Wall clock time and date at job start Tue Mar 31 2020 07:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00082 * 2 1 4 4 H 1.08998 * 109.47116 * 305.00201 * 3 2 1 5 5 C 1.53005 * 109.46904 * 65.00022 * 3 2 1 6 6 C 1.53002 * 109.46796 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46903 * 299.99619 * 6 5 3 8 8 C 1.52997 * 109.46862 * 60.00667 * 7 6 5 9 9 H 1.09001 * 109.46978 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47221 * 59.99836 * 8 7 6 11 11 C 1.39676 * 120.00249 * 85.00388 * 10 8 7 12 12 C 1.39338 * 119.95382 * 359.97438 * 11 10 8 13 13 C 1.38475 * 120.42855 * 179.97438 * 12 11 10 14 14 C 1.37689 * 120.32200 * 359.97438 * 13 12 11 15 15 C 1.40744 * 119.89609 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.21137 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99582 * 24.33173 * 16 15 14 18 18 C 1.39931 * 120.00337 * 204.33832 * 16 15 14 19 19 N 1.30828 * 119.99858 * 17.73474 * 18 16 15 20 20 Si 1.86794 * 120.00215 * 197.73717 * 18 16 15 21 21 H 1.48501 * 109.47091 * 94.68872 * 20 18 16 22 22 H 1.48501 * 109.47333 * 214.69072 * 20 18 16 23 23 H 1.48506 * 109.47162 * 334.68963 * 20 18 16 24 24 C 1.38272 * 119.95290 * 179.72387 * 11 10 8 25 25 C 1.52991 * 109.47303 * 185.00086 * 3 2 1 26 26 H 1.09006 * 109.46409 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47382 * 60.00104 * 1 2 3 28 28 H 1.08996 * 109.46804 * 299.99684 * 1 2 3 29 29 H 1.09001 * 109.47199 * 300.00185 * 5 3 2 30 30 H 1.08998 * 109.47087 * 60.00162 * 5 3 2 31 31 H 1.08998 * 109.47439 * 60.00048 * 6 5 3 32 32 H 1.09005 * 109.46418 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46949 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47424 * 300.00439 * 7 6 5 35 35 H 0.96996 * 119.99689 * 264.99393 * 10 8 7 36 36 H 1.08007 * 119.78618 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.83982 * 179.97438 * 13 12 11 38 38 H 1.08006 * 120.05310 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00437 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.16190 * 0.02562 * 24 11 10 41 41 H 1.09001 * 109.47533 * 300.00435 * 25 3 2 42 42 H 1.08999 * 109.47402 * 60.00384 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 2.0864 3.8925 1.3071 7 6 3.6013 4.0666 1.1812 8 6 4.0805 3.4326 -0.1262 9 1 5.1596 3.5571 -0.2162 10 7 3.4180 4.0863 -1.2576 11 6 3.9467 5.2640 -1.7911 12 6 5.1040 5.8165 -1.2462 13 6 5.6369 6.9833 -1.7678 14 6 5.0285 7.6105 -2.8319 15 6 3.8590 7.0642 -3.3929 16 6 3.2290 7.7025 -4.4862 17 1 3.8009 8.3456 -5.1386 18 6 1.8646 7.5010 -4.7227 19 7 1.0996 7.0250 -3.7741 20 14 1.1355 7.9115 -6.3927 21 1 1.1065 6.6884 -7.2344 22 1 -0.2470 8.4242 -6.2168 23 1 1.9674 8.9483 -7.0548 24 6 3.3238 5.8770 -2.8626 25 6 3.7369 1.9412 -0.1257 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.6635 2.2778 1.3970 30 1 2.2354 1.9149 2.1492 31 1 1.5935 4.3788 0.4654 32 1 1.7453 4.3440 2.2388 33 1 3.8462 5.1288 1.1814 34 1 4.0942 3.5803 2.0229 35 1 2.6123 3.7013 -1.6362 36 1 5.5890 5.3310 -0.4121 37 1 6.5340 7.4035 -1.3378 38 1 5.4477 8.5206 -3.2350 39 1 0.1539 6.8850 -3.9380 40 1 2.4287 5.4478 -3.2882 41 1 4.2296 1.4545 0.7160 42 1 4.0784 1.4896 -1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894767529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:54 Heat of formation + Delta-G solvation = -12.214565 kcal Electronic energy + Delta-G solvation = -21170.060763 eV Core-core repulsion = 18239.128010 eV Total energy + Delta-G solvation = -2930.932753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.51086 -38.87119 -35.83731 -34.66055 -31.88522 -31.50234 -31.28255 -29.69199 -28.38019 -27.10029 -23.76475 -23.70728 -22.62288 -22.08517 -20.18734 -18.85625 -18.07135 -17.22236 -16.72617 -16.49564 -16.20178 -15.98323 -15.48539 -15.05033 -14.72082 -14.57944 -14.46923 -14.17100 -13.97597 -13.93044 -13.47388 -13.24506 -13.08235 -12.96461 -12.77262 -12.71532 -12.61570 -12.35654 -12.08598 -11.75649 -11.56767 -11.46916 -11.29245 -11.16110 -11.01036 -10.73090 -10.37986 -9.22310 -8.69945 -8.61577 -7.85697 -6.30993 0.71315 1.09654 1.36440 1.37497 1.50294 1.58788 1.61729 2.22517 2.80027 2.85834 3.61550 3.65013 3.88895 3.96325 4.16120 4.21615 4.27563 4.32435 4.37112 4.44228 4.51124 4.58196 4.65654 4.81176 4.85091 4.86297 5.00413 5.03375 5.04066 5.10786 5.20633 5.24452 5.33606 5.37500 5.41846 5.52034 5.63562 5.99016 6.14255 6.23666 6.30103 6.60636 6.96495 7.07859 7.09158 7.27564 8.38584 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.004493 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.531219 B = 6230.041913 C = 7415.406741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.041 4.041 4 H 0.070 0.930 5 C -0.100 4.100 6 C -0.110 4.110 7 C -0.130 4.130 8 C 0.164 3.836 9 H 0.077 0.923 10 N -0.744 5.744 11 C 0.226 3.774 12 C -0.297 4.297 13 C -0.064 4.064 14 C -0.288 4.288 15 C 0.109 3.891 16 C -0.506 4.506 17 H 0.069 0.931 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.260 4.260 25 C -0.095 4.095 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.387 0.613 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.284 0.716 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 -12.295 9.952 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.068 6.068 3 C -0.169 4.169 4 H 0.088 0.912 5 C -0.140 4.140 6 C -0.149 4.149 7 C -0.169 4.169 8 C 0.057 3.943 9 H 0.095 0.905 10 N -0.375 5.375 11 C 0.125 3.875 12 C -0.320 4.320 13 C -0.082 4.082 14 C -0.309 4.309 15 C 0.106 3.894 16 C -0.536 4.536 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.448 5.448 20 Si 0.798 3.202 21 H -0.189 1.189 22 H -0.192 1.192 23 H -0.184 1.184 24 C -0.285 4.285 25 C -0.134 4.134 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.221 0.779 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.445 -13.339 10.153 16.826 hybrid contribution -1.612 1.453 -1.138 2.450 sum -3.057 -11.886 9.015 15.228 Atomic orbital electron populations 1.23440 0.92009 1.07331 1.05486 1.86811 1.09989 1.11988 1.98012 1.23081 1.00027 0.92515 1.01314 0.91182 1.21785 1.01134 0.95105 0.95926 1.21416 0.96204 0.95794 1.01495 1.21984 0.96408 1.00796 0.97715 1.20832 0.97023 0.90648 0.85816 0.90464 1.44637 1.30807 1.25611 1.36493 1.17710 0.91972 0.86278 0.91546 1.20237 1.01184 1.02378 1.08165 1.20653 0.97897 0.94745 0.94939 1.21002 1.02942 1.03141 1.03772 1.17691 0.90752 0.90081 0.90838 1.19808 0.94872 1.27191 1.11728 0.91275 1.26657 0.97129 0.92604 1.01158 1.69923 1.06740 1.34556 1.33598 0.85281 0.77794 0.79441 0.77690 1.18880 1.19211 1.18393 1.20635 1.04922 0.99667 1.03245 1.21560 0.92872 0.95174 1.03791 0.86824 0.90656 0.89426 0.91497 0.89544 0.94080 0.90942 0.93256 0.89252 0.77914 0.86605 0.86544 0.89542 0.90598 0.88554 0.88296 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.45 113.37 1.19 -0.66 16 2 S -0.30 -6.37 21.79 -56.49 -1.23 -7.60 16 3 C -0.04 -0.91 2.48 30.59 0.08 -0.83 16 4 H 0.07 1.82 6.50 -2.39 -0.02 1.81 16 5 C -0.10 -2.00 5.11 30.60 0.16 -1.84 16 6 C -0.11 -2.64 5.77 30.60 0.18 -2.46 16 7 C -0.13 -3.25 5.54 30.59 0.17 -3.08 16 8 C 0.16 4.50 2.48 45.01 0.11 4.61 16 9 H 0.08 2.19 6.47 -2.39 -0.02 2.17 16 10 N -0.74 -26.69 4.40 -319.05 -1.40 -28.09 16 11 C 0.23 10.29 6.63 38.16 0.25 10.54 16 12 C -0.30 -12.82 8.85 22.59 0.20 -12.62 16 13 C -0.06 -2.88 10.02 22.20 0.22 -2.66 16 14 C -0.29 -14.92 9.79 22.75 0.22 -14.70 16 15 C 0.11 6.17 5.57 -21.31 -0.12 6.05 16 16 C -0.51 -28.63 9.05 23.46 0.21 -28.41 16 17 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 18 C 0.04 2.04 5.14 85.25 0.44 2.48 16 19 N -0.82 -44.05 10.96 21.82 0.24 -43.81 16 20 Si 0.98 39.63 29.59 68.60 2.03 41.66 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 C -0.26 -13.95 8.53 22.86 0.20 -13.75 16 25 C -0.09 -2.17 4.90 30.61 0.15 -2.02 16 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.23 7.14 -2.39 -0.02 1.22 16 29 H 0.07 1.24 6.92 -2.39 -0.02 1.22 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.24 7.60 -2.39 -0.02 1.22 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.39 13.91 6.87 -92.71 -0.64 13.27 16 36 H 0.12 4.28 6.07 -2.91 -0.02 4.27 16 37 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.09 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 40 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -61.19 339.12 3.66 -57.53 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.37 Total: 39.67 kcal Atomic # 6 Polarization: -63.00 SS G_CDS: 3.65 Total: -59.35 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.17 Total: -71.90 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -1.23 Total: -7.60 kcal Total: -61.19 3.66 -57.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.316 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds