Wall clock time and date at job start Tue Mar 31 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 H 1.08997 * 109.47253 * 305.64511 * 3 2 1 5 5 C 1.50708 * 109.47044 * 185.64784 * 3 2 1 6 6 H 1.08004 * 119.99578 * 239.99743 * 5 3 2 7 7 C 1.37874 * 119.99923 * 60.00080 * 5 3 2 8 8 N 1.31513 * 120.00200 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46893 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47045 * 119.99793 * 9 7 5 12 12 H 1.48495 * 109.47175 * 240.00122 * 9 7 5 13 13 N 1.46899 * 109.47407 * 65.64952 * 3 2 1 14 14 C 1.46893 * 111.00105 * 205.77052 * 13 3 2 15 15 C 1.53790 * 113.61151 * 203.14346 * 14 13 3 16 16 C 1.53779 * 87.07736 * 220.01702 * 15 14 13 17 17 S 1.81409 * 113.61245 * 139.98497 * 16 15 14 18 18 C 1.76197 * 102.99906 * 176.52941 * 17 16 15 19 19 C 1.38977 * 120.07959 * 359.71861 * 18 17 16 20 20 C 1.38085 * 119.91318 * 179.77090 * 19 18 17 21 21 C 1.38299 * 120.08337 * 0.51057 * 20 19 18 22 22 C 1.38301 * 120.16125 * 359.74189 * 21 20 19 23 23 C 1.38085 * 120.07846 * 0.02562 * 22 21 20 24 24 C 1.53779 * 87.17589 * 25.39331 * 16 15 14 25 25 H 1.09004 * 109.47039 * 294.31696 * 1 2 3 26 26 H 1.08997 * 109.47316 * 54.31688 * 1 2 3 27 27 H 1.08996 * 109.46952 * 174.32172 * 1 2 3 28 28 H 1.09001 * 109.47294 * 240.00467 * 2 1 3 29 29 H 1.09002 * 109.47435 * 119.99995 * 2 1 3 30 30 H 0.96994 * 120.00316 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99829 * 329.72578 * 13 3 2 32 32 H 1.09002 * 112.85047 * 334.33173 * 14 13 3 33 33 H 1.09002 * 113.61519 * 105.46813 * 15 14 13 34 34 H 1.08995 * 113.69244 * 334.57513 * 15 14 13 35 35 H 1.08998 * 113.61487 * 270.79786 * 16 15 14 36 36 H 1.07996 * 120.04289 * 0.02562 * 19 18 17 37 37 H 1.08006 * 119.95334 * 180.22762 * 20 19 18 38 38 H 1.08005 * 119.91803 * 179.71753 * 21 20 19 39 39 H 1.07999 * 119.95760 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.03445 * 179.97438 * 23 22 21 41 41 H 1.08993 * 113.61918 * 89.15915 * 24 16 15 42 42 H 1.09004 * 113.60985 * 220.06392 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5406 1.4448 -0.1398 6 1 4.1541 1.8865 0.6315 7 6 4.1301 0.8831 -1.2524 8 7 3.3830 0.3458 -2.1919 9 14 5.9900 0.8866 -1.4261 10 1 6.5964 1.5482 -0.2429 11 1 6.4812 -0.5118 -1.5178 12 1 6.3709 1.6267 -2.6558 13 7 1.6649 2.0946 1.2617 14 6 1.5664 3.5505 1.0930 15 6 1.7393 4.3356 2.4040 16 6 0.6129 5.2577 1.9084 17 16 -0.5468 5.7537 3.2122 18 6 -1.6324 6.8618 2.3766 19 6 -1.4400 7.1415 1.0290 20 6 -2.2957 8.0068 0.3763 21 6 -3.3366 8.6029 1.0646 22 6 -3.5279 8.3309 2.4071 23 6 -2.6791 7.4630 3.0651 24 6 0.1185 4.0726 1.0623 25 1 -0.3633 0.4232 0.9365 26 1 -0.3634 0.5994 -0.8347 27 1 -0.3633 -1.0226 -0.1017 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7977 -0.0491 -2.9748 31 1 0.8035 1.7134 1.6236 32 1 2.1830 3.9245 0.2756 33 1 2.7051 4.8337 2.4906 34 1 1.4762 3.7647 3.2944 35 1 0.9677 6.1002 1.3147 36 1 -0.6249 6.6796 0.4918 37 1 -2.1490 8.2218 -0.6719 38 1 -4.0015 9.2828 0.5526 39 1 -4.3421 8.7979 2.9413 40 1 -2.8289 7.2514 4.1136 41 1 -0.5891 3.4285 1.5843 42 1 -0.2224 4.3587 0.0673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893605501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:27 Heat of formation + Delta-G solvation = 25.197716 kcal Electronic energy + Delta-G solvation = -20414.950845 eV Core-core repulsion = 17485.640410 eV Total energy + Delta-G solvation = -2929.310435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -40.14959 -39.77374 -37.11442 -33.97768 -32.17318 -31.87694 -31.70811 -28.49903 -26.72779 -25.62175 -24.34231 -23.63290 -23.21145 -21.56965 -20.58135 -18.64405 -18.31480 -17.67652 -16.82761 -16.63136 -16.35634 -15.84556 -15.56077 -15.30209 -14.83633 -14.45194 -14.40851 -14.08567 -13.98762 -13.82680 -13.45429 -13.27660 -13.14135 -12.85588 -12.68342 -12.52248 -12.34955 -12.11515 -11.98764 -11.94137 -11.58518 -11.51117 -11.24460 -11.00430 -10.90917 -10.64853 -10.42387 -9.94304 -8.94677 -8.36542 -8.05256 -6.17298 0.26294 0.41220 0.57684 1.40154 1.42179 1.43069 1.54322 2.44753 2.77147 3.19676 3.37102 3.49609 3.71325 3.83313 3.94028 4.02847 4.12192 4.24436 4.48148 4.51032 4.55254 4.57581 4.57842 4.71860 4.72790 4.74827 4.80486 4.97611 4.99995 5.06358 5.14234 5.23244 5.29769 5.33073 5.38637 5.45546 5.56253 5.63177 5.77737 5.92334 5.99070 6.39046 6.54547 6.97629 7.01925 7.52164 8.97487 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.003260 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.780576 B = 8585.848219 C = 8711.759461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.028 1.028 5 C -0.509 4.509 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.675 5.675 14 C 0.079 3.921 15 C -0.091 4.091 16 C -0.086 4.086 17 S -0.123 6.123 18 C -0.097 4.097 19 C -0.149 4.149 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.144 4.144 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.259 0.741 31 H 0.331 0.669 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.093 0.907 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 14.674 7.743 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.119 3.881 4 H -0.011 1.011 5 C -0.548 4.548 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.305 5.305 14 C -0.034 4.034 15 C -0.131 4.131 16 C -0.215 4.215 17 S 0.124 5.876 18 C -0.210 4.210 19 C -0.172 4.172 20 C -0.130 4.130 21 C -0.150 4.150 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.185 4.185 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.151 0.849 41 H 0.111 0.889 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.547 14.162 9.014 20.958 hybrid contribution 0.397 0.216 -2.287 2.332 sum -12.150 14.378 6.727 19.990 Atomic orbital electron populations 1.21740 0.96322 1.01043 1.00467 1.21613 0.94177 0.99211 1.01157 1.18920 0.93844 0.90500 0.84825 1.01058 1.21535 0.92954 1.36326 1.04009 0.93210 1.25658 1.02059 0.95439 0.95691 1.70003 1.36054 1.40079 1.09862 0.85582 0.81097 0.77618 0.77765 1.19522 1.20763 1.20828 1.60476 1.37151 1.02517 1.30386 1.22822 0.94735 0.88720 0.97151 1.22869 0.96567 0.95238 0.98461 1.24719 0.98390 0.99831 0.98558 1.85356 1.30653 1.52746 1.18806 1.21958 1.00269 1.01491 0.97245 1.21383 1.01391 1.00992 0.93482 1.21387 0.94785 0.95968 1.00819 1.21548 0.98259 1.00393 0.94831 1.21443 0.98980 0.96839 0.95023 1.21025 0.94563 0.98155 1.00419 1.23965 0.98345 0.96558 0.99655 0.92402 0.94492 0.92580 0.91475 0.94559 0.93154 0.84952 0.90466 0.90129 0.89045 0.86783 0.86179 0.84179 0.83207 0.82886 0.84881 0.88890 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.65 71.98 0.69 -4.44 16 2 C -0.12 -5.75 5.36 30.60 0.16 -5.58 16 3 C 0.23 11.17 1.89 44.17 0.08 11.26 16 4 H -0.03 -1.54 7.83 -2.39 -0.02 -1.56 16 5 C -0.51 -28.09 8.69 25.60 0.22 -27.86 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.53 5.29 84.65 0.45 0.97 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.67 -27.46 6.41 -470.30 -3.01 -30.47 16 14 C 0.08 2.77 3.89 45.51 0.18 2.95 16 15 C -0.09 -2.67 7.47 31.12 0.23 -2.44 16 16 C -0.09 -2.24 2.98 31.12 0.09 -2.15 16 17 S -0.12 -3.09 21.72 -56.49 -1.23 -4.32 16 18 C -0.10 -2.33 6.11 22.62 0.14 -2.19 16 19 C -0.15 -3.43 9.33 22.41 0.21 -3.22 16 20 C -0.11 -2.08 10.04 22.25 0.22 -1.85 16 21 C -0.13 -2.05 10.04 22.30 0.22 -1.83 16 22 C -0.10 -1.66 10.04 22.25 0.22 -1.44 16 23 C -0.12 -2.40 9.79 22.41 0.22 -2.18 16 24 C -0.14 -4.17 7.14 31.18 0.22 -3.95 16 25 H 0.06 1.87 6.65 -2.39 -0.02 1.86 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.33 12.15 6.08 -89.69 -0.55 11.61 16 32 H 0.08 3.10 7.84 -2.39 -0.02 3.09 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 35 H 0.11 2.83 6.95 -2.39 -0.02 2.81 16 36 H 0.12 2.80 5.59 -2.91 -0.02 2.79 16 37 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.09 2.66 7.79 -2.39 -0.02 2.64 16 42 H 0.07 1.94 8.12 -2.38 -0.02 1.92 16 Total: -1.00 -60.78 349.80 2.05 -58.73 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.45 Total: 26.28 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.57 Total: -43.95 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.77 Total: -82.83 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.23 Total: -4.32 kcal Total: -60.78 2.05 -58.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.926 kcal (2) G-P(sol) polarization free energy of solvation -60.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.59 seconds