Wall clock time and date at job start Tue Mar 31 2020 09:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99528 * 2 1 4 4 H 1.48501 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47259 * 299.99899 * 3 2 1 6 6 H 1.48497 * 109.46947 * 60.00162 * 3 2 1 7 7 C 1.37873 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47040 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47262 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99680 * 355.08104 * 13 12 11 15 15 N 1.34768 * 119.99940 * 175.07743 * 13 12 11 16 16 C 1.46504 * 119.99919 * 185.32177 * 15 13 12 17 17 C 1.50705 * 109.47066 * 90.00299 * 16 15 13 18 18 C 1.41383 * 126.57855 * 269.71771 * 17 16 15 19 19 C 1.34514 * 106.83910 * 179.83523 * 18 17 16 20 20 O 1.34302 * 108.41933 * 0.42405 * 19 18 17 21 21 C 1.34300 * 109.47979 * 359.72743 * 20 19 18 22 22 C 1.46494 * 120.00505 * 5.32436 * 15 13 12 23 23 C 1.53001 * 117.50319 * 182.77439 * 22 15 13 24 24 C 1.52998 * 117.50054 * 114.11125 * 22 15 13 25 25 H 0.96993 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47171 * 59.99426 * 9 7 2 27 27 H 1.08994 * 109.47207 * 299.99656 * 9 7 2 28 28 H 1.09006 * 109.46879 * 60.00567 * 10 9 7 29 29 H 1.08996 * 109.47876 * 300.00345 * 10 9 7 30 30 H 1.09001 * 109.47324 * 60.00771 * 11 10 9 31 31 H 1.08994 * 109.47535 * 300.00455 * 11 10 9 32 32 H 1.09007 * 109.46705 * 299.99996 * 12 11 10 33 33 H 1.08996 * 109.47634 * 60.00016 * 12 11 10 34 34 H 1.09005 * 109.47206 * 210.00177 * 16 15 13 35 35 H 1.08997 * 109.47287 * 330.00732 * 16 15 13 36 36 H 1.08004 * 126.58115 * 359.97438 * 18 17 16 37 37 H 1.08004 * 125.79236 * 180.11427 * 19 18 17 38 38 H 1.08000 * 125.79031 * 180.02562 * 21 20 19 39 39 H 1.09004 * 115.54960 * 328.44810 * 22 15 13 40 40 H 1.08994 * 117.49772 * 359.97438 * 23 22 15 41 41 H 1.08999 * 117.50114 * 145.02589 * 23 22 15 42 42 H 1.09007 * 117.50204 * 214.98215 * 24 22 15 43 43 H 1.08999 * 117.50136 * 359.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1500 0.0018 13 6 1.7214 -7.4551 0.0018 14 8 0.5119 -7.4570 0.0914 15 7 2.3916 -8.6200 -0.0978 16 6 1.6552 -9.8811 -0.2153 17 6 1.4121 -10.1871 -1.6708 18 6 0.2920 -9.7939 -2.4387 19 6 0.4833 -10.2737 -3.6808 20 8 1.6487 -10.9408 -3.7032 21 6 2.2163 -10.8917 -2.4870 22 6 3.8565 -8.6255 -0.0886 23 6 4.5592 -9.9724 -0.2702 24 6 4.5530 -9.2906 1.1003 25 1 -0.4850 0.8399 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.8720 -3.6042 0.8906 29 1 2.8722 -3.6043 -0.8893 30 1 0.8536 -5.0451 -0.8886 31 1 0.8541 -5.0446 0.8913 32 1 3.1015 -6.0926 -0.8882 33 1 3.1014 -6.0918 0.8917 34 1 2.2385 -10.6856 0.2326 35 1 0.6998 -9.7935 0.3020 36 1 -0.5537 -9.2169 -2.0948 37 1 -0.1888 -10.1484 -4.5168 38 1 3.1588 -11.3412 -2.2112 39 1 4.3327 -7.7468 -0.5236 40 1 3.9315 -10.8546 -0.3961 41 1 5.4978 -9.9798 -0.8243 42 1 5.4876 -8.8496 1.4472 43 1 3.9214 -9.7237 1.8758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889090351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:35 Heat of formation + Delta-G solvation = -9.122052 kcal Electronic energy + Delta-G solvation = -22696.255152 eV Core-core repulsion = 19322.703630 eV Total energy + Delta-G solvation = -3373.551522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.74100 -40.13297 -37.68495 -35.02359 -34.38277 -32.76157 -32.46492 -30.36511 -29.53580 -27.06674 -25.18184 -23.02413 -22.70628 -22.12430 -21.67918 -20.74045 -19.97059 -18.83031 -17.68791 -17.31523 -16.49872 -16.13470 -15.80615 -15.74100 -15.10005 -14.94077 -14.44381 -14.11237 -13.99500 -13.45783 -12.99544 -12.90368 -12.76177 -12.50196 -12.09789 -12.05451 -11.62802 -11.59312 -11.44256 -11.33471 -10.99196 -10.94823 -10.49915 -10.46214 -10.37283 -10.09548 -9.64438 -9.58186 -9.19401 -8.95303 -8.79618 -8.65963 -8.28907 -5.93491 -3.95867 1.53733 2.26392 2.66004 2.93281 3.03232 3.34300 3.41404 3.45421 3.48529 4.31565 4.44307 4.50195 4.51219 4.52514 4.71316 4.72372 4.86931 5.11097 5.25246 5.35490 5.37673 5.41885 5.45979 5.46898 5.54761 5.61916 5.70381 5.85708 5.91763 5.96811 6.17596 6.27449 6.32871 6.37351 6.58449 6.87446 6.90992 7.04670 7.22139 7.31267 7.76632 7.92732 8.08256 8.22956 8.50169 9.12131 9.67743 11.17900 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.002865 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.906608 B = 9770.803284 C =10478.263076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.522 3.478 14 O -0.528 6.528 15 N -0.589 5.589 16 C 0.179 3.821 17 C -0.194 4.194 18 C -0.191 4.191 19 C -0.047 4.047 20 O -0.179 6.179 21 C -0.032 4.032 22 C 0.075 3.925 23 C -0.189 4.189 24 C -0.191 4.191 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.150 0.850 37 H 0.202 0.798 38 H 0.198 0.802 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -26.230 -2.819 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.176 4.176 13 C 0.312 3.688 14 O -0.403 6.403 15 N -0.322 5.322 16 C 0.057 3.943 17 C -0.197 4.197 18 C -0.211 4.211 19 C -0.114 4.114 20 O -0.074 6.074 21 C -0.101 4.101 22 C -0.030 4.030 23 C -0.226 4.226 24 C -0.230 4.230 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.168 0.832 37 H 0.219 0.781 38 H 0.215 0.785 39 H 0.150 0.850 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.719 -26.232 -3.010 27.510 hybrid contribution 0.425 1.008 0.089 1.098 sum 8.144 -25.224 -2.921 26.667 Atomic orbital electron populations 1.69985 1.06042 1.26370 1.51090 1.25044 0.94837 0.99227 0.95500 0.86560 0.80091 0.83955 0.77533 1.19775 1.21063 1.21062 1.21325 0.93017 0.91201 1.50183 0.92711 1.19098 0.94067 0.91286 0.97294 1.21643 0.99060 0.94002 1.00021 1.21461 0.97040 0.92758 1.02863 1.21820 1.00085 0.91929 1.03767 1.21043 0.88058 0.85234 0.74515 1.90687 1.14316 1.87041 1.48297 1.47565 1.04614 1.06497 1.73523 1.19642 0.98147 0.85815 0.90689 1.20796 0.96693 1.03909 0.98266 1.21862 1.00971 1.04673 0.93569 1.24040 0.87987 0.99525 0.99891 1.84058 1.30998 1.59688 1.32690 1.23857 0.99685 1.04186 0.82343 1.21747 0.80266 0.98108 1.02896 1.23407 1.02657 0.95887 1.00687 1.23458 1.03092 1.04384 0.92046 0.93119 0.96632 0.96577 0.93478 0.93548 0.92014 0.91719 0.89433 0.89015 0.89961 0.88682 0.83183 0.78136 0.78527 0.85006 0.88375 0.87645 0.87730 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.90 4.52 -26.73 -0.12 -2.02 16 12 C -0.14 -1.91 4.33 -27.88 -0.12 -2.03 16 13 C 0.52 7.65 7.66 -10.99 -0.08 7.57 16 14 O -0.53 -9.69 15.54 5.56 0.09 -9.60 16 15 N -0.59 -6.56 2.78 -167.47 -0.47 -7.02 16 16 C 0.18 1.83 5.39 -5.19 -0.03 1.80 16 17 C -0.19 -2.06 5.75 -104.74 -0.60 -2.67 16 18 C -0.19 -2.23 10.87 -39.70 -0.43 -2.66 16 19 C -0.05 -0.47 12.09 29.42 0.36 -0.11 16 20 O -0.18 -1.84 10.65 5.72 0.06 -1.78 16 21 C -0.03 -0.29 11.56 29.42 0.34 0.05 16 22 C 0.07 0.61 5.95 -67.93 -0.40 0.21 16 23 C -0.19 -1.08 9.41 -26.69 -0.25 -1.33 16 24 C -0.19 -1.25 10.35 -26.69 -0.28 -1.52 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 32 H 0.09 1.09 7.50 -51.93 -0.39 0.70 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.61 6.18 -51.93 -0.32 0.29 16 35 H 0.09 1.13 7.36 -51.93 -0.38 0.75 16 36 H 0.15 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.20 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.20 1.10 6.72 -52.49 -0.35 0.75 16 39 H 0.13 1.02 6.86 -51.93 -0.36 0.66 16 40 H 0.10 0.50 4.74 -51.93 -0.25 0.26 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -34.79 358.50 -8.17 -42.96 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.66 Total: -1.31 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.31 Total: -18.66 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.27 Total: -34.02 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.15 Total: -11.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.79 -8.17 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889090351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.834 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds