Wall clock time and date at job start Tue Mar 31 2020 07:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00082 * 2 1 4 4 H 1.08998 * 109.47116 * 305.00201 * 3 2 1 5 5 C 1.53005 * 109.46904 * 65.00022 * 3 2 1 6 6 C 1.53002 * 109.46796 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46903 * 299.99619 * 6 5 3 8 8 C 1.52997 * 109.46862 * 60.00667 * 7 6 5 9 9 H 1.09001 * 109.46978 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47221 * 59.99836 * 8 7 6 11 11 C 1.39676 * 120.00249 * 85.00388 * 10 8 7 12 12 C 1.39338 * 119.95382 * 359.97438 * 11 10 8 13 13 C 1.38475 * 120.42855 * 179.97438 * 12 11 10 14 14 C 1.37689 * 120.32200 * 359.97438 * 13 12 11 15 15 C 1.40744 * 119.89609 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.21137 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99582 * 24.33173 * 16 15 14 18 18 C 1.39931 * 120.00337 * 204.33832 * 16 15 14 19 19 N 1.30828 * 119.99858 * 17.73474 * 18 16 15 20 20 Si 1.86794 * 120.00215 * 197.73717 * 18 16 15 21 21 H 1.48501 * 109.47091 * 94.68872 * 20 18 16 22 22 H 1.48501 * 109.47333 * 214.69072 * 20 18 16 23 23 H 1.48506 * 109.47162 * 334.68963 * 20 18 16 24 24 C 1.38272 * 119.95290 * 179.72387 * 11 10 8 25 25 C 1.52991 * 109.47303 * 185.00086 * 3 2 1 26 26 H 1.09006 * 109.46409 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47382 * 60.00104 * 1 2 3 28 28 H 1.08996 * 109.46804 * 299.99684 * 1 2 3 29 29 H 1.09001 * 109.47199 * 300.00185 * 5 3 2 30 30 H 1.08998 * 109.47087 * 60.00162 * 5 3 2 31 31 H 1.08998 * 109.47439 * 60.00048 * 6 5 3 32 32 H 1.09005 * 109.46418 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46949 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47424 * 300.00439 * 7 6 5 35 35 H 0.96996 * 119.99689 * 264.99393 * 10 8 7 36 36 H 1.08007 * 119.78618 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.83982 * 179.97438 * 13 12 11 38 38 H 1.08006 * 120.05310 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00437 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.16190 * 0.02562 * 24 11 10 41 41 H 1.09001 * 109.47533 * 300.00435 * 25 3 2 42 42 H 1.08999 * 109.47402 * 60.00384 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 2.0864 3.8925 1.3071 7 6 3.6013 4.0666 1.1812 8 6 4.0805 3.4326 -0.1262 9 1 5.1596 3.5571 -0.2162 10 7 3.4180 4.0863 -1.2576 11 6 3.9467 5.2640 -1.7911 12 6 5.1040 5.8165 -1.2462 13 6 5.6369 6.9833 -1.7678 14 6 5.0285 7.6105 -2.8319 15 6 3.8590 7.0642 -3.3929 16 6 3.2290 7.7025 -4.4862 17 1 3.8009 8.3456 -5.1386 18 6 1.8646 7.5010 -4.7227 19 7 1.0996 7.0250 -3.7741 20 14 1.1355 7.9115 -6.3927 21 1 1.1065 6.6884 -7.2344 22 1 -0.2470 8.4242 -6.2168 23 1 1.9674 8.9483 -7.0548 24 6 3.3238 5.8770 -2.8626 25 6 3.7369 1.9412 -0.1257 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.6635 2.2778 1.3970 30 1 2.2354 1.9149 2.1492 31 1 1.5935 4.3788 0.4654 32 1 1.7453 4.3440 2.2388 33 1 3.8462 5.1288 1.1814 34 1 4.0942 3.5803 2.0229 35 1 2.6123 3.7013 -1.6362 36 1 5.5890 5.3310 -0.4121 37 1 6.5340 7.4035 -1.3378 38 1 5.4477 8.5206 -3.2350 39 1 0.1539 6.8850 -3.9380 40 1 2.4287 5.4478 -3.2882 41 1 4.2296 1.4545 0.7160 42 1 4.0784 1.4896 -1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894767529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:55 Heat of formation + Delta-G solvation = -0.113975 kcal Electronic energy + Delta-G solvation = -21169.536042 eV Core-core repulsion = 18239.128010 eV Total energy + Delta-G solvation = -2930.408032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.21143 -37.20329 -34.14051 -32.99408 -30.82693 -30.21242 -29.40719 -28.85726 -26.79227 -25.18266 -22.67324 -22.52956 -20.87163 -20.45743 -18.80427 -17.15130 -16.72528 -15.79847 -15.39537 -15.05357 -14.73284 -14.42581 -14.29679 -13.99015 -13.62896 -13.39397 -13.06256 -12.86068 -12.73177 -12.24426 -12.11012 -11.94314 -11.80648 -11.69086 -11.43488 -11.19349 -11.03949 -10.71739 -10.60310 -10.44809 -10.39893 -10.05522 -9.75302 -9.58739 -9.40646 -9.22391 -8.73094 -7.78826 -7.28904 -6.72002 -6.13848 -4.29809 1.59507 2.47550 2.87517 3.10348 3.14383 3.25066 3.35745 3.98531 4.27501 4.61401 4.64571 4.74233 4.97638 4.98627 5.04773 5.20958 5.28567 5.38828 5.45780 5.52564 5.63882 5.68585 5.85715 5.91881 5.97741 6.00312 6.20493 6.28791 6.30800 6.47756 6.50353 6.63498 6.91359 7.13375 7.15707 7.40252 7.45968 7.83504 7.98210 8.13368 8.19477 8.51352 8.71915 8.86182 9.03242 9.14072 10.26650 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.004493 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.531219 B = 6230.041913 C = 7415.406741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.275 6.275 3 C -0.045 4.045 4 H 0.088 0.912 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.135 4.135 8 C 0.167 3.833 9 H 0.080 0.920 10 N -0.752 5.752 11 C 0.218 3.782 12 C -0.299 4.299 13 C -0.066 4.066 14 C -0.258 4.258 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.079 3.921 19 N -0.794 5.794 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.232 4.232 25 C -0.104 4.104 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.386 0.614 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.276 0.724 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -10.805 8.568 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.173 4.173 4 H 0.106 0.894 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.174 4.174 8 C 0.059 3.941 9 H 0.097 0.903 10 N -0.386 5.386 11 C 0.120 3.880 12 C -0.321 4.321 13 C -0.085 4.085 14 C -0.279 4.279 15 C 0.136 3.864 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.138 4.138 19 N -0.419 5.419 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.256 4.256 25 C -0.143 4.143 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.220 0.780 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.233 -11.819 8.736 14.748 hybrid contribution -1.703 1.087 -0.836 2.186 sum -2.936 -10.732 7.900 13.645 Atomic orbital electron populations 1.23364 0.94375 1.06103 1.05027 1.86754 1.07317 1.12611 1.97964 1.23185 1.00524 0.92160 1.01448 0.89365 1.21847 1.00402 0.96609 0.96066 1.21468 0.96947 0.94622 1.02179 1.22036 0.95709 1.02151 0.97501 1.20608 0.97482 0.89344 0.86683 0.90257 1.44533 1.30981 1.27032 1.36012 1.17624 0.92265 0.85413 0.92742 1.19900 1.01645 1.02714 1.07859 1.20287 0.97284 0.94881 0.96088 1.20856 1.02498 1.02316 1.02205 1.17314 0.89667 0.89273 0.90114 1.19573 0.93603 1.25666 1.10683 0.90626 1.25854 0.97369 0.93093 0.97525 1.69868 1.06193 1.34066 1.31798 0.86390 0.78410 0.79599 0.82809 1.19490 1.20459 1.18623 1.20713 1.04602 0.98982 1.01264 1.21652 0.92313 0.97045 1.03327 0.88418 0.90468 0.90521 0.92356 0.91031 0.91028 0.92175 0.90909 0.92204 0.77956 0.89508 0.89739 0.89507 0.91322 0.86688 0.90365 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.45 101.05 1.06 -0.05 16 2 S -0.28 -3.23 21.79 -107.50 -2.34 -5.58 16 3 C -0.04 -0.54 2.48 -26.73 -0.07 -0.60 16 4 H 0.09 1.17 6.50 -51.92 -0.34 0.83 16 5 C -0.11 -1.23 5.11 -26.73 -0.14 -1.37 16 6 C -0.11 -1.45 5.77 -26.73 -0.15 -1.61 16 7 C -0.13 -1.83 5.54 -26.73 -0.15 -1.98 16 8 C 0.17 2.43 2.48 -67.91 -0.17 2.27 16 9 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16 10 N -0.75 -13.51 4.40 -52.20 -0.23 -13.74 16 11 C 0.22 4.91 6.63 -83.86 -0.56 4.35 16 12 C -0.30 -6.58 8.85 -39.09 -0.35 -6.92 16 13 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 14 C -0.26 -6.50 9.79 -38.84 -0.38 -6.88 16 15 C 0.14 3.77 5.57 -106.85 -0.60 3.17 16 16 C -0.47 -12.56 9.05 -37.74 -0.34 -12.91 16 17 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 18 C 0.08 2.00 5.14 -17.35 -0.09 1.91 16 19 N -0.79 -20.57 10.96 55.55 0.61 -19.96 16 20 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.23 -5.96 8.53 -38.68 -0.33 -6.29 16 25 C -0.10 -1.30 4.90 -26.71 -0.13 -1.43 16 26 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.64 7.14 -51.93 -0.37 0.27 16 29 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.09 7.60 -51.93 -0.39 0.70 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 6.81 6.87 -40.82 -0.28 6.53 16 36 H 0.09 1.71 6.07 -52.48 -0.32 1.39 16 37 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 39 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 40 H 0.12 3.07 6.16 -52.48 -0.32 2.74 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -27.31 339.12 -11.14 -38.46 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.48 Total: 12.06 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -2.78 Total: -30.25 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.38 Total: -33.70 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.34 Total: -5.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.31 -11.14 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.343 kcal (2) G-P(sol) polarization free energy of solvation -27.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds