Wall clock time and date at job start Tue Mar 31 2020 09:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99909 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00395 * 180.02562 * 13 12 11 16 16 C 1.47068 * 136.05487 * 359.63118 * 15 13 12 17 17 C 1.53750 * 87.88568 * 152.96213 * 16 15 13 18 18 C 1.53003 * 114.08325 * 139.78085 * 17 16 15 19 19 C 1.50701 * 109.47220 * 91.56203 * 18 17 16 20 20 C 1.41383 * 126.57822 * 89.99961 * 19 18 17 21 21 C 1.34512 * 106.83952 * 179.97438 * 20 19 18 22 22 O 1.34302 * 108.41931 * 359.97438 * 21 20 19 23 23 C 1.34304 * 109.48036 * 359.77892 * 22 21 20 24 24 C 1.47057 * 136.05723 * 180.02562 * 15 13 12 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 33 33 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 34 34 H 1.08998 * 113.46590 * 267.69914 * 16 15 13 35 35 H 1.09004 * 113.46698 * 38.13371 * 16 15 13 36 36 H 1.09004 * 114.39875 * 272.67621 * 17 16 15 37 37 H 1.09005 * 109.46744 * 211.55998 * 18 17 16 38 38 H 1.08999 * 109.47172 * 331.55839 * 18 17 16 39 39 H 1.08004 * 126.57836 * 359.92149 * 20 19 18 40 40 H 1.07999 * 125.78978 * 179.97438 * 21 20 19 41 41 H 1.07994 * 125.79248 * 180.23405 * 23 22 21 42 42 H 1.09001 * 113.47200 * 321.86010 * 24 15 13 43 43 H 1.09003 * 113.47165 * 92.24742 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1501 0.0018 13 6 1.7208 -7.4552 0.0018 14 8 0.5080 -7.4552 0.0009 15 7 2.3946 -8.6225 0.0029 16 6 3.8079 -9.0293 -0.0024 17 6 3.3782 -10.3262 0.7028 18 6 4.1011 -11.5782 0.2021 19 6 5.3318 -11.8161 1.0386 20 6 5.4107 -12.5868 2.2213 21 6 6.6886 -12.5319 2.6376 22 8 7.3839 -11.7736 1.7744 23 6 6.5674 -11.3411 0.7998 24 6 2.0402 -10.0497 0.0028 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.8537 -5.0446 0.8914 31 1 0.8531 -5.0451 -0.8886 32 1 3.1010 -6.0928 -0.8881 33 1 3.1009 -6.0919 0.8919 34 1 4.2091 -9.1916 -1.0028 35 1 4.4455 -8.3913 0.6096 36 1 3.3372 -10.2553 1.7898 37 1 3.4358 -12.4381 0.2817 38 1 4.3909 -11.4384 -0.8393 39 1 4.6002 -13.1170 2.6992 40 1 7.0876 -13.0156 3.5169 41 1 6.8537 -10.7158 -0.0329 42 1 1.1716 -10.2814 0.6193 43 1 1.9747 -10.4807 -0.9963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890574776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:54 Heat of formation + Delta-G solvation = -9.681056 kcal Electronic energy + Delta-G solvation = -21726.504315 eV Core-core repulsion = 18352.928552 eV Total energy + Delta-G solvation = -3373.575763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.92246 -40.57409 -38.20840 -34.86111 -34.60734 -32.60337 -31.47007 -30.12847 -29.22361 -26.97078 -26.35241 -25.10952 -22.39364 -21.97575 -21.19365 -20.47585 -19.96123 -18.96246 -17.86865 -16.91167 -16.37425 -16.15147 -16.03229 -15.69910 -15.33537 -14.91924 -14.42688 -14.24796 -13.87540 -13.47047 -13.17843 -13.06535 -12.83084 -12.61306 -12.38093 -12.21358 -11.96090 -11.74028 -11.58775 -11.55898 -10.96570 -10.76300 -10.51582 -10.48512 -10.38245 -10.08261 -9.73133 -9.58787 -9.20095 -8.96559 -8.94668 -8.79099 -8.28529 -5.93266 -3.95697 1.39653 2.18908 2.66155 2.78086 2.81377 3.35299 3.41169 3.44520 3.84782 4.29777 4.43561 4.47777 4.51780 4.64583 4.71459 4.83800 4.98278 5.10487 5.15057 5.21152 5.32910 5.34437 5.36569 5.40633 5.41697 5.43167 5.64051 5.67237 5.80191 5.90475 5.93160 6.12310 6.16574 6.33855 6.57142 6.73948 6.86467 7.04113 7.22607 7.64430 7.76350 7.92509 8.08269 8.23086 8.50056 9.11954 9.67673 11.18059 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.002174 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.143789 B =12877.676627 C =13797.285110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.130 4.130 13 C 0.541 3.459 14 O -0.534 6.534 15 N -0.654 5.654 16 C 0.103 3.897 17 C -0.119 4.119 18 C -0.038 4.038 19 C -0.177 4.177 20 C -0.210 4.210 21 C -0.043 4.043 22 O -0.178 6.178 23 C -0.038 4.038 24 C 0.105 3.895 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.200 0.800 41 H 0.201 0.799 42 H 0.077 0.923 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.898 -29.774 1.938 32.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.332 3.668 14 O -0.409 6.409 15 N -0.392 5.392 16 C -0.020 4.020 17 C -0.138 4.138 18 C -0.076 4.076 19 C -0.179 4.179 20 C -0.229 4.229 21 C -0.110 4.110 22 O -0.074 6.074 23 C -0.106 4.106 24 C -0.018 4.018 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.217 0.783 41 H 0.218 0.782 42 H 0.095 0.905 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.243 -29.335 1.962 32.245 hybrid contribution 0.285 0.857 0.000 0.904 sum 13.527 -28.477 1.962 31.588 Atomic orbital electron populations 1.69979 1.06038 1.26482 1.50955 1.25055 0.94857 0.99242 0.95503 0.86602 0.79811 0.83586 0.78030 1.20717 1.21261 1.19934 1.21282 0.92969 0.91188 1.50348 0.92763 1.19101 0.94070 0.91261 0.97339 1.21645 0.99071 0.93942 1.00058 1.21475 0.97035 0.92690 1.02984 1.21733 1.00004 0.91439 1.03849 1.20751 0.87649 0.83753 0.74597 1.90716 1.14049 1.86713 1.49456 1.49714 1.09214 1.05284 1.74966 1.23163 0.84359 0.94056 1.00422 1.23078 0.95653 0.93995 1.01039 1.19876 0.92758 0.97262 0.97705 1.20394 0.95771 1.02973 0.98735 1.21771 0.97676 1.04982 0.98465 1.24038 0.91609 0.98682 0.96685 1.84083 1.39191 1.52951 1.31146 1.23909 0.88985 1.03408 0.94307 1.22978 0.97898 0.80505 1.00439 0.93060 0.96579 0.96559 0.93479 0.93483 0.91773 0.91792 0.89296 0.89279 0.89725 0.90251 0.87615 0.90091 0.90415 0.83522 0.78286 0.78241 0.90500 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.95 4.50 -26.73 -0.12 -2.07 16 12 C -0.13 -1.89 5.53 -27.89 -0.15 -2.05 16 13 C 0.54 8.40 8.08 -10.99 -0.09 8.31 16 14 O -0.53 -10.60 16.76 5.55 0.09 -10.51 16 15 N -0.65 -7.50 3.69 -185.06 -0.68 -8.19 16 16 C 0.10 0.75 8.00 -8.38 -0.07 0.68 16 17 C -0.12 -0.75 4.01 -89.96 -0.36 -1.11 16 18 C -0.04 -0.18 5.64 -27.88 -0.16 -0.34 16 19 C -0.18 -1.10 5.40 -104.74 -0.57 -1.66 16 20 C -0.21 -1.31 10.87 -39.70 -0.43 -1.74 16 21 C -0.04 -0.25 12.09 29.42 0.36 0.10 16 22 O -0.18 -1.34 10.65 5.71 0.06 -1.27 16 23 C -0.04 -0.23 12.01 29.42 0.35 0.12 16 24 C 0.10 0.90 8.19 -8.50 -0.07 0.83 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.29 7.80 -51.93 -0.40 -0.12 16 39 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.20 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.20 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -36.27 365.84 -8.41 -44.68 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -7.11 Total: -5.24 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.99 Total: -15.00 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.05 Total: -35.28 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.15 Total: -11.79 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.27 -8.41 -44.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890574776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.996 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds