Wall clock time and date at job start Tue Mar 31 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 H 1.08999 * 109.46901 * 54.53849 * 3 2 1 5 5 C 1.50700 * 109.46914 * 174.54047 * 3 2 1 6 6 H 1.07997 * 119.99993 * 120.00089 * 5 3 2 7 7 C 1.37877 * 119.99787 * 300.00066 * 5 3 2 8 8 N 1.31521 * 119.99550 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00360 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46937 * 90.00228 * 9 7 5 11 11 H 1.48498 * 109.47305 * 210.00440 * 9 7 5 12 12 H 1.48505 * 109.47140 * 330.00303 * 9 7 5 13 13 N 1.46899 * 109.46748 * 294.54199 * 3 2 1 14 14 C 1.46900 * 110.99860 * 152.62194 * 13 3 2 15 15 C 1.53784 * 113.61516 * 156.44863 * 14 13 3 16 16 C 1.53771 * 87.07909 * 89.11447 * 15 14 13 17 17 S 1.81409 * 113.61407 * 139.98318 * 16 15 14 18 18 C 1.76192 * 103.00108 * 176.52748 * 17 16 15 19 19 C 1.38974 * 120.08107 * 179.97438 * 18 17 16 20 20 C 1.38085 * 119.92380 * 180.02562 * 19 18 17 21 21 C 1.38306 * 120.07704 * 0.02562 * 20 19 18 22 22 C 1.38299 * 120.15922 * 0.27587 * 21 20 19 23 23 C 1.38089 * 120.08348 * 359.44537 * 22 21 20 24 24 C 1.53778 * 87.17662 * 25.39274 * 16 15 14 25 25 H 1.09000 * 109.46922 * 61.74961 * 1 2 3 26 26 H 1.09001 * 109.47371 * 181.74988 * 1 2 3 27 27 H 1.09007 * 109.47267 * 301.74934 * 1 2 3 28 28 H 1.08994 * 109.46956 * 239.99612 * 2 1 3 29 29 H 1.09002 * 109.47085 * 120.00103 * 2 1 3 30 30 H 0.97003 * 119.99746 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00163 * 28.66525 * 13 3 2 32 32 H 1.09004 * 112.85019 * 25.25119 * 14 13 3 33 33 H 1.09002 * 113.61005 * 334.56272 * 15 14 13 34 34 H 1.08997 * 113.61238 * 203.66875 * 15 14 13 35 35 H 1.09005 * 113.61808 * 270.79472 * 16 15 14 36 36 H 1.08005 * 120.04022 * 0.04703 * 19 18 17 37 37 H 1.07999 * 119.96227 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.91946 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.96111 * 179.72688 * 22 21 20 40 40 H 1.07995 * 120.04274 * 180.27653 * 23 22 21 41 41 H 1.08998 * 113.61572 * 89.15542 * 24 16 15 42 42 H 1.09004 * 113.61310 * 220.06064 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8370 5 6 3.5410 1.4446 0.1352 6 1 4.1521 1.8871 -0.6375 7 6 4.1339 0.8816 1.2454 8 7 5.4438 0.8839 1.3635 9 14 3.0768 0.1169 2.5822 10 1 2.8572 -1.3200 2.2782 11 1 3.7647 0.2464 3.8919 12 1 1.7681 0.8165 2.6392 13 7 1.6609 2.0959 -1.2599 14 6 1.5258 3.5476 -1.0802 15 6 1.7015 4.3483 -2.3813 16 6 0.1882 4.1804 -2.5965 17 16 -0.6220 5.6658 -3.2506 18 6 -2.2875 5.1395 -3.4820 19 6 -3.2348 6.0252 -3.9816 20 6 -4.5393 5.6094 -4.1612 21 6 -4.9036 4.3134 -3.8441 22 6 -3.9650 3.4312 -3.3409 23 6 -2.6574 3.8382 -3.1640 24 6 0.0647 4.0326 -1.0708 25 1 -0.3633 0.4864 -0.9053 26 1 -0.3634 -1.0272 0.0314 27 1 -0.3634 0.5408 0.8739 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.8609 0.4881 2.1447 31 1 0.8124 1.6972 -1.6329 32 1 2.1200 3.9284 -0.2495 33 1 2.3083 3.8381 -3.1294 34 1 2.0077 5.3819 -2.2198 35 1 -0.0772 3.2770 -3.1457 36 1 -2.9510 7.0374 -4.2294 37 1 -5.2761 6.2973 -4.5490 38 1 -5.9247 3.9911 -3.9852 39 1 -4.2540 2.4212 -3.0902 40 1 -1.9239 3.1474 -2.7752 41 1 -0.0776 4.9797 -0.5504 42 1 -0.6482 3.2678 -0.7625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893605502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:48 Heat of formation + Delta-G solvation = 49.055682 kcal Electronic energy + Delta-G solvation = -20714.576083 eV Core-core repulsion = 17786.300207 eV Total energy + Delta-G solvation = -2928.275876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = -0.93 seconds Orbital eigenvalues (eV) -39.16054 -38.93482 -35.64467 -32.08170 -31.29343 -31.10917 -30.47507 -27.11895 -25.58256 -24.62205 -22.88250 -22.70697 -22.36535 -20.07542 -19.02589 -17.77456 -16.77445 -16.72265 -15.71628 -15.44548 -15.02887 -14.82006 -14.39935 -14.01257 -13.74314 -13.57175 -13.22698 -13.09004 -12.74946 -12.62083 -12.41051 -12.24239 -11.94269 -11.79451 -11.40023 -11.20329 -10.89453 -10.68901 -10.63231 -10.34826 -10.17383 -10.04446 -9.95869 -9.72687 -9.43650 -9.23918 -9.17197 -8.55435 -7.55853 -7.37140 -6.06542 -4.03835 1.05148 1.18184 1.55323 2.40546 3.22769 3.32984 3.35738 3.53776 4.37661 4.50209 4.58949 4.66568 4.74543 4.82914 4.89601 5.07038 5.17339 5.22000 5.33098 5.34242 5.55447 5.64702 5.75389 5.75726 5.78984 5.86733 5.89023 6.09165 6.11520 6.16978 6.19954 6.26710 6.30826 6.39190 6.40171 6.56193 6.62909 6.71442 6.76449 7.11610 7.67816 7.89313 8.17121 8.70593 9.06525 9.56108 11.06851 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.003717 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.668879 B = 7531.687095 C = 8320.469674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C 0.191 3.809 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.654 5.654 14 C 0.088 3.912 15 C -0.102 4.102 16 C -0.095 4.095 17 S -0.122 6.122 18 C -0.075 4.075 19 C -0.107 4.107 20 C -0.104 4.104 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.131 4.131 24 C -0.160 4.160 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.320 0.680 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.796 7.261 -8.859 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.176 4.176 3 C 0.083 3.917 4 H 0.022 0.978 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.284 5.284 14 C -0.026 4.026 15 C -0.142 4.142 16 C -0.223 4.223 17 S 0.126 5.874 18 C -0.188 4.188 19 C -0.131 4.131 20 C -0.124 4.124 21 C -0.153 4.153 22 C -0.121 4.121 23 C -0.155 4.155 24 C -0.201 4.201 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.346 8.322 -9.182 21.317 hybrid contribution -2.031 -1.758 1.455 3.055 sum -19.377 6.564 -7.727 21.869 Atomic orbital electron populations 1.21920 0.98253 1.00625 1.00615 1.22155 0.92888 1.00549 1.01974 1.19661 0.96963 0.89128 0.85981 0.97784 1.21039 0.89012 1.37484 1.05993 0.90003 1.24962 0.94747 0.95988 0.97744 1.69887 1.08816 1.45746 1.29409 0.86965 0.80722 0.79786 0.81378 1.20605 1.22454 1.19317 1.60355 1.36912 1.00474 1.30680 1.22506 0.93129 0.89832 0.97093 1.22946 0.90684 1.00799 0.99809 1.25129 1.00533 0.97366 0.99305 1.85426 1.00397 1.21263 1.80328 1.21846 0.97858 0.96812 1.02256 1.20782 0.92580 0.99097 1.00658 1.21066 0.95624 0.96194 0.99494 1.21150 0.99544 0.94004 1.00612 1.21090 0.92860 0.99687 0.98419 1.21279 0.97253 0.94905 1.02065 1.24092 1.00354 1.02710 0.92968 0.93396 0.93516 0.93522 0.91312 0.92647 0.92700 0.86111 0.88445 0.89372 0.89487 0.87337 0.85701 0.85766 0.86029 0.85830 0.85659 0.88965 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.72 37.16 0.36 -2.18 16 2 C -0.14 -2.83 5.00 -26.73 -0.13 -2.96 16 3 C 0.19 4.25 1.48 -68.86 -0.10 4.15 16 4 H 0.00 0.11 6.85 -51.93 -0.36 -0.25 16 5 C -0.50 -13.58 9.34 -34.44 -0.32 -13.91 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 8 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 9 Si 0.88 21.45 24.41 -169.99 -4.15 17.30 16 10 H -0.28 -6.63 6.83 56.52 0.39 -6.24 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.65 -12.28 6.37 -100.00 -0.64 -12.91 16 14 C 0.09 1.46 4.02 -66.81 -0.27 1.19 16 15 C -0.10 -1.47 7.47 -25.92 -0.19 -1.66 16 16 C -0.09 -1.23 2.73 -25.93 -0.07 -1.30 16 17 S -0.12 -1.55 21.72 -107.50 -2.33 -3.88 16 18 C -0.07 -0.92 6.11 -39.04 -0.24 -1.16 16 19 C -0.11 -1.16 9.79 -39.36 -0.39 -1.55 16 20 C -0.10 -0.97 10.04 -39.61 -0.40 -1.36 16 21 C -0.13 -1.21 10.04 -39.53 -0.40 -1.61 16 22 C -0.10 -1.02 10.04 -39.61 -0.40 -1.42 16 23 C -0.13 -1.54 9.33 -39.36 -0.37 -1.90 16 24 C -0.16 -2.18 7.02 -25.83 -0.18 -2.36 16 25 H 0.05 0.68 6.51 -51.93 -0.34 0.34 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.23 3.22 -51.93 -0.17 1.07 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.32 5.28 5.87 -39.29 -0.23 5.05 16 32 H 0.10 1.83 7.86 -51.93 -0.41 1.42 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.11 1.39 6.87 -51.93 -0.36 1.03 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.13 1.44 5.57 -52.49 -0.29 1.15 16 41 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -29.54 342.67 -10.77 -40.31 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.40 Total: 6.74 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -3.19 Total: -26.24 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.14 Total: -39.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.33 Total: -3.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.54 -10.77 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.364 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.93 seconds