Wall clock time and date at job start Tue Mar 31 2020 09:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99909 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00395 * 180.02562 * 13 12 11 16 16 C 1.47068 * 136.05487 * 359.63118 * 15 13 12 17 17 C 1.53750 * 87.88568 * 152.96213 * 16 15 13 18 18 C 1.53003 * 114.08325 * 139.78085 * 17 16 15 19 19 C 1.50701 * 109.47220 * 91.56203 * 18 17 16 20 20 C 1.41383 * 126.57822 * 89.99961 * 19 18 17 21 21 C 1.34512 * 106.83952 * 179.97438 * 20 19 18 22 22 O 1.34302 * 108.41931 * 359.97438 * 21 20 19 23 23 C 1.34304 * 109.48036 * 359.77892 * 22 21 20 24 24 C 1.47057 * 136.05723 * 180.02562 * 15 13 12 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 33 33 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 34 34 H 1.08998 * 113.46590 * 267.69914 * 16 15 13 35 35 H 1.09004 * 113.46698 * 38.13371 * 16 15 13 36 36 H 1.09004 * 114.39875 * 272.67621 * 17 16 15 37 37 H 1.09005 * 109.46744 * 211.55998 * 18 17 16 38 38 H 1.08999 * 109.47172 * 331.55839 * 18 17 16 39 39 H 1.08004 * 126.57836 * 359.92149 * 20 19 18 40 40 H 1.07999 * 125.78978 * 179.97438 * 21 20 19 41 41 H 1.07994 * 125.79248 * 180.23405 * 23 22 21 42 42 H 1.09001 * 113.47200 * 321.86010 * 24 15 13 43 43 H 1.09003 * 113.47165 * 92.24742 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1501 0.0018 13 6 1.7208 -7.4552 0.0018 14 8 0.5080 -7.4552 0.0009 15 7 2.3946 -8.6225 0.0029 16 6 3.8079 -9.0293 -0.0024 17 6 3.3782 -10.3262 0.7028 18 6 4.1011 -11.5782 0.2021 19 6 5.3318 -11.8161 1.0386 20 6 5.4107 -12.5868 2.2213 21 6 6.6886 -12.5319 2.6376 22 8 7.3839 -11.7736 1.7744 23 6 6.5674 -11.3411 0.7998 24 6 2.0402 -10.0497 0.0028 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.8537 -5.0446 0.8914 31 1 0.8531 -5.0451 -0.8886 32 1 3.1010 -6.0928 -0.8881 33 1 3.1009 -6.0919 0.8919 34 1 4.2091 -9.1916 -1.0028 35 1 4.4455 -8.3913 0.6096 36 1 3.3372 -10.2553 1.7898 37 1 3.4358 -12.4381 0.2817 38 1 4.3909 -11.4384 -0.8393 39 1 4.6002 -13.1170 2.6992 40 1 7.0876 -13.0156 3.5169 41 1 6.8537 -10.7158 -0.0329 42 1 1.1716 -10.2814 0.6193 43 1 1.9747 -10.4807 -0.9963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890574776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:50 Heat of formation + Delta-G solvation = -31.911971 kcal Electronic energy + Delta-G solvation = -21727.468320 eV Core-core repulsion = 18352.928552 eV Total energy + Delta-G solvation = -3374.539768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.34560 -41.42754 -39.28181 -36.63416 -35.12714 -34.61660 -32.28832 -31.40429 -30.10959 -28.02814 -27.04214 -26.58380 -24.00565 -22.43162 -22.06761 -21.64331 -20.93052 -19.86691 -18.43773 -18.30655 -17.90280 -17.12643 -16.80972 -16.72344 -16.43147 -16.22954 -15.57069 -15.17576 -14.70702 -14.58064 -14.35646 -13.87571 -13.69784 -13.57318 -13.54110 -13.40761 -13.26778 -12.89272 -12.82714 -12.59540 -12.34533 -12.21943 -12.17549 -12.11305 -11.41374 -11.40319 -11.31424 -11.16493 -10.81486 -10.55663 -10.43361 -9.73610 -9.31133 -8.19093 -6.31463 0.98570 1.39990 1.42629 1.53709 1.57319 1.72918 1.91019 2.41647 2.44161 3.13364 3.27335 3.53893 3.90263 3.98796 4.04339 4.10431 4.12235 4.26023 4.36421 4.46474 4.50846 4.58138 4.62473 4.64565 4.67151 4.78139 4.80808 4.84859 4.92068 5.00921 5.03499 5.15170 5.25845 5.31783 5.34198 5.40565 5.44836 5.54919 5.73610 5.76020 5.86645 6.24335 6.32660 6.69859 6.86669 7.11990 7.37986 8.93204 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.002174 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.143789 B =12877.676627 C =13797.285110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.119 4.119 13 C 0.534 3.466 14 O -0.595 6.595 15 N -0.659 5.659 16 C 0.102 3.898 17 C -0.098 4.098 18 C -0.029 4.029 19 C -0.189 4.189 20 C -0.228 4.228 21 C -0.052 4.052 22 O -0.197 6.197 23 C -0.046 4.046 24 C 0.096 3.904 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.016 1.016 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.155 0.845 40 H 0.224 0.776 41 H 0.225 0.775 42 H 0.061 0.939 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.043 -30.481 1.491 34.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.158 4.158 13 C 0.326 3.674 14 O -0.476 6.476 15 N -0.393 5.393 16 C -0.019 4.019 17 C -0.117 4.117 18 C -0.067 4.067 19 C -0.190 4.190 20 C -0.247 4.247 21 C -0.119 4.119 22 O -0.093 6.093 23 C -0.113 4.113 24 C -0.026 4.026 25 H 0.072 0.928 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.172 0.828 40 H 0.240 0.760 41 H 0.242 0.758 42 H 0.080 0.920 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.451 -30.099 1.517 34.335 hybrid contribution -0.705 0.970 0.161 1.210 sum 15.746 -29.129 1.678 33.155 Atomic orbital electron populations 1.70139 1.08087 1.27765 1.51836 1.26129 0.95827 1.03836 0.94787 0.85351 0.78634 0.77916 0.78550 1.19638 1.20937 1.18297 1.21740 0.93743 0.92139 1.50282 0.91527 1.19062 0.94691 0.93819 0.94335 1.21437 0.97811 0.92564 1.01345 1.21259 0.97460 0.93678 1.00994 1.21578 0.98833 0.89208 1.06214 1.20819 0.86988 0.85197 0.74434 1.90688 1.16474 1.87721 1.52682 1.49790 1.11588 1.05287 1.72675 1.23527 0.82076 0.93981 1.02361 1.22871 0.94008 0.94631 1.00204 1.19839 0.92113 0.96372 0.98370 1.20596 0.96330 1.03183 0.98935 1.22060 0.98211 1.05458 0.98952 1.24590 0.91710 0.98409 0.97165 1.84081 1.40038 1.53424 1.31784 1.24468 0.88901 1.03412 0.94565 1.23270 0.98687 0.78881 1.01747 0.92847 0.99672 0.99745 0.92109 0.91937 0.93991 0.93826 0.86616 0.86961 0.86828 0.89312 0.88667 0.89520 0.88513 0.82752 0.75971 0.75833 0.92022 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.73 13.29 21.45 0.28 -59.44 16 2 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.09 -3.97 5.15 30.60 0.16 -3.81 16 11 C -0.10 -3.66 4.50 30.60 0.14 -3.53 16 12 C -0.12 -3.27 5.53 29.85 0.16 -3.10 16 13 C 0.53 16.36 8.08 87.66 0.71 17.06 16 14 O -0.59 -24.55 16.76 -3.04 -0.05 -24.60 16 15 N -0.66 -13.97 3.69 -857.79 -3.16 -17.13 16 16 C 0.10 1.13 8.00 83.26 0.67 1.79 16 17 C -0.10 -1.00 4.01 -10.37 -0.04 -1.04 16 18 C -0.03 -0.19 5.64 29.85 0.17 -0.02 16 19 C -0.19 -1.89 5.40 -19.94 -0.11 -2.00 16 20 C -0.23 -2.49 10.87 22.19 0.24 -2.25 16 21 C -0.05 -0.54 12.09 66.97 0.81 0.27 16 22 O -0.20 -2.63 10.65 -2.49 -0.03 -2.66 16 23 C -0.05 -0.45 12.01 66.97 0.80 0.35 16 24 C 0.10 1.50 8.19 83.19 0.68 2.18 16 25 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 0.69 7.87 -2.39 -0.02 0.67 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.10 1.22 8.12 -2.38 -0.02 1.20 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.31 7.80 -2.39 -0.02 0.29 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.22 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.23 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.21 8.11 -2.39 -0.02 1.19 16 Total: -1.00 -82.09 365.84 5.27 -76.81 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.97 Total: 4.33 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 5.23 Total: -24.58 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.88 Total: -76.57 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.08 Total: -27.26 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -82.09 5.27 -76.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890574776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.901 kcal (2) G-P(sol) polarization free energy of solvation -82.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds