Wall clock time and date at job start Tue Mar 31 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00164 * 3 2 1 6 6 H 1.48496 * 109.47397 * 60.00000 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99781 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99622 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 14 12 17 17 C 1.38234 * 119.99770 * 269.72527 * 16 15 14 18 18 C 1.38239 * 119.99901 * 179.76875 * 17 16 15 19 19 C 1.38238 * 119.99492 * 0.48004 * 18 17 16 20 20 C 1.50706 * 119.99437 * 179.77082 * 19 18 17 21 21 C 1.53005 * 109.47127 * 270.02394 * 20 19 18 22 22 O 1.42895 * 109.46889 * 180.02562 * 21 20 19 23 23 C 1.38225 * 120.00505 * 359.79428 * 19 18 17 24 24 C 1.38232 * 119.99860 * 89.99969 * 16 15 14 25 25 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 27 27 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 28 28 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 29 29 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 30 30 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 31 31 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 32 32 H 0.96996 * 120.00772 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 34 34 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 35 35 H 1.08001 * 120.00330 * 359.97438 * 17 16 15 36 36 H 1.07993 * 120.00120 * 180.25541 * 18 17 16 37 37 H 1.09002 * 109.47512 * 30.02407 * 20 19 18 38 38 H 1.09001 * 109.46797 * 150.02415 * 20 19 18 39 39 H 1.09002 * 109.46935 * 300.00366 * 21 20 19 40 40 H 1.09001 * 109.46812 * 60.00025 * 21 20 19 41 41 H 0.96704 * 114.00007 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00220 * 179.97438 * 23 19 18 43 43 H 1.07998 * 120.00407 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9108 -0.0019 14 7 2.0104 -7.4031 -0.0006 15 6 2.9625 -8.5167 -0.0018 16 6 2.2090 -9.8218 -0.0011 17 6 1.8698 -10.4233 1.1964 18 6 1.1744 -11.6181 1.1972 19 6 0.8270 -12.2162 0.0003 20 6 0.0735 -13.5214 0.0012 21 6 1.0677 -14.6844 -0.0001 22 8 0.3532 -15.9218 0.0001 23 6 1.1712 -11.6176 -1.1971 24 6 1.8621 -10.4202 -1.1979 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5570 0.8897 28 1 2.8720 -3.6042 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0450 -0.8896 31 1 0.8540 -5.0446 0.8903 32 1 1.0568 -7.5805 0.0001 33 1 3.5884 -8.4586 -0.8923 34 1 3.5899 -8.4592 0.8877 35 1 2.1451 -9.9582 2.1315 36 1 0.9058 -12.0859 2.1327 37 1 -0.5522 -13.5792 0.8919 38 1 -0.5542 -13.5790 -0.8881 39 1 1.6934 -14.6265 -0.8908 40 1 1.6954 -14.6266 0.8892 41 1 0.9216 -16.7042 -0.0010 42 1 0.9001 -12.0852 -2.1321 43 1 2.1313 -9.9528 -2.1334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890638591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:34 Heat of formation + Delta-G solvation = -118.809585 kcal Electronic energy + Delta-G solvation = -21331.635776 eV Core-core repulsion = 17953.327845 eV Total energy + Delta-G solvation = -3378.307931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 6.31 seconds Orbital eigenvalues (eV) -41.01004 -40.25751 -37.93524 -36.38136 -35.95576 -34.11343 -33.80721 -31.89102 -30.75256 -29.45512 -26.90192 -25.41190 -23.69773 -23.63214 -22.28177 -21.59144 -21.18325 -18.69911 -18.47869 -17.92943 -17.19655 -17.06388 -16.60097 -16.49978 -16.22339 -15.84224 -15.70500 -15.19591 -15.06462 -14.78090 -14.33590 -14.23380 -13.83438 -13.75640 -13.58242 -13.38271 -13.07069 -12.79511 -12.60930 -12.51693 -12.38353 -12.23410 -12.04631 -11.90318 -11.55121 -11.47088 -11.25400 -10.90129 -10.84674 -10.54324 -10.12846 -9.86699 -9.62556 -8.20008 -6.29909 0.19592 0.45525 1.39725 1.39989 1.53942 1.65625 2.22820 2.42383 2.83458 3.12924 3.33508 3.66660 3.81993 3.93992 4.07279 4.08821 4.14786 4.24502 4.27538 4.34891 4.37794 4.50985 4.55746 4.66897 4.70018 4.84547 4.92972 4.97489 4.98163 5.11776 5.12899 5.15313 5.19862 5.39962 5.42972 5.55368 5.62125 5.65417 5.76167 5.87538 6.02075 6.27962 6.54744 6.85789 6.86622 7.26170 7.38811 8.91650 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.049245 B = 0.001903 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.448001 B =14713.059440 C =14950.511116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.024 3.976 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.517 3.483 13 O -0.584 6.584 14 N -0.715 5.715 15 C 0.162 3.838 16 C -0.112 4.112 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.078 4.078 20 C -0.080 4.080 21 C 0.082 3.918 22 O -0.596 6.596 23 C -0.119 4.119 24 C -0.103 4.103 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.399 0.601 42 H 0.139 0.861 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -32.803 0.004 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.013 4.013 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.305 3.695 13 O -0.464 6.464 14 N -0.368 5.368 15 C 0.039 3.961 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.137 4.137 19 C -0.079 4.079 20 C -0.118 4.118 21 C 0.004 3.996 22 O -0.405 6.405 23 C -0.137 4.137 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.251 0.749 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.249 0.751 42 H 0.157 0.843 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.467 -32.153 0.003 32.156 hybrid contribution 0.441 0.689 0.000 0.818 sum 0.908 -31.464 0.004 31.477 Atomic orbital electron populations 1.70076 1.07486 1.27702 1.51666 1.25914 0.95840 1.03086 0.94703 0.85434 0.78876 0.78959 0.77994 1.19233 1.20079 1.20068 1.21729 0.93363 0.92823 1.50604 0.93051 1.19041 0.94250 0.92427 0.95581 1.21163 0.97622 0.92972 1.00314 1.21682 0.97931 0.91674 1.05732 1.21056 0.89365 0.84705 0.74371 1.90667 1.19002 1.85470 1.51285 1.46000 1.11116 1.04388 1.75299 1.20144 0.90934 0.82500 1.02514 1.19786 1.01142 0.96065 0.94261 1.21244 0.97566 0.95583 0.97764 1.21263 0.98534 0.95517 0.98416 1.19874 0.98280 0.96318 0.93407 1.20469 0.97349 0.89715 1.04235 1.22133 0.93430 0.83330 1.00700 1.86404 1.39461 1.16818 1.97795 1.21261 0.98585 0.95479 0.98408 1.21244 0.97566 0.95569 0.97776 0.92685 0.98014 0.98026 0.94083 0.94077 0.87416 0.87410 0.74914 0.91383 0.91388 0.85058 0.84317 0.90197 0.90202 0.92858 0.92849 0.75107 0.84319 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.55 -32.47 9.11 25.60 0.23 -32.24 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.08 -3.67 4.44 30.60 0.14 -3.53 16 11 C -0.13 -4.25 5.70 29.85 0.17 -4.08 16 12 C 0.52 16.35 7.83 87.66 0.69 17.03 16 13 O -0.58 -23.73 15.98 -3.03 -0.05 -23.78 16 14 N -0.72 -16.08 5.55 -466.78 -2.59 -18.67 16 15 C 0.16 3.32 5.80 85.63 0.50 3.82 16 16 C -0.11 -1.82 5.25 -19.87 -0.10 -1.92 16 17 C -0.10 -1.51 9.70 22.27 0.22 -1.29 16 18 C -0.12 -1.52 9.70 22.27 0.22 -1.31 16 19 C -0.08 -0.98 5.13 -19.87 -0.10 -1.08 16 20 C -0.08 -0.88 5.71 29.85 0.17 -0.71 16 21 C 0.08 0.78 7.03 71.98 0.51 1.29 16 22 O -0.60 -6.61 13.66 -148.98 -2.03 -8.65 16 23 C -0.12 -1.52 9.70 22.27 0.22 -1.31 16 24 C -0.10 -1.51 9.70 22.27 0.22 -1.29 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 29 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.41 7.16 8.46 -92.71 -0.78 6.37 16 33 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 34 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 35 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 38 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 39 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.40 0.90 9.12 -74.05 -0.68 0.22 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.28 367.84 0.85 -74.43 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -0.46 Total: 10.10 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.67 Total: -24.58 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.30 Total: -75.03 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -2.08 Total: -32.43 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.28 0.85 -74.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890638591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.380 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.31 seconds