Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 H 1.08999 * 109.46901 * 54.53849 * 3 2 1 5 5 C 1.50700 * 109.46914 * 174.54047 * 3 2 1 6 6 H 1.07997 * 119.99993 * 120.00089 * 5 3 2 7 7 C 1.37877 * 119.99787 * 300.00066 * 5 3 2 8 8 N 1.31521 * 119.99550 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00360 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46937 * 90.00228 * 9 7 5 11 11 H 1.48498 * 109.47305 * 210.00440 * 9 7 5 12 12 H 1.48505 * 109.47140 * 330.00303 * 9 7 5 13 13 N 1.46899 * 109.46748 * 294.54199 * 3 2 1 14 14 C 1.46900 * 110.99860 * 152.62194 * 13 3 2 15 15 C 1.53784 * 113.61516 * 156.44863 * 14 13 3 16 16 C 1.53771 * 87.07909 * 89.11447 * 15 14 13 17 17 S 1.81409 * 113.61407 * 139.98318 * 16 15 14 18 18 C 1.76192 * 103.00108 * 176.52748 * 17 16 15 19 19 C 1.38974 * 120.08107 * 179.97438 * 18 17 16 20 20 C 1.38085 * 119.92380 * 180.02562 * 19 18 17 21 21 C 1.38306 * 120.07704 * 0.02562 * 20 19 18 22 22 C 1.38299 * 120.15922 * 0.27587 * 21 20 19 23 23 C 1.38089 * 120.08348 * 359.44537 * 22 21 20 24 24 C 1.53778 * 87.17662 * 25.39274 * 16 15 14 25 25 H 1.09000 * 109.46922 * 61.74961 * 1 2 3 26 26 H 1.09001 * 109.47371 * 181.74988 * 1 2 3 27 27 H 1.09007 * 109.47267 * 301.74934 * 1 2 3 28 28 H 1.08994 * 109.46956 * 239.99612 * 2 1 3 29 29 H 1.09002 * 109.47085 * 120.00103 * 2 1 3 30 30 H 0.97003 * 119.99746 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00163 * 28.66525 * 13 3 2 32 32 H 1.09004 * 112.85019 * 25.25119 * 14 13 3 33 33 H 1.09002 * 113.61005 * 334.56272 * 15 14 13 34 34 H 1.08997 * 113.61238 * 203.66875 * 15 14 13 35 35 H 1.09005 * 113.61808 * 270.79472 * 16 15 14 36 36 H 1.08005 * 120.04022 * 0.04703 * 19 18 17 37 37 H 1.07999 * 119.96227 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.91946 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.96111 * 179.72688 * 22 21 20 40 40 H 1.07995 * 120.04274 * 180.27653 * 23 22 21 41 41 H 1.08998 * 113.61572 * 89.15542 * 24 16 15 42 42 H 1.09004 * 113.61310 * 220.06064 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8370 5 6 3.5410 1.4446 0.1352 6 1 4.1521 1.8871 -0.6375 7 6 4.1339 0.8816 1.2454 8 7 5.4438 0.8839 1.3635 9 14 3.0768 0.1169 2.5822 10 1 2.8572 -1.3200 2.2782 11 1 3.7647 0.2464 3.8919 12 1 1.7681 0.8165 2.6392 13 7 1.6609 2.0959 -1.2599 14 6 1.5258 3.5476 -1.0802 15 6 1.7015 4.3483 -2.3813 16 6 0.1882 4.1804 -2.5965 17 16 -0.6220 5.6658 -3.2506 18 6 -2.2875 5.1395 -3.4820 19 6 -3.2348 6.0252 -3.9816 20 6 -4.5393 5.6094 -4.1612 21 6 -4.9036 4.3134 -3.8441 22 6 -3.9650 3.4312 -3.3409 23 6 -2.6574 3.8382 -3.1640 24 6 0.0647 4.0326 -1.0708 25 1 -0.3633 0.4864 -0.9053 26 1 -0.3634 -1.0272 0.0314 27 1 -0.3634 0.5408 0.8739 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.8609 0.4881 2.1447 31 1 0.8124 1.6972 -1.6329 32 1 2.1200 3.9284 -0.2495 33 1 2.3083 3.8381 -3.1294 34 1 2.0077 5.3819 -2.2198 35 1 -0.0772 3.2770 -3.1457 36 1 -2.9510 7.0374 -4.2294 37 1 -5.2761 6.2973 -4.5490 38 1 -5.9247 3.9911 -3.9852 39 1 -4.2540 2.4212 -3.0902 40 1 -1.9239 3.1474 -2.7752 41 1 -0.0776 4.9797 -0.5504 42 1 -0.6482 3.2678 -0.7625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893605502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = 32.314420 kcal Electronic energy + Delta-G solvation = -20715.302038 eV Core-core repulsion = 17786.300207 eV Total energy + Delta-G solvation = -2929.001831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.38170 -39.76890 -37.26146 -34.18147 -32.19295 -31.87094 -31.75111 -28.96708 -26.74434 -25.88359 -24.30194 -23.63302 -23.29245 -21.80995 -20.27491 -18.80071 -18.62965 -17.81709 -16.94178 -16.70047 -16.31910 -15.88275 -15.64344 -15.47180 -14.87350 -14.79088 -14.44733 -14.19805 -14.07098 -13.89101 -13.71223 -13.48632 -13.46713 -13.02358 -12.70710 -12.47986 -12.24987 -12.12293 -11.97446 -11.87376 -11.59197 -11.39667 -11.21488 -11.17302 -10.97894 -10.68319 -10.62021 -9.92608 -9.06172 -8.36349 -8.26103 -6.27713 0.27809 0.42884 0.59347 1.28958 1.34380 1.43815 1.44196 2.32056 2.78717 3.06425 3.26665 3.40788 3.55313 3.87372 3.95660 4.00794 4.08515 4.25120 4.26952 4.33799 4.41381 4.52582 4.58134 4.60142 4.71799 4.80174 4.81496 4.85060 4.95238 5.04848 5.06186 5.08432 5.09745 5.12537 5.25095 5.34561 5.46798 5.47032 5.57833 5.72471 6.00445 6.09618 6.51193 6.79927 6.93994 7.36870 8.91362 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.003717 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.668879 B = 7531.687095 C = 8320.469674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.198 3.802 4 H -0.001 1.001 5 C -0.499 4.499 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.953 5.953 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.302 1.302 12 H -0.247 1.247 13 N -0.661 5.661 14 C 0.074 3.926 15 C -0.099 4.099 16 C -0.079 4.079 17 S -0.133 6.133 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.130 4.130 22 C -0.108 4.108 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.337 0.663 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 6.907 -9.183 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.089 3.911 4 H 0.017 0.983 5 C -0.537 4.537 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.594 5.594 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.230 1.230 12 H -0.171 1.171 13 N -0.293 5.293 14 C -0.039 4.039 15 C -0.139 4.139 16 C -0.208 4.208 17 S 0.114 5.886 18 C -0.208 4.208 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.170 4.170 24 C -0.183 4.183 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.565 7.975 -9.534 24.891 hybrid contribution -0.740 -1.552 1.423 2.232 sum -22.305 6.423 -8.111 24.588 Atomic orbital electron populations 1.21850 0.94342 1.02559 1.01874 1.22039 0.96366 0.98259 1.00952 1.19397 0.93437 0.90953 0.87287 0.98340 1.21337 0.91798 1.36098 1.04497 0.94881 1.25820 0.95875 0.96795 1.00468 1.70059 1.11053 1.47736 1.30527 0.85876 0.79537 0.79570 0.77547 1.19196 1.22986 1.17071 1.60157 1.38303 1.01635 1.29162 1.22497 0.95246 0.88792 0.97346 1.22871 0.92139 1.00637 0.98231 1.24869 0.99087 0.97925 0.98890 1.85403 1.01687 1.20782 1.80708 1.21927 0.97295 0.97625 1.03943 1.21014 0.93200 0.99367 1.00722 1.21429 0.95427 0.96896 0.98641 1.21549 1.00702 0.93692 0.99141 1.21396 0.92376 1.00881 0.98127 1.21390 0.98142 0.94717 1.02749 1.23940 0.97838 1.02960 0.93591 0.91306 0.91226 0.93196 0.91865 0.94227 0.92744 0.84264 0.91487 0.90408 0.88793 0.86891 0.85101 0.83078 0.83280 0.83952 0.85869 0.88431 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.72 71.98 0.70 -3.57 16 2 C -0.14 -5.43 5.00 30.60 0.15 -5.27 16 3 C 0.20 8.80 1.48 44.17 0.07 8.87 16 4 H 0.00 -0.04 6.85 -2.39 -0.02 -0.06 16 5 C -0.50 -28.34 9.34 25.60 0.24 -28.11 16 6 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 7 C 0.01 0.40 5.45 84.65 0.46 0.86 16 8 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 9 Si 0.95 44.60 24.41 68.60 1.67 46.28 16 10 H -0.27 -11.87 6.83 99.48 0.68 -11.20 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.25 -10.66 6.53 99.48 0.65 -10.01 16 13 N -0.66 -24.72 6.37 -470.30 -2.99 -27.72 16 14 C 0.07 2.50 4.02 45.50 0.18 2.68 16 15 C -0.10 -2.86 7.47 31.12 0.23 -2.63 16 16 C -0.08 -1.97 2.73 31.12 0.09 -1.88 16 17 S -0.13 -3.24 21.72 -56.49 -1.23 -4.46 16 18 C -0.10 -2.17 6.11 22.62 0.14 -2.03 16 19 C -0.12 -2.34 9.79 22.41 0.22 -2.12 16 20 C -0.10 -1.60 10.04 22.25 0.22 -1.38 16 21 C -0.13 -1.92 10.04 22.30 0.22 -1.69 16 22 C -0.11 -1.86 10.04 22.25 0.22 -1.64 16 23 C -0.15 -3.10 9.33 22.41 0.21 -2.89 16 24 C -0.14 -3.70 7.02 31.18 0.22 -3.48 16 25 H 0.07 1.68 6.51 -2.39 -0.02 1.66 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.04 1.68 3.22 -2.39 -0.01 1.67 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.34 10.54 5.87 -89.69 -0.53 10.01 16 32 H 0.07 2.64 7.86 -2.39 -0.02 2.62 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 2.57 8.10 -2.39 -0.02 2.55 16 35 H 0.11 2.73 6.87 -2.38 -0.02 2.71 16 36 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.12 2.56 5.57 -2.91 -0.02 2.54 16 41 H 0.10 2.47 8.10 -2.39 -0.02 2.45 16 42 H 0.08 1.89 8.05 -2.38 -0.02 1.87 16 Total: -1.00 -66.84 342.67 1.72 -65.12 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.39 Total: 24.94 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.58 Total: -44.30 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -2.69 Total: -87.58 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.28 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -1.23 Total: -4.46 kcal Total: -66.84 1.72 -65.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.435 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds