Wall clock time and date at job start Tue Mar 31 2020 07:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 103.00160 * 2 1 4 4 H 1.08999 * 109.46516 * 55.00036 * 3 2 1 5 5 C 1.53001 * 109.47083 * 295.00292 * 3 2 1 6 6 C 1.52997 * 109.46971 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47338 * 59.99781 * 6 5 3 8 8 C 1.52996 * 109.46944 * 300.00013 * 7 6 5 9 9 H 1.09004 * 109.47616 * 299.99844 * 8 7 6 10 10 N 1.46508 * 109.47011 * 180.02562 * 8 7 6 11 11 C 1.39674 * 120.00145 * 85.00055 * 10 8 7 12 12 C 1.39335 * 119.95662 * 359.97438 * 11 10 8 13 13 C 1.38475 * 120.43124 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32304 * 359.97438 * 13 12 11 15 15 C 1.40758 * 119.89364 * 0.02562 * 14 13 12 16 16 C 1.41400 * 120.20684 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99904 * 24.32972 * 16 15 14 18 18 C 1.39938 * 119.99811 * 204.32744 * 16 15 14 19 19 N 1.30823 * 119.99673 * 17.74242 * 18 16 15 20 20 Si 1.86802 * 119.99892 * 197.74324 * 18 16 15 21 21 H 1.48501 * 109.47202 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46811 * 119.99960 * 20 18 16 23 23 H 1.48493 * 109.47017 * 240.00163 * 20 18 16 24 24 C 1.38279 * 119.95303 * 179.72859 * 11 10 8 25 25 C 1.52995 * 109.47337 * 60.00159 * 8 7 6 26 26 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46771 * 299.99760 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99521 * 1 2 3 29 29 H 1.08997 * 109.47310 * 59.99867 * 5 3 2 30 30 H 1.09002 * 109.46718 * 299.99847 * 5 3 2 31 31 H 1.09007 * 109.46722 * 299.99640 * 6 5 3 32 32 H 1.09002 * 109.46826 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46960 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46833 * 59.99861 * 7 6 5 35 35 H 0.97006 * 119.99635 * 264.72127 * 10 8 7 36 36 H 1.08004 * 119.78012 * 0.02655 * 12 11 10 37 37 H 1.07996 * 119.84179 * 179.97438 * 13 12 11 38 38 H 1.07993 * 120.05527 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99267 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.16231 * 359.97132 * 24 11 10 41 41 H 1.08999 * 109.47413 * 59.99556 * 25 8 7 42 42 H 1.08997 * 109.47718 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2540 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0876 3.8922 -1.3076 7 6 3.6026 4.0653 -1.1822 8 6 4.0818 3.4312 0.1251 9 1 3.5896 3.9181 0.9671 10 7 5.5324 3.5975 0.2455 11 6 6.0583 4.7758 0.7804 12 6 5.2025 5.7927 1.1986 13 6 5.7133 6.9646 1.7308 14 6 7.0737 7.1376 1.8529 15 6 7.9508 6.1192 1.4347 16 6 9.3491 6.2901 1.5566 17 1 9.7475 6.9739 2.2915 18 6 10.2167 5.5732 0.7250 19 7 9.7652 5.0240 -0.3732 20 14 12.0194 5.4005 1.1830 21 1 12.2748 6.1076 2.4636 22 1 12.3554 3.9622 1.3368 23 1 12.8610 5.9937 0.1130 24 6 7.4275 4.9294 0.8987 25 6 3.7371 1.9406 0.1254 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.6636 2.2779 -1.3969 30 1 2.2354 1.9149 -2.1491 31 1 1.5953 4.3791 -0.4657 32 1 1.7457 4.3440 -2.2388 33 1 3.8482 5.1273 -1.1828 34 1 4.0948 3.5784 -2.0240 35 1 6.1275 2.8876 -0.0425 36 1 4.1338 5.6656 1.1079 37 1 5.0412 7.7468 2.0516 38 1 7.4673 8.0532 2.2689 39 1 10.3667 4.5274 -0.9498 40 1 8.0917 4.1401 0.5790 41 1 4.2293 1.4537 -0.7164 42 1 4.0789 1.4887 1.0565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894767531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:11 Heat of formation + Delta-G solvation = -3.028488 kcal Electronic energy + Delta-G solvation = -20740.138489 eV Core-core repulsion = 17809.604074 eV Total energy + Delta-G solvation = -2930.534415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.01619 -37.28904 -34.43083 -33.15053 -30.90020 -30.10917 -29.40314 -28.94640 -26.64028 -25.17981 -22.77998 -22.29518 -21.01925 -19.96390 -19.63020 -17.26974 -16.54946 -15.91857 -15.30267 -14.88231 -14.81414 -14.53348 -14.21790 -14.10158 -13.77848 -13.62017 -13.17609 -12.87997 -12.71536 -12.36479 -12.17425 -12.04715 -11.74395 -11.55181 -11.34521 -11.14855 -10.99235 -10.79879 -10.64931 -10.54888 -10.43227 -10.25187 -9.83234 -9.57211 -9.40024 -9.21566 -8.72776 -7.86960 -7.28179 -6.70540 -6.13896 -4.28398 1.48910 2.39273 2.87845 3.12070 3.17679 3.25668 3.35859 4.00020 4.13880 4.51312 4.73097 4.78543 4.86881 4.87761 5.00819 5.10619 5.17028 5.32067 5.37611 5.42526 5.47099 5.61177 5.84569 5.86814 5.93477 5.98067 6.06678 6.21224 6.30454 6.39960 6.50421 6.65430 6.91688 7.14027 7.16725 7.41405 7.46979 7.84211 7.98828 8.13936 8.20665 8.52177 8.73688 8.87071 9.04287 9.14979 10.28104 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.003377 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.949984 B = 8288.771585 C = 8895.141538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.269 6.269 3 C -0.042 4.042 4 H 0.088 0.912 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.136 4.136 8 C 0.171 3.829 9 H 0.074 0.926 10 N -0.755 5.755 11 C 0.218 3.782 12 C -0.300 4.300 13 C -0.067 4.067 14 C -0.258 4.258 15 C 0.139 3.861 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.903 3.097 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.231 4.231 25 C -0.106 4.106 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.389 0.611 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.276 0.724 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -7.854 -2.342 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.040 6.040 3 C -0.171 4.171 4 H 0.106 0.894 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.175 4.175 8 C 0.062 3.938 9 H 0.092 0.908 10 N -0.387 5.387 11 C 0.119 3.881 12 C -0.322 4.322 13 C -0.085 4.085 14 C -0.279 4.279 15 C 0.136 3.864 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.140 4.140 19 N -0.418 5.418 20 Si 0.728 3.272 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.255 4.255 25 C -0.145 4.145 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.092 0.908 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.313 -8.866 -2.505 17.021 hybrid contribution 0.150 0.646 -0.070 0.667 sum -14.162 -8.219 -2.575 16.576 Atomic orbital electron populations 1.23372 0.94568 1.06200 1.04852 1.86922 1.06983 1.12164 1.97937 1.23131 1.00136 0.92546 1.01294 0.89383 1.21879 1.00421 0.96446 0.96460 1.21528 0.96939 0.94945 1.01963 1.22095 0.94267 1.02443 0.98732 1.20532 0.83376 0.92887 0.97001 0.90814 1.44444 1.03708 1.18291 1.72247 1.17622 0.92653 0.85204 0.92585 1.19892 0.96222 0.97279 1.18831 1.20280 0.94763 0.95459 0.98045 1.20859 0.92805 0.99598 1.14619 1.17325 0.92734 0.89228 0.87151 1.19581 0.91004 1.21887 1.16949 0.90598 1.25874 1.01047 0.93484 0.93559 1.69875 1.37331 1.26105 1.08439 0.86353 0.82282 0.78845 0.79739 1.18479 1.19844 1.20147 1.20726 0.90856 1.00178 1.13724 1.21600 0.92034 0.97403 1.03483 0.88342 0.90612 0.90503 0.92193 0.90694 0.91954 0.91630 0.90837 0.91940 0.77755 0.89580 0.89746 0.89473 0.91280 0.86570 0.90831 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.45 101.05 1.06 0.14 16 2 S -0.27 -2.93 21.79 -107.50 -2.34 -5.28 16 3 C -0.04 -0.45 2.65 -26.73 -0.07 -0.52 16 4 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 5 C -0.11 -1.11 5.11 -26.73 -0.14 -1.24 16 6 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 7 C -0.14 -1.88 5.43 -26.73 -0.15 -2.03 16 8 C 0.17 2.53 2.14 -67.93 -0.15 2.39 16 9 H 0.07 1.16 6.47 -51.93 -0.34 0.83 16 10 N -0.75 -14.04 5.25 -52.22 -0.27 -14.31 16 11 C 0.22 5.00 6.63 -83.86 -0.56 4.44 16 12 C -0.30 -6.69 8.85 -39.09 -0.35 -7.04 16 13 C -0.07 -1.53 10.02 -39.70 -0.40 -1.93 16 14 C -0.26 -6.55 9.79 -38.83 -0.38 -6.93 16 15 C 0.14 3.78 5.57 -106.85 -0.60 3.19 16 16 C -0.46 -12.59 9.05 -37.74 -0.34 -12.94 16 17 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 18 C 0.08 1.98 5.14 -17.35 -0.09 1.90 16 19 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 20 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 C -0.23 -6.02 8.53 -38.68 -0.33 -6.35 16 25 C -0.11 -1.34 4.68 -26.74 -0.13 -1.46 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.08 0.52 7.14 -51.92 -0.37 0.15 16 29 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.39 7.01 8.61 -40.82 -0.35 6.66 16 36 H 0.09 1.72 6.07 -52.48 -0.32 1.40 16 37 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -27.87 343.55 -11.28 -39.16 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.66 Total: 11.15 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -2.76 Total: -29.77 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.33 Total: -34.42 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.34 Total: -5.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.87 -11.28 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.127 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds