.1226 -0.3149 35 1 6.2568 -8.1051 -0.8832 36 1 6.1476 -6.1716 1.4981 37 1 6.7569 -7.8577 1.4620 38 1 8.7052 -7.2407 0.1826 39 1 8.5250 -5.8321 1.2745 40 1 7.7889 -3.3419 -1.0047 41 1 8.0493 -3.8785 0.6826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886612273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:09 Heat of formation + Delta-G solvation = -184.228165 kcal Electronic energy + Delta-G solvation = -24634.567421 eV Core-core repulsion = 20711.565988 eV Total energy + Delta-G solvation = -3923.001434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.18021 -48.67472 -48.63767 -41.37532 -37.32869 -35.33814 -33.51711 -32.24931 -30.88932 -28.66208 -26.66160 -25.98071 -24.51799 -22.65687 -21.73304 -21.44099 -20.67336 -19.32453 -19.22507 -18.96911 -18.35538 -17.11240 -16.51037 -15.88017 -15.78762 -15.64493 -15.50312 -15.19718 -15.13307 -15.06970 -14.83448 -14.79604 -14.66518 -14.53202 -14.21946 -13.69995 -13.46928 -13.15223 -13.03095 -12.63908 -12.44854 -12.24250 -12.10707 -11.94411 -11.85865 -11.75950 -11.72545 -11.50289 -11.43708 -11.31299 -11.20682 -10.75833 -9.50846 -8.29132 -6.33166 1.36074 1.37843 1.49627 1.64282 2.36409 2.61263 2.74024 2.84287 3.06447 3.12673 3.48197 3.50801 3.60121 4.05438 4.12427 4.17727 4.22192 4.31199 4.37893 4.45559 4.55318 4.64409 4.70480 4.72534 4.83106 4.86481 4.93226 4.97171 5.02424 5.06413 5.10991 5.24689 5.27335 5.50079 5.55725 5.59249 5.65757 5.78951 5.96723 6.29837 6.75089 7.31535 8.87848 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.003660 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.197670 B = 7648.666036 C = 8101.834155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.247 1.247 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.030 0.970 9 C -0.011 4.011 10 C -0.089 4.089 11 C 0.052 3.948 12 N -0.498 5.498 13 C 0.036 3.964 14 C -0.082 4.082 15 H 0.091 0.909 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.099 4.099 19 C -0.114 4.114 20 C 0.467 3.533 21 F -0.182 7.182 22 F -0.180 7.180 23 F -0.190 7.190 24 C 0.045 3.955 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.717 -14.720 -1.144 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.171 1.171 6 H -0.211 1.211 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.049 4.049 10 C -0.127 4.127 11 C -0.076 4.076 12 N -0.221 5.221 13 C -0.092 4.092 14 C -0.101 4.101 15 H 0.110 0.890 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.116 4.116 20 C 0.412 3.588 21 F -0.164 7.164 22 F -0.161 7.161 23 F -0.172 7.172 24 C -0.083 4.083 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.449 -14.826 -0.644 26.082 hybrid contribution 0.022 1.366 -1.245 1.848 sum 21.470 -13.460 -1.889 25.411 Atomic orbital electron populations 1.70077 1.08350 1.28138 1.52796 1.26038 0.95611 1.03581 0.94135 0.85633 0.79422 0.78156 0.79274 1.18986 1.17080 1.21082 1.21499 0.92204 0.93034 1.50228 0.95117 1.19498 0.93842 0.95083 0.96435 1.21302 0.93434 0.96992 1.00930 1.22306 0.95340 0.88829 1.01127 1.65481 1.03398 1.12239 1.41021 1.23250 0.99125 0.94336 0.92494 1.22530 0.90917 0.96403 1.00296 0.89044 1.22376 1.00854 0.96502 0.95047 1.22382 0.93974 1.01624 0.96930 1.22378 0.99253 0.97893 0.94069 1.23185 0.92948 1.00207 0.95214 1.20365 0.83340 0.73257 0.81822 1.93177 1.50329 1.88445 1.84434 1.93167 1.95771 1.36463 1.90725 1.93170 1.92072 1.74054 1.57872 1.23228 0.90802 0.92674 1.01618 0.92529 0.96530 0.96111 0.92837 0.93408 0.94823 0.89847 0.89526 0.94394 0.90902 0.90253 0.90854 0.89791 0.90102 0.89317 0.93641 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.00 0.17 5.47 84.66 0.46 0.63 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 7 C -0.53 -30.90 9.66 25.60 0.25 -30.65 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.38 4.87 30.59 0.15 -3.23 16 11 C 0.05 1.55 5.06 86.30 0.44 1.98 16 12 N -0.50 -12.50 4.71 -881.90 -4.15 -16.65 16 13 C 0.04 0.88 4.54 86.44 0.39 1.27 16 14 C -0.08 -1.59 3.29 -9.30 -0.03 -1.63 16 15 H 0.09 1.72 7.75 -2.39 -0.02 1.70 16 16 C -0.11 -1.81 6.27 31.62 0.20 -1.62 16 17 C -0.11 -1.73 6.52 31.85 0.21 -1.53 16 18 C -0.10 -1.48 5.68 31.62 0.18 -1.30 16 19 C -0.11 -2.10 0.49 -50.69 -0.02 -2.12 16 20 C 0.47 9.26 2.21 71.98 0.16 9.42 16 21 F -0.18 -3.66 17.01 44.97 0.76 -2.90 16 22 F -0.18 -3.53 16.52 44.97 0.74 -2.78 16 23 F -0.19 -4.35 16.39 44.97 0.74 -3.61 16 24 C 0.04 0.94 5.27 86.43 0.46 1.39 16 25 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 26 H 0.02 0.75 7.20 -2.39 -0.02 0.74 16 27 H 0.02 0.92 7.57 -2.39 -0.02 0.91 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.86 6.84 -2.38 -0.02 1.84 16 30 H 0.03 1.00 7.88 -2.39 -0.02 0.98 16 31 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.09 2.24 6.96 -2.39 -0.02 2.23 16 33 H 0.04 1.01 8.00 -2.39 -0.02 0.99 16 34 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.40 7.71 -2.39 -0.02 1.38 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.08 7.51 -2.39 -0.02 1.07 16 39 H 0.09 1.21 7.45 -2.39 -0.02 1.19 16 40 H 0.05 1.02 7.15 -2.39 -0.02 1.00 16 41 H 0.11 1.96 7.45 -2.39 -0.02 1.95 16 Total: -1.00 -64.49 325.94 4.19 -60.30 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.96 Total: 7.13 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 2.95 Total: -27.76 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -3.85 Total: -76.65 kcal Atomic # 9 Polarization: -11.54 SS G_CDS: 2.24 Total: -9.29 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -64.49 4.19 -60.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886612273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.931 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds