Wall clock time and date at job start Tue Mar 31 2020 07:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48495 * 109.47571 * 240.00244 * 3 2 1 5 5 H 1.48501 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47025 * 120.00300 * 3 2 1 7 7 C 1.37872 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00487 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47434 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.92533 * 90.00155 * 10 9 7 12 12 C 1.38104 * 120.07376 * 180.27908 * 11 10 9 13 13 C 1.38918 * 119.92017 * 359.44392 * 12 11 10 14 14 N 1.39675 * 120.07039 * 180.27814 * 13 12 11 15 15 C 1.46500 * 120.00199 * 0.25610 * 14 13 12 16 16 C 1.52998 * 109.47174 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.54907 * 64.99569 * 16 15 14 18 18 C 1.53180 * 109.54211 * 304.81704 * 16 15 14 19 19 C 1.53105 * 109.15932 * 183.24576 * 18 16 15 20 20 O 1.42903 * 109.48849 * 57.47207 * 19 18 16 21 21 C 1.42899 * 114.09749 * 298.89326 * 20 19 18 22 22 C 1.53092 * 109.41925 * 61.15979 * 21 20 19 23 23 C 1.38905 * 119.85223 * 0.52779 * 13 12 11 24 24 C 1.38099 * 119.92825 * 359.75374 * 23 13 12 25 25 H 0.96995 * 119.99967 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46701 * 59.99816 * 9 7 2 27 27 H 1.08997 * 109.46777 * 300.00602 * 9 7 2 28 28 H 1.08002 * 119.96057 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.04042 * 179.72222 * 12 11 10 30 30 H 0.96998 * 120.00193 * 180.24886 * 14 13 12 31 31 H 1.09005 * 109.46762 * 299.99634 * 15 14 13 32 32 H 1.09001 * 109.47248 * 59.99432 * 15 14 13 33 33 H 0.96700 * 113.99777 * 300.00732 * 17 16 15 34 34 H 1.09003 * 109.52356 * 303.06057 * 18 16 15 35 35 H 1.08993 * 109.52166 * 63.24701 * 18 16 15 36 36 H 1.09004 * 109.40426 * 297.49370 * 19 18 16 37 37 H 1.09000 * 109.49194 * 177.51256 * 19 18 16 38 38 H 1.08999 * 109.48260 * 301.16941 * 21 20 19 39 39 H 1.09004 * 109.48896 * 181.14613 * 21 20 19 40 40 H 1.08994 * 109.52632 * 182.48995 * 22 21 20 41 41 H 1.08997 * 109.57483 * 62.31985 * 22 21 20 42 42 H 1.08007 * 120.03682 * 179.76844 * 23 13 12 43 43 H 1.07997 * 119.96578 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6787 -4.1689 1.1980 12 6 3.5806 -5.2148 1.2015 13 6 4.0286 -5.7476 -0.0007 14 7 4.9362 -6.8093 -0.0007 15 6 5.4126 -7.3658 1.2680 16 6 6.3905 -8.5087 0.9884 17 8 7.5557 -7.9935 0.3413 18 6 5.7195 -9.5476 0.0846 19 6 6.6757 -10.7251 -0.1234 20 8 7.0317 -11.2799 1.1445 21 6 7.7056 -10.3665 2.0126 22 6 6.7900 -9.1757 2.3083 23 6 3.5758 -5.2189 -1.2027 24 6 2.6784 -4.1692 -1.1991 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.3269 -3.7568 2.1322 29 1 3.9338 -5.6210 2.1379 30 1 5.2511 -7.1782 -0.8407 31 1 5.9182 -6.5871 1.8393 32 1 4.5652 -7.7438 1.8400 33 1 7.3765 -7.5589 -0.5037 34 1 4.8032 -9.9030 0.5560 35 1 5.4829 -9.0943 -0.8779 36 1 7.5742 -10.3764 -0.6327 37 1 6.1870 -11.4878 -0.7297 38 1 8.6175 -10.0132 1.5313 39 1 7.9589 -10.8707 2.9452 40 1 7.3183 -8.4567 2.9344 41 1 5.8960 -9.5224 2.8265 42 1 3.9250 -5.6284 -2.1391 43 1 2.3263 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905543824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:48 Heat of formation + Delta-G solvation = -82.288556 kcal Electronic energy + Delta-G solvation = -22782.475612 eV Core-core repulsion = 19405.751352 eV Total energy + Delta-G solvation = -3376.724260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47671 -38.83550 -37.24110 -35.11761 -33.12412 -32.44564 -31.55950 -30.40343 -30.11037 -27.63906 -25.79983 -24.10698 -23.42913 -22.73263 -21.59910 -20.51419 -19.99603 -17.59834 -17.00037 -16.45566 -16.27543 -16.11954 -15.63738 -15.26652 -15.01219 -14.79042 -14.39209 -14.09455 -13.56652 -13.48454 -13.25313 -12.95087 -12.75461 -12.68032 -12.44518 -12.24770 -11.84884 -11.73119 -11.37106 -11.21010 -11.16307 -10.83380 -10.64604 -10.54415 -10.43923 -10.11901 -9.83045 -9.76971 -9.42923 -9.06043 -8.37809 -8.26587 -6.83257 -5.98195 -4.02736 2.09290 2.32535 3.34158 3.38071 3.41497 3.42178 3.53026 3.73606 4.25487 4.26946 4.36934 4.43286 4.59755 4.65108 4.86212 5.06159 5.11905 5.16882 5.29074 5.32915 5.34590 5.38211 5.48685 5.50967 5.56400 5.61825 5.65209 5.80370 6.01031 6.09469 6.29641 6.38250 6.68219 6.80376 6.82940 7.19244 7.27359 7.28751 7.36163 7.59459 7.75459 7.96206 7.96362 7.97191 8.40128 9.02841 9.60739 11.10348 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.002636 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.844262 B =10619.785653 C =10784.374294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.053 3.947 10 C -0.081 4.081 11 C -0.081 4.081 12 C -0.192 4.192 13 C 0.179 3.821 14 N -0.758 5.758 15 C 0.108 3.892 16 C 0.124 3.876 17 O -0.554 6.554 18 C -0.180 4.180 19 C 0.065 3.935 20 O -0.384 6.384 21 C 0.065 3.935 22 C -0.140 4.140 23 C -0.191 4.191 24 C -0.080 4.080 25 H 0.262 0.738 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.388 0.612 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.377 0.623 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.535 -21.108 1.259 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.083 4.083 11 C -0.100 4.100 12 C -0.214 4.214 13 C 0.080 3.920 14 N -0.393 5.393 15 C -0.017 4.017 16 C 0.083 3.917 17 O -0.360 6.360 18 C -0.218 4.218 19 C -0.012 4.012 20 O -0.303 6.303 21 C -0.012 4.012 22 C -0.178 4.178 23 C -0.214 4.214 24 C -0.099 4.099 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.223 0.777 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.225 0.775 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.655 -21.454 2.045 25.513 hybrid contribution 0.267 1.481 -0.889 1.748 sum 13.922 -19.973 1.156 24.374 Atomic orbital electron populations 1.69950 1.06009 1.26793 1.50781 1.25018 0.94865 0.99181 0.95360 0.86626 0.79544 0.82984 0.78684 1.20227 1.21286 1.20227 1.21088 0.93004 0.90103 1.50580 0.92628 1.18249 0.92504 0.89647 0.97997 1.20481 0.98961 0.97033 0.91794 1.20862 0.96062 0.94775 0.98286 1.20513 1.03897 1.01531 0.95468 1.17552 0.91398 0.88968 0.94060 1.44308 1.50810 1.37841 1.06345 1.21859 0.96816 0.95374 0.87701 1.21426 0.85218 0.91730 0.93315 1.86534 1.32400 1.77705 1.39353 1.22845 1.00408 0.97425 1.01133 1.22504 0.97575 0.95471 0.85641 1.87922 1.77682 1.38018 1.26682 1.22514 0.94393 0.89932 0.94375 1.22143 1.01892 0.98383 0.95385 1.20446 1.04094 1.01575 0.95250 1.20836 0.96089 0.94696 0.98293 0.92881 0.95664 0.95679 0.86590 0.87425 0.77705 0.91633 0.91804 0.77476 0.89738 0.90432 0.92618 0.88908 0.92244 0.88771 0.89677 0.89430 0.87480 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.05 1.38 5.10 -29.04 -0.15 1.23 16 10 C -0.08 -1.78 5.07 -104.59 -0.53 -2.31 16 11 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 12 C -0.19 -3.24 9.31 -39.38 -0.37 -3.60 16 13 C 0.18 2.77 6.65 -83.79 -0.56 2.21 16 14 N -0.76 -8.51 5.23 -58.63 -0.31 -8.82 16 15 C 0.11 1.07 4.09 -4.04 -0.02 1.05 16 16 C 0.12 1.02 0.72 -90.43 -0.07 0.95 16 17 O -0.55 -4.85 11.95 -35.23 -0.42 -5.27 16 18 C -0.18 -1.35 4.84 -26.58 -0.13 -1.47 16 19 C 0.06 0.50 6.69 37.21 0.25 0.75 16 20 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16 21 C 0.06 0.51 6.69 37.20 0.25 0.76 16 22 C -0.14 -1.08 5.15 -26.59 -0.14 -1.21 16 23 C -0.19 -3.15 9.90 -39.39 -0.39 -3.54 16 24 C -0.08 -1.58 9.69 -39.61 -0.38 -1.96 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.08 -51.93 -0.42 0.27 16 28 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.11 1.58 6.73 -52.49 -0.35 1.23 16 30 H 0.39 3.55 6.43 -40.82 -0.26 3.29 16 31 H 0.07 0.73 7.94 -51.93 -0.41 0.31 16 32 H 0.06 0.65 7.96 -51.93 -0.41 0.23 16 33 H 0.38 2.52 8.20 45.56 0.37 2.90 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.51 6.70 -51.93 -0.35 0.16 16 36 H 0.06 0.42 7.82 -51.93 -0.41 0.01 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.49 7.82 -51.93 -0.41 0.09 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -31.70 346.95 -9.17 -40.87 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.99 Total: 3.69 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -3.02 Total: -22.39 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.43 Total: -34.84 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.80 Total: -9.31 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.70 -9.17 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905543824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.418 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds