Wall clock time and date at job start Tue Mar 31 2020 09:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99528 * 2 1 4 4 H 1.48501 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47259 * 299.99899 * 3 2 1 6 6 H 1.48497 * 109.46947 * 60.00162 * 3 2 1 7 7 C 1.37873 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47040 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47262 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99680 * 355.08104 * 13 12 11 15 15 N 1.34768 * 119.99940 * 175.07743 * 13 12 11 16 16 C 1.46504 * 119.99919 * 185.32177 * 15 13 12 17 17 C 1.50705 * 109.47066 * 90.00299 * 16 15 13 18 18 C 1.41383 * 126.57855 * 269.71771 * 17 16 15 19 19 C 1.34514 * 106.83910 * 179.83523 * 18 17 16 20 20 O 1.34302 * 108.41933 * 0.42405 * 19 18 17 21 21 C 1.34300 * 109.47979 * 359.72743 * 20 19 18 22 22 C 1.46494 * 120.00505 * 5.32436 * 15 13 12 23 23 C 1.53001 * 117.50319 * 182.77439 * 22 15 13 24 24 C 1.52998 * 117.50054 * 114.11125 * 22 15 13 25 25 H 0.96993 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47171 * 59.99426 * 9 7 2 27 27 H 1.08994 * 109.47207 * 299.99656 * 9 7 2 28 28 H 1.09006 * 109.46879 * 60.00567 * 10 9 7 29 29 H 1.08996 * 109.47876 * 300.00345 * 10 9 7 30 30 H 1.09001 * 109.47324 * 60.00771 * 11 10 9 31 31 H 1.08994 * 109.47535 * 300.00455 * 11 10 9 32 32 H 1.09007 * 109.46705 * 299.99996 * 12 11 10 33 33 H 1.08996 * 109.47634 * 60.00016 * 12 11 10 34 34 H 1.09005 * 109.47206 * 210.00177 * 16 15 13 35 35 H 1.08997 * 109.47287 * 330.00732 * 16 15 13 36 36 H 1.08004 * 126.58115 * 359.97438 * 18 17 16 37 37 H 1.08004 * 125.79236 * 180.11427 * 19 18 17 38 38 H 1.08000 * 125.79031 * 180.02562 * 21 20 19 39 39 H 1.09004 * 115.54960 * 328.44810 * 22 15 13 40 40 H 1.08994 * 117.49772 * 359.97438 * 23 22 15 41 41 H 1.08999 * 117.50114 * 145.02589 * 23 22 15 42 42 H 1.09007 * 117.50204 * 214.98215 * 24 22 15 43 43 H 1.08999 * 117.50136 * 359.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1500 0.0018 13 6 1.7214 -7.4551 0.0018 14 8 0.5119 -7.4570 0.0914 15 7 2.3916 -8.6200 -0.0978 16 6 1.6552 -9.8811 -0.2153 17 6 1.4121 -10.1871 -1.6708 18 6 0.2920 -9.7939 -2.4387 19 6 0.4833 -10.2737 -3.6808 20 8 1.6487 -10.9408 -3.7032 21 6 2.2163 -10.8917 -2.4870 22 6 3.8565 -8.6255 -0.0886 23 6 4.5592 -9.9724 -0.2702 24 6 4.5530 -9.2906 1.1003 25 1 -0.4850 0.8399 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.8720 -3.6042 0.8906 29 1 2.8722 -3.6043 -0.8893 30 1 0.8536 -5.0451 -0.8886 31 1 0.8541 -5.0446 0.8913 32 1 3.1015 -6.0926 -0.8882 33 1 3.1014 -6.0918 0.8917 34 1 2.2385 -10.6856 0.2326 35 1 0.6998 -9.7935 0.3020 36 1 -0.5537 -9.2169 -2.0948 37 1 -0.1888 -10.1484 -4.5168 38 1 3.1588 -11.3412 -2.2112 39 1 4.3327 -7.7468 -0.5236 40 1 3.9315 -10.8546 -0.3961 41 1 5.4978 -9.9798 -0.8243 42 1 5.4876 -8.8496 1.4472 43 1 3.9214 -9.7237 1.8758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889090351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:34 Heat of formation + Delta-G solvation = -29.552217 kcal Electronic energy + Delta-G solvation = -22697.141070 eV Core-core repulsion = 19322.703630 eV Total energy + Delta-G solvation = -3374.437441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.51058 -41.11588 -38.53100 -36.68526 -35.27468 -34.59505 -33.49856 -31.70239 -30.72518 -28.29526 -26.75454 -24.22716 -23.43476 -23.15850 -22.44078 -21.89316 -21.46925 -19.70078 -18.48216 -18.41801 -18.24780 -17.34386 -16.87429 -16.67724 -16.47515 -16.04642 -15.58328 -15.35746 -15.03496 -14.56226 -14.21881 -14.08766 -13.77881 -13.70842 -13.52114 -13.40637 -13.09811 -12.84588 -12.63133 -12.31341 -12.18664 -12.13945 -12.12023 -11.97460 -11.58378 -11.39345 -11.31474 -11.10993 -10.96181 -10.56232 -10.55017 -9.59485 -9.45231 -8.19015 -6.31381 0.80134 1.40112 1.40813 1.41440 1.54970 1.59959 2.16267 2.26192 2.41843 2.95192 3.13672 3.48653 3.83203 3.84036 3.87510 4.01597 4.04469 4.08872 4.12170 4.18309 4.39864 4.53494 4.63058 4.66720 4.75724 4.79936 4.83898 4.84394 4.98514 5.05783 5.13051 5.16969 5.24298 5.29145 5.31659 5.35043 5.47392 5.52840 5.56262 5.76738 5.87146 6.13871 6.24758 6.36742 6.87108 7.16735 7.38345 8.93555 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.002865 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.906608 B = 9770.803284 C =10478.263076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.094 4.094 12 C -0.124 4.124 13 C 0.515 3.485 14 O -0.581 6.581 15 N -0.579 5.579 16 C 0.181 3.819 17 C -0.215 4.215 18 C -0.228 4.228 19 C -0.041 4.041 20 O -0.184 6.184 21 C -0.016 4.016 22 C 0.043 3.957 23 C -0.168 4.168 24 C -0.185 4.185 25 H 0.263 0.737 26 H -0.017 1.017 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.128 0.872 37 H 0.229 0.771 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.230 -27.373 -3.280 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.164 4.164 13 C 0.305 3.695 14 O -0.460 6.460 15 N -0.310 5.310 16 C 0.059 3.941 17 C -0.217 4.217 18 C -0.248 4.248 19 C -0.107 4.107 20 O -0.079 6.079 21 C -0.084 4.084 22 C -0.061 4.061 23 C -0.206 4.206 24 C -0.224 4.224 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.245 0.755 38 H 0.252 0.748 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.136 0.864 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.563 -27.419 -3.473 29.959 hybrid contribution -0.784 1.300 0.235 1.536 sum 10.780 -26.118 -3.238 28.440 Atomic orbital electron populations 1.70141 1.08099 1.27705 1.51945 1.26108 0.95793 1.03789 0.94765 0.85317 0.79217 0.78319 0.77692 1.18012 1.20448 1.20453 1.21778 0.93762 0.92166 1.50155 0.91527 1.19051 0.94661 0.93823 0.94259 1.21436 0.97805 0.92639 1.01283 1.21241 0.97442 0.93731 1.00822 1.21672 0.98927 0.89736 1.06040 1.21133 0.87478 0.86516 0.74372 1.90672 1.16450 1.87845 1.51075 1.47520 1.06159 1.05614 1.71665 1.19682 0.97526 0.86210 0.90713 1.20870 0.97046 1.05216 0.98585 1.21930 1.01476 1.06162 0.95184 1.24480 0.88022 0.98311 0.99932 1.84083 1.30996 1.59571 1.33295 1.24452 1.00067 1.02598 0.81273 1.22076 0.78231 1.00336 1.05443 1.23544 1.02866 0.94361 0.99780 1.23494 1.03018 1.03865 0.91992 0.92848 0.99813 0.99732 0.92012 0.92141 0.94207 0.93856 0.87064 0.86601 0.86721 0.91428 0.85427 0.75501 0.74848 0.84299 0.87538 0.85566 0.86396 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.08 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.96 5.15 30.59 0.16 -3.81 16 11 C -0.09 -3.59 4.52 30.60 0.14 -3.45 16 12 C -0.12 -3.39 4.33 29.85 0.13 -3.26 16 13 C 0.51 15.34 7.66 87.66 0.67 16.01 16 14 O -0.58 -22.79 15.54 -3.03 -0.05 -22.84 16 15 N -0.58 -12.32 2.78 -802.14 -2.23 -14.55 16 16 C 0.18 3.58 5.39 85.63 0.46 4.05 16 17 C -0.21 -4.42 5.75 -19.94 -0.11 -4.54 16 18 C -0.23 -5.53 10.87 22.19 0.24 -5.28 16 19 C -0.04 -0.77 12.09 66.97 0.81 0.04 16 20 O -0.18 -3.41 10.65 -2.45 -0.03 -3.44 16 21 C -0.02 -0.24 11.56 66.97 0.77 0.53 16 22 C 0.04 0.58 5.95 44.99 0.27 0.84 16 23 C -0.17 -1.20 9.41 30.62 0.29 -0.92 16 24 C -0.19 -1.79 10.35 30.62 0.32 -1.47 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 27 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.80 8.05 -2.39 -0.02 1.78 16 32 H 0.11 2.52 7.50 -2.38 -0.02 2.50 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 1.45 6.18 -2.38 -0.01 1.44 16 35 H 0.07 1.72 7.36 -2.39 -0.02 1.70 16 36 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.24 1.55 6.72 -2.91 -0.02 1.53 16 39 H 0.14 1.67 6.86 -2.38 -0.02 1.66 16 40 H 0.11 0.59 4.74 -2.39 -0.01 0.58 16 41 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.71 358.50 5.98 -73.73 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.99 Total: 10.85 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 4.98 Total: -31.55 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -1.95 Total: -73.95 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.07 Total: -26.27 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.71 5.98 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889090351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.176 kcal (2) G-P(sol) polarization free energy of solvation -79.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds