Wall clock time and date at job start Tue Mar 31 2020 07:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48495 * 109.47571 * 240.00244 * 3 2 1 5 5 H 1.48501 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47025 * 120.00300 * 3 2 1 7 7 C 1.37872 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00487 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47434 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.92533 * 90.00155 * 10 9 7 12 12 C 1.38104 * 120.07376 * 180.27908 * 11 10 9 13 13 C 1.38918 * 119.92017 * 359.44392 * 12 11 10 14 14 N 1.39675 * 120.07039 * 180.27814 * 13 12 11 15 15 C 1.46500 * 120.00199 * 0.25610 * 14 13 12 16 16 C 1.52998 * 109.47174 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.54907 * 64.99569 * 16 15 14 18 18 C 1.53180 * 109.54211 * 304.81704 * 16 15 14 19 19 C 1.53105 * 109.15932 * 183.24576 * 18 16 15 20 20 O 1.42903 * 109.48849 * 57.47207 * 19 18 16 21 21 C 1.42899 * 114.09749 * 298.89326 * 20 19 18 22 22 C 1.53092 * 109.41925 * 61.15979 * 21 20 19 23 23 C 1.38905 * 119.85223 * 0.52779 * 13 12 11 24 24 C 1.38099 * 119.92825 * 359.75374 * 23 13 12 25 25 H 0.96995 * 119.99967 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46701 * 59.99816 * 9 7 2 27 27 H 1.08997 * 109.46777 * 300.00602 * 9 7 2 28 28 H 1.08002 * 119.96057 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.04042 * 179.72222 * 12 11 10 30 30 H 0.96998 * 120.00193 * 180.24886 * 14 13 12 31 31 H 1.09005 * 109.46762 * 299.99634 * 15 14 13 32 32 H 1.09001 * 109.47248 * 59.99432 * 15 14 13 33 33 H 0.96700 * 113.99777 * 300.00732 * 17 16 15 34 34 H 1.09003 * 109.52356 * 303.06057 * 18 16 15 35 35 H 1.08993 * 109.52166 * 63.24701 * 18 16 15 36 36 H 1.09004 * 109.40426 * 297.49370 * 19 18 16 37 37 H 1.09000 * 109.49194 * 177.51256 * 19 18 16 38 38 H 1.08999 * 109.48260 * 301.16941 * 21 20 19 39 39 H 1.09004 * 109.48896 * 181.14613 * 21 20 19 40 40 H 1.08994 * 109.52632 * 182.48995 * 22 21 20 41 41 H 1.08997 * 109.57483 * 62.31985 * 22 21 20 42 42 H 1.08007 * 120.03682 * 179.76844 * 23 13 12 43 43 H 1.07997 * 119.96578 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6787 -4.1689 1.1980 12 6 3.5806 -5.2148 1.2015 13 6 4.0286 -5.7476 -0.0007 14 7 4.9362 -6.8093 -0.0007 15 6 5.4126 -7.3658 1.2680 16 6 6.3905 -8.5087 0.9884 17 8 7.5557 -7.9935 0.3413 18 6 5.7195 -9.5476 0.0846 19 6 6.6757 -10.7251 -0.1234 20 8 7.0317 -11.2799 1.1445 21 6 7.7056 -10.3665 2.0126 22 6 6.7900 -9.1757 2.3083 23 6 3.5758 -5.2189 -1.2027 24 6 2.6784 -4.1692 -1.1991 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.3269 -3.7568 2.1322 29 1 3.9338 -5.6210 2.1379 30 1 5.2511 -7.1782 -0.8407 31 1 5.9182 -6.5871 1.8393 32 1 4.5652 -7.7438 1.8400 33 1 7.3765 -7.5589 -0.5037 34 1 4.8032 -9.9030 0.5560 35 1 5.4829 -9.0943 -0.8779 36 1 7.5742 -10.3764 -0.6327 37 1 6.1870 -11.4878 -0.7297 38 1 8.6175 -10.0132 1.5313 39 1 7.9589 -10.8707 2.9452 40 1 7.3183 -8.4567 2.9344 41 1 5.8960 -9.5224 2.8265 42 1 3.9250 -5.6284 -2.1391 43 1 2.3263 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905543824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:47 Heat of formation + Delta-G solvation = -103.722334 kcal Electronic energy + Delta-G solvation = -22783.405051 eV Core-core repulsion = 19405.751352 eV Total energy + Delta-G solvation = -3377.653699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18494 -40.12488 -38.03197 -36.33476 -34.94013 -33.37265 -32.21127 -31.81383 -31.60768 -28.91365 -27.24047 -24.96821 -24.53953 -24.16529 -22.83407 -21.52377 -21.10652 -18.62319 -18.45521 -17.64182 -17.32771 -16.93352 -16.68329 -16.49983 -15.95185 -15.84310 -15.57306 -15.34144 -14.68231 -14.61516 -14.42338 -14.21469 -14.04150 -13.87858 -13.36445 -13.31209 -13.19211 -12.98280 -12.87507 -12.53786 -12.41185 -12.30335 -11.90855 -11.66970 -11.62545 -11.42093 -11.35680 -11.05014 -10.60964 -10.58270 -10.41644 -9.69446 -8.31972 -7.98586 -6.30747 0.66146 0.86822 1.39426 1.42329 1.50658 2.41025 2.44875 2.94956 3.11720 3.12272 3.17313 3.56976 3.64000 3.75564 4.01619 4.11424 4.22489 4.29490 4.44143 4.46565 4.50682 4.60219 4.64515 4.70326 4.72272 4.77180 4.78214 4.85569 4.99433 5.04970 5.05655 5.18651 5.22536 5.35883 5.39000 5.53916 5.69205 5.80160 5.98631 6.22693 6.23461 6.24390 6.51300 6.65466 6.82548 6.88870 7.37607 8.91442 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.002636 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.844262 B =10619.785653 C =10784.374294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.063 3.937 10 C -0.121 4.121 11 C -0.092 4.092 12 C -0.193 4.193 13 C 0.198 3.802 14 N -0.740 5.740 15 C 0.107 3.893 16 C 0.131 3.869 17 O -0.563 6.563 18 C -0.176 4.176 19 C 0.062 3.938 20 O -0.403 6.403 21 C 0.064 3.936 22 C -0.142 4.142 23 C -0.186 4.186 24 C -0.090 4.090 25 H 0.265 0.735 26 H -0.002 1.002 27 H -0.004 1.004 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.403 0.597 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.386 0.614 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.053 0.947 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.893 -22.390 1.002 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.123 4.123 11 C -0.110 4.110 12 C -0.215 4.215 13 C 0.096 3.904 14 N -0.374 5.374 15 C -0.018 4.018 16 C 0.090 3.910 17 O -0.371 6.371 18 C -0.214 4.214 19 C -0.015 4.015 20 O -0.322 6.322 21 C -0.013 4.013 22 C -0.180 4.180 23 C -0.208 4.208 24 C -0.109 4.109 25 H 0.074 0.926 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.126 0.874 29 H 0.150 0.850 30 H 0.240 0.760 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.046 -22.776 1.774 27.917 hybrid contribution -0.399 1.726 -0.801 1.944 sum 15.647 -21.050 0.973 26.247 Atomic orbital electron populations 1.70082 1.07682 1.27906 1.51586 1.25953 0.95782 1.03128 0.94742 0.85509 0.78306 0.78158 0.79142 1.19233 1.20530 1.19341 1.21422 0.93022 0.91505 1.50530 0.92928 1.17982 0.92835 0.91394 0.95194 1.20146 1.00587 0.97622 0.93922 1.20831 0.97114 0.95960 0.97134 1.20668 1.03025 1.00577 0.97251 1.17608 0.90648 0.88915 0.93198 1.44296 1.49071 1.36143 1.07925 1.21968 0.97288 0.95728 0.86832 1.21353 0.84693 0.91125 0.93812 1.86537 1.32656 1.77866 1.40008 1.22810 0.99988 0.97132 1.01445 1.22613 0.97773 0.95889 0.85197 1.87901 1.77882 1.38976 1.27466 1.22586 0.94020 0.89975 0.94713 1.22176 1.02192 0.98348 0.95253 1.20667 1.02770 1.00253 0.97157 1.20846 0.97083 0.95879 0.97096 0.92641 0.98371 0.98540 0.87449 0.85022 0.75964 0.92265 0.91411 0.76444 0.90176 0.89228 0.92499 0.87837 0.92854 0.87460 0.89385 0.88863 0.84022 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.53 -31.00 9.09 25.60 0.23 -30.77 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.06 3.50 5.10 29.10 0.15 3.65 16 10 C -0.12 -5.51 5.07 -19.84 -0.10 -5.61 16 11 C -0.09 -3.69 9.69 22.25 0.22 -3.47 16 12 C -0.19 -6.17 9.31 22.40 0.21 -5.96 16 13 C 0.20 5.55 6.65 38.21 0.25 5.80 16 14 N -0.74 -13.82 5.23 -339.41 -1.77 -15.59 16 15 C 0.11 1.76 4.09 86.38 0.35 2.11 16 16 C 0.13 1.76 0.72 -10.67 -0.01 1.75 16 17 O -0.56 -8.16 11.95 -148.98 -1.78 -9.94 16 18 C -0.18 -2.08 4.84 30.69 0.15 -1.93 16 19 C 0.06 0.79 6.69 72.02 0.48 1.28 16 20 O -0.40 -6.84 10.77 -148.98 -1.60 -8.45 16 21 C 0.06 0.87 6.69 72.01 0.48 1.35 16 22 C -0.14 -1.83 5.15 30.69 0.16 -1.67 16 23 C -0.19 -5.67 9.90 22.40 0.22 -5.45 16 24 C -0.09 -3.55 9.69 22.25 0.22 -3.34 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 27 H 0.00 -0.22 8.08 -2.39 -0.02 -0.24 16 28 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.13 3.53 6.73 -2.91 -0.02 3.51 16 30 H 0.40 5.55 6.43 -92.71 -0.60 4.96 16 31 H 0.06 1.12 7.94 -2.38 -0.02 1.10 16 32 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 33 H 0.39 3.82 8.20 -74.06 -0.61 3.22 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 0.83 6.70 -2.39 -0.02 0.82 16 36 H 0.06 0.72 7.82 -2.38 -0.02 0.70 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 0.79 7.82 -2.39 -0.02 0.77 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -70.20 346.95 0.44 -69.77 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.19 Total: 15.94 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.47 Total: -41.70 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.49 Total: -72.78 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -3.38 Total: -18.39 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.20 0.44 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905543824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.953 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds