Wall clock time and date at job start Tue Mar 31 2020 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 103.00160 * 2 1 4 4 H 1.08999 * 109.46516 * 55.00036 * 3 2 1 5 5 C 1.53001 * 109.47083 * 295.00292 * 3 2 1 6 6 C 1.52997 * 109.46971 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47338 * 59.99781 * 6 5 3 8 8 C 1.52996 * 109.46944 * 300.00013 * 7 6 5 9 9 H 1.09004 * 109.47616 * 299.99844 * 8 7 6 10 10 N 1.46508 * 109.47011 * 180.02562 * 8 7 6 11 11 C 1.39674 * 120.00145 * 85.00055 * 10 8 7 12 12 C 1.39335 * 119.95662 * 359.97438 * 11 10 8 13 13 C 1.38475 * 120.43124 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32304 * 359.97438 * 13 12 11 15 15 C 1.40758 * 119.89364 * 0.02562 * 14 13 12 16 16 C 1.41400 * 120.20684 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99904 * 24.32972 * 16 15 14 18 18 C 1.39938 * 119.99811 * 204.32744 * 16 15 14 19 19 N 1.30823 * 119.99673 * 17.74242 * 18 16 15 20 20 Si 1.86802 * 119.99892 * 197.74324 * 18 16 15 21 21 H 1.48501 * 109.47202 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46811 * 119.99960 * 20 18 16 23 23 H 1.48493 * 109.47017 * 240.00163 * 20 18 16 24 24 C 1.38279 * 119.95303 * 179.72859 * 11 10 8 25 25 C 1.52995 * 109.47337 * 60.00159 * 8 7 6 26 26 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46771 * 299.99760 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99521 * 1 2 3 29 29 H 1.08997 * 109.47310 * 59.99867 * 5 3 2 30 30 H 1.09002 * 109.46718 * 299.99847 * 5 3 2 31 31 H 1.09007 * 109.46722 * 299.99640 * 6 5 3 32 32 H 1.09002 * 109.46826 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46960 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46833 * 59.99861 * 7 6 5 35 35 H 0.97006 * 119.99635 * 264.72127 * 10 8 7 36 36 H 1.08004 * 119.78012 * 0.02655 * 12 11 10 37 37 H 1.07996 * 119.84179 * 179.97438 * 13 12 11 38 38 H 1.07993 * 120.05527 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99267 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.16231 * 359.97132 * 24 11 10 41 41 H 1.08999 * 109.47413 * 59.99556 * 25 8 7 42 42 H 1.08997 * 109.47718 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2540 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0876 3.8922 -1.3076 7 6 3.6026 4.0653 -1.1822 8 6 4.0818 3.4312 0.1251 9 1 3.5896 3.9181 0.9671 10 7 5.5324 3.5975 0.2455 11 6 6.0583 4.7758 0.7804 12 6 5.2025 5.7927 1.1986 13 6 5.7133 6.9646 1.7308 14 6 7.0737 7.1376 1.8529 15 6 7.9508 6.1192 1.4347 16 6 9.3491 6.2901 1.5566 17 1 9.7475 6.9739 2.2915 18 6 10.2167 5.5732 0.7250 19 7 9.7652 5.0240 -0.3732 20 14 12.0194 5.4005 1.1830 21 1 12.2748 6.1076 2.4636 22 1 12.3554 3.9622 1.3368 23 1 12.8610 5.9937 0.1130 24 6 7.4275 4.9294 0.8987 25 6 3.7371 1.9406 0.1254 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.6636 2.2779 -1.3969 30 1 2.2354 1.9149 -2.1491 31 1 1.5953 4.3791 -0.4657 32 1 1.7457 4.3440 -2.2388 33 1 3.8482 5.1273 -1.1828 34 1 4.0948 3.5784 -2.0240 35 1 6.1275 2.8876 -0.0425 36 1 4.1338 5.6656 1.1079 37 1 5.0412 7.7468 2.0516 38 1 7.4673 8.0532 2.2689 39 1 10.3667 4.5274 -0.9498 40 1 8.0917 4.1401 0.5790 41 1 4.2293 1.4537 -0.7164 42 1 4.0789 1.4887 1.0565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894767531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:10 Heat of formation + Delta-G solvation = -16.028225 kcal Electronic energy + Delta-G solvation = -20740.702200 eV Core-core repulsion = 17809.604074 eV Total energy + Delta-G solvation = -2931.098126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32265 -38.90584 -36.04989 -34.90695 -31.90062 -31.40187 -31.31181 -29.67911 -28.16950 -27.11573 -23.82292 -23.55372 -22.70814 -21.57350 -20.87367 -19.09150 -17.70428 -17.49964 -16.55078 -16.53131 -16.23733 -15.74887 -15.41345 -15.24402 -14.80195 -14.57074 -14.37378 -14.27392 -14.09709 -13.94804 -13.46883 -13.40107 -13.07962 -12.88714 -12.73929 -12.60401 -12.46652 -12.29945 -11.98997 -11.79537 -11.66239 -11.55198 -11.36756 -11.20845 -11.04921 -10.70970 -10.39772 -9.23385 -8.69689 -8.61509 -7.89189 -6.30936 0.70796 1.08811 1.35093 1.38460 1.53025 1.58032 1.66501 2.23243 2.74394 2.83340 3.62233 3.77248 3.88092 3.91905 4.14305 4.17357 4.32782 4.36610 4.37651 4.39599 4.42252 4.53645 4.60768 4.80283 4.87939 4.90820 5.01192 5.01281 5.05949 5.08603 5.20639 5.22677 5.30904 5.34912 5.41377 5.50736 5.62542 5.97803 6.12644 6.23149 6.28740 6.59707 6.95685 7.06606 7.07717 7.26214 8.38865 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.003377 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.949984 B = 8288.771585 C = 8895.141538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.315 6.315 3 C -0.032 4.032 4 H 0.094 0.906 5 C -0.106 4.106 6 C -0.106 4.106 7 C -0.131 4.131 8 C 0.170 3.830 9 H 0.071 0.929 10 N -0.751 5.751 11 C 0.224 3.776 12 C -0.298 4.298 13 C -0.063 4.063 14 C -0.287 4.287 15 C 0.108 3.892 16 C -0.504 4.504 17 H 0.070 0.930 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.979 3.021 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.266 1.266 24 C -0.260 4.260 25 C -0.097 4.097 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.390 0.610 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.284 0.716 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 -8.526 -2.649 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.086 6.086 3 C -0.161 4.161 4 H 0.112 0.888 5 C -0.145 4.145 6 C -0.146 4.146 7 C -0.170 4.170 8 C 0.063 3.937 9 H 0.089 0.911 10 N -0.381 5.381 11 C 0.123 3.877 12 C -0.321 4.321 13 C -0.082 4.082 14 C -0.308 4.308 15 C 0.105 3.895 16 C -0.533 4.533 17 H 0.088 0.912 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.800 3.200 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.191 1.191 24 C -0.284 4.284 25 C -0.136 4.136 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.483 -9.556 -2.827 19.261 hybrid contribution 0.644 0.804 -0.001 1.030 sum -15.839 -8.752 -2.828 18.316 Atomic orbital electron populations 1.23444 0.90960 1.07370 1.05957 1.87115 1.10990 1.12441 1.98070 1.23016 0.98309 0.92589 1.02211 0.88758 1.21841 1.01759 0.95366 0.95540 1.21482 0.94117 0.95880 1.03116 1.22005 0.96884 1.00534 0.97612 1.20729 0.80809 0.94689 0.97516 0.91117 1.44593 1.05629 1.16867 1.71027 1.17722 0.91874 0.86657 0.91450 1.20223 0.97546 0.96641 1.17670 1.20652 0.94314 0.96466 0.96743 1.21018 0.93968 0.99620 1.16144 1.17714 0.93510 0.90240 0.88025 1.19814 0.91869 1.23568 1.18090 0.91157 1.26706 1.05564 0.92569 0.92959 1.69930 1.39196 1.26474 1.09166 0.85220 0.76300 0.79055 0.79452 1.18371 1.18966 1.19062 1.20653 0.92134 0.99842 1.15791 1.21457 0.93915 0.95343 1.02861 0.87185 0.89673 0.89175 0.89894 0.91158 0.91092 0.90212 0.93177 0.92540 0.77677 0.86760 0.86415 0.89347 0.90532 0.88419 0.91180 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.45 113.37 1.19 -0.11 16 2 S -0.31 -6.25 21.79 -56.49 -1.23 -7.48 16 3 C -0.03 -0.62 2.65 30.59 0.08 -0.54 16 4 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 5 C -0.11 -1.75 5.11 30.59 0.16 -1.59 16 6 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 7 C -0.13 -3.45 5.43 30.59 0.17 -3.28 16 8 C 0.17 4.86 2.14 44.99 0.10 4.96 16 9 H 0.07 2.10 6.47 -2.38 -0.02 2.08 16 10 N -0.75 -28.07 5.25 -319.12 -1.68 -29.74 16 11 C 0.22 10.40 6.63 38.17 0.25 10.65 16 12 C -0.30 -13.05 8.85 22.59 0.20 -12.85 16 13 C -0.06 -2.87 10.02 22.20 0.22 -2.64 16 14 C -0.29 -14.90 9.79 22.76 0.22 -14.68 16 15 C 0.11 6.14 5.57 -21.31 -0.12 6.02 16 16 C -0.50 -28.54 9.05 23.46 0.21 -28.33 16 17 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 18 C 0.04 1.92 5.14 85.26 0.44 2.36 16 19 N -0.82 -44.38 10.95 21.82 0.24 -44.14 16 20 Si 0.98 39.79 29.59 68.60 2.03 41.82 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 24 C -0.26 -14.09 8.53 22.86 0.19 -13.89 16 25 C -0.10 -2.34 4.68 30.59 0.14 -2.20 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.86 7.14 -2.39 -0.02 0.84 16 29 H 0.08 1.05 6.92 -2.39 -0.02 1.03 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.56 7.70 -2.39 -0.02 1.54 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.39 14.38 8.61 -92.70 -0.80 13.58 16 36 H 0.11 4.31 6.07 -2.91 -0.02 4.29 16 37 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.28 13.86 8.30 -92.70 -0.77 13.09 16 40 H 0.10 5.55 6.16 -2.91 -0.02 5.54 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -62.53 343.55 3.20 -59.32 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.21 Total: 38.13 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 3.63 Total: -57.91 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.44 Total: -73.88 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -1.23 Total: -7.48 kcal Total: -62.53 3.20 -59.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.297 kcal (2) G-P(sol) polarization free energy of solvation -62.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds