Wall clock time and date at job start Tue Mar 31 2020 07:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 102.99872 * 2 1 4 4 H 1.08999 * 109.47036 * 305.00401 * 3 2 1 5 5 C 1.53008 * 109.46789 * 65.00386 * 3 2 1 6 6 C 1.52998 * 109.46673 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47291 * 299.99682 * 6 5 3 8 8 C 1.53001 * 109.47360 * 60.00225 * 7 6 5 9 9 H 1.08999 * 109.46899 * 59.99692 * 8 7 6 10 10 N 1.46500 * 109.47556 * 180.02562 * 8 7 6 11 11 C 1.39684 * 119.99958 * 275.00305 * 10 8 7 12 12 C 1.39338 * 119.95123 * 359.71848 * 11 10 8 13 13 C 1.38475 * 120.42146 * 179.97438 * 12 11 10 14 14 C 1.37688 * 120.32934 * 359.97438 * 13 12 11 15 15 C 1.40749 * 119.89102 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20933 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99756 * 24.33008 * 16 15 14 18 18 C 1.39934 * 119.99975 * 204.33105 * 16 15 14 19 19 N 1.30827 * 119.99763 * 17.73188 * 18 16 15 20 20 Si 1.86800 * 119.99876 * 197.72993 * 18 16 15 21 21 H 1.48499 * 109.46935 * 59.99679 * 20 18 16 22 22 H 1.48497 * 109.47040 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47126 * 300.00091 * 20 18 16 24 24 C 1.38271 * 119.94935 * 179.45448 * 11 10 8 25 25 C 1.52998 * 109.47220 * 185.00096 * 3 2 1 26 26 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46840 * 299.99729 * 1 2 3 28 28 H 1.08994 * 109.47376 * 59.99456 * 1 2 3 29 29 H 1.08998 * 109.46999 * 299.99875 * 5 3 2 30 30 H 1.08999 * 109.47319 * 60.00189 * 5 3 2 31 31 H 1.09002 * 109.47545 * 59.99891 * 6 5 3 32 32 H 1.09008 * 109.46855 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47366 * 300.00203 * 7 6 5 34 34 H 1.08995 * 109.47534 * 180.02562 * 7 6 5 35 35 H 0.97003 * 119.99463 * 94.72453 * 10 8 7 36 36 H 1.08000 * 119.78410 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.83295 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.05345 * 179.97438 * 14 13 12 39 39 H 0.97000 * 119.99614 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.16864 * 359.96766 * 24 11 10 41 41 H 1.08998 * 109.46971 * 60.00171 * 25 3 2 42 42 H 1.09002 * 109.46997 * 300.00445 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4015 1.3075 6 6 2.0875 3.8922 1.3077 7 6 3.6025 4.0654 1.1823 8 6 4.0818 3.4314 -0.1251 9 1 3.5895 3.9183 -0.9669 10 7 5.5325 3.5966 -0.2449 11 6 6.0594 4.7748 -0.7792 12 6 5.2042 5.7898 -1.2032 13 6 5.7161 6.9620 -1.7338 14 6 7.0769 7.1375 -1.8478 15 6 7.9532 6.1210 -1.4237 16 6 9.3520 6.2939 -1.5381 17 1 9.7726 7.2883 -1.5665 18 6 10.1912 5.1768 -1.6144 19 7 9.6961 4.0069 -1.9271 20 14 12.0184 5.3559 -1.2698 21 1 12.2142 5.8579 0.1140 22 1 12.6813 4.0351 -1.4151 23 1 12.6120 6.3170 -2.2336 24 6 7.4291 4.9342 -0.8814 25 6 3.7369 1.9413 -0.1257 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.6636 2.2778 1.3971 30 1 2.2355 1.9149 2.1493 31 1 1.5952 4.3792 0.4659 32 1 1.7465 4.3438 2.2394 33 1 4.0948 3.5784 2.0241 34 1 3.8481 5.1273 1.1829 35 1 6.1272 2.8895 0.0505 36 1 4.1353 5.6614 -1.1175 37 1 5.0444 7.7427 -2.0592 38 1 7.4713 8.0533 -2.2626 39 1 10.2778 3.2324 -1.9797 40 1 8.0932 4.1502 -0.5487 41 1 4.0783 1.4896 -1.0571 42 1 4.2295 1.4546 0.7160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894767528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:40 Heat of formation + Delta-G solvation = -15.974649 kcal Electronic energy + Delta-G solvation = -20736.103056 eV Core-core repulsion = 17805.007254 eV Total energy + Delta-G solvation = -2931.095802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32304 -38.90495 -36.04756 -34.90553 -31.89664 -31.40151 -31.31081 -29.68297 -28.16744 -27.11383 -23.81965 -23.55300 -22.70800 -21.57145 -20.87083 -19.08665 -17.70316 -17.49793 -16.55064 -16.53687 -16.23878 -15.75422 -15.40802 -15.24053 -14.79850 -14.60090 -14.35794 -14.24417 -14.08411 -13.95770 -13.48069 -13.40464 -13.09306 -12.80487 -12.75958 -12.64057 -12.47498 -12.25685 -12.04834 -11.79078 -11.62892 -11.59588 -11.33242 -11.21408 -11.03075 -10.71846 -10.39768 -9.23480 -8.70157 -8.61229 -7.89015 -6.30893 0.70562 1.10627 1.35349 1.38313 1.49528 1.60219 1.66338 2.23184 2.74737 2.83391 3.62313 3.77070 3.88189 3.92172 4.14621 4.18047 4.32473 4.36587 4.37560 4.39258 4.42417 4.53757 4.61387 4.80268 4.87735 4.91165 5.01147 5.01516 5.06348 5.09002 5.20488 5.23001 5.31266 5.35170 5.41853 5.50680 5.62590 5.97737 6.12736 6.23029 6.28815 6.59662 6.95580 7.06656 7.07844 7.26300 8.38943 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.003413 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.875870 B = 8202.681170 C = 8925.896630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.316 6.316 3 C -0.032 4.032 4 H 0.092 0.908 5 C -0.106 4.106 6 C -0.106 4.106 7 C -0.130 4.130 8 C 0.169 3.831 9 H 0.068 0.932 10 N -0.751 5.751 11 C 0.224 3.776 12 C -0.298 4.298 13 C -0.063 4.063 14 C -0.287 4.287 15 C 0.108 3.892 16 C -0.505 4.505 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.979 3.021 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.260 1.260 24 C -0.260 4.260 25 C -0.097 4.097 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.390 0.610 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.284 0.716 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 -6.894 6.286 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.087 6.087 3 C -0.161 4.161 4 H 0.111 0.889 5 C -0.145 4.145 6 C -0.146 4.146 7 C -0.169 4.169 8 C 0.062 3.938 9 H 0.086 0.914 10 N -0.381 5.381 11 C 0.123 3.877 12 C -0.321 4.321 13 C -0.082 4.082 14 C -0.308 4.308 15 C 0.105 3.895 16 C -0.535 4.535 17 H 0.089 0.911 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.185 1.185 24 C -0.284 4.284 25 C -0.136 4.136 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.223 0.777 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.351 -8.051 6.187 19.246 hybrid contribution 0.636 0.780 -0.085 1.010 sum -15.715 -7.271 6.102 18.359 Atomic orbital electron populations 1.23440 0.90925 1.07372 1.05958 1.87131 1.11026 1.12517 1.98073 1.23020 0.98277 0.92551 1.02280 0.88943 1.21843 1.01755 0.95443 0.95428 1.21488 0.94214 0.95787 1.03142 1.22005 0.96837 1.00668 0.97426 1.20721 0.80814 0.94616 0.97644 0.91398 1.44592 1.05599 1.16992 1.70938 1.17723 0.91883 0.86545 0.91546 1.20223 0.97542 0.96353 1.17982 1.20653 0.94317 0.96469 0.96734 1.21014 0.93880 1.01380 1.14489 1.17708 0.93494 0.91318 0.86930 1.19778 0.92268 0.94024 1.47434 0.91085 1.26706 1.05722 0.94035 0.91304 1.69921 1.39647 1.01347 1.33863 0.85314 0.76164 0.78675 0.79875 1.18669 1.19203 1.18461 1.20654 0.92203 1.01696 1.13878 1.21449 0.93935 0.95483 1.02745 0.87184 0.89095 0.89740 0.89928 0.91021 0.91229 0.90011 0.92238 0.92868 0.77674 0.86772 0.86419 0.89334 0.90512 0.88418 0.91935 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.45 113.37 1.19 -0.14 16 2 S -0.32 -6.42 21.79 -56.49 -1.23 -7.65 16 3 C -0.03 -0.63 2.65 30.60 0.08 -0.55 16 4 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.11 -1.71 5.11 30.60 0.16 -1.56 16 6 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 7 C -0.13 -3.28 5.44 30.59 0.17 -3.11 16 8 C 0.17 4.85 2.15 44.97 0.10 4.95 16 9 H 0.07 2.06 6.46 -2.39 -0.02 2.04 16 10 N -0.75 -28.09 5.24 -319.21 -1.67 -29.76 16 11 C 0.22 10.41 6.63 38.16 0.25 10.66 16 12 C -0.30 -13.07 8.87 22.59 0.20 -12.87 16 13 C -0.06 -2.87 10.01 22.20 0.22 -2.64 16 14 C -0.29 -14.91 9.79 22.75 0.22 -14.68 16 15 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 16 C -0.51 -28.62 9.05 23.46 0.21 -28.41 16 17 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 18 C 0.04 1.95 5.14 85.25 0.44 2.39 16 19 N -0.82 -44.52 10.95 21.82 0.24 -44.28 16 20 Si 0.98 39.76 29.59 68.60 2.03 41.79 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 C -0.26 -14.10 8.53 22.86 0.19 -13.90 16 25 C -0.10 -2.40 4.68 30.58 0.14 -2.25 16 26 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 0.87 7.14 -2.39 -0.02 0.85 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.03 6.92 -2.39 -0.02 1.01 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.56 7.73 -2.39 -0.02 1.54 16 35 H 0.39 14.39 8.61 -92.71 -0.80 13.59 16 36 H 0.11 4.31 6.10 -2.91 -0.02 4.29 16 37 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 40 H 0.10 5.55 6.16 -2.91 -0.02 5.54 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -62.55 343.64 3.20 -59.35 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: 0.21 Total: 38.35 kcal Atomic # 6 Polarization: -61.44 SS G_CDS: 3.63 Total: -57.80 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.44 Total: -74.04 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 16 Polarization: -6.42 SS G_CDS: -1.23 Total: -7.65 kcal Total: -62.55 3.20 -59.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.373 kcal (2) G-P(sol) polarization free energy of solvation -62.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds