Wall clock time and date at job start Tue Mar 31 2020 07:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99979 * 2 1 4 4 H 1.09006 * 109.47015 * 305.00001 * 3 2 1 5 5 C 1.52997 * 109.47319 * 65.00239 * 3 2 1 6 6 C 1.53000 * 109.47192 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47033 * 299.99754 * 6 5 3 8 8 C 1.52997 * 109.46930 * 60.00086 * 7 6 5 9 9 H 1.09006 * 109.47271 * 60.00105 * 8 7 6 10 10 N 1.46500 * 109.47097 * 180.02562 * 8 7 6 11 11 C 1.38862 * 120.00094 * 275.00179 * 10 8 7 12 12 C 1.39569 * 119.84086 * 359.72229 * 11 10 8 13 13 C 1.36338 * 120.16101 * 179.76089 * 12 11 10 14 14 C 1.40884 * 119.83597 * 0.49354 * 13 12 11 15 15 C 1.41133 * 120.15815 * 179.78451 * 14 13 12 16 16 H 1.07999 * 119.99980 * 24.58206 * 15 14 13 17 17 C 1.39868 * 120.00263 * 204.58469 * 15 14 13 18 18 N 1.30901 * 119.99926 * 17.97049 * 17 15 14 19 19 Si 1.86801 * 119.99909 * 197.97394 * 17 15 14 20 20 H 1.48501 * 109.47221 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47044 * 119.99706 * 19 17 15 22 22 H 1.48499 * 109.46878 * 239.99874 * 19 17 15 23 23 C 1.40887 * 119.69127 * 359.76090 * 14 13 12 24 24 C 1.36351 * 119.83422 * 359.97438 * 23 14 13 25 25 C 1.53000 * 109.47192 * 299.99817 * 8 7 6 26 26 H 1.08993 * 109.47157 * 60.00060 * 1 2 3 27 27 H 1.09001 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46817 * 299.99584 * 1 2 3 29 29 H 1.09005 * 109.46811 * 299.99963 * 5 3 2 30 30 H 1.08997 * 109.47009 * 60.00028 * 5 3 2 31 31 H 1.09006 * 109.47168 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47290 * 59.99992 * 6 5 3 33 33 H 1.09006 * 109.47058 * 300.00060 * 7 6 5 34 34 H 1.08997 * 109.47239 * 180.02562 * 7 6 5 35 35 H 0.97000 * 120.00158 * 94.99417 * 10 8 7 36 36 H 1.08000 * 119.91720 * 0.02562 * 12 11 10 37 37 H 1.07998 * 120.08164 * 180.27773 * 13 12 11 38 38 H 0.96998 * 119.99991 * 180.02562 * 18 17 15 39 39 H 1.07991 * 120.08657 * 180.02562 * 23 14 13 40 40 H 1.07996 * 119.91830 * 179.97438 * 24 23 14 41 41 H 1.08997 * 109.47290 * 300.00008 * 25 8 7 42 42 H 1.09006 * 109.47168 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7429 2.4016 1.3073 6 6 2.0865 3.8925 1.3070 7 6 3.6013 4.0667 1.1810 8 6 4.0805 3.4326 -0.1263 9 1 3.5876 3.9190 -0.9682 10 7 5.5311 3.5989 -0.2468 11 6 6.0539 4.7703 -0.7784 12 6 5.1943 5.7848 -1.2024 13 6 5.7007 6.9396 -1.7209 14 6 7.0951 7.1031 -1.8378 15 6 7.6266 8.2939 -2.3778 16 1 7.0539 9.2085 -2.3357 17 6 8.8949 8.2894 -2.9674 18 7 9.4400 7.1587 -3.3389 19 14 9.8110 9.8969 -3.2247 20 1 8.9839 11.0237 -2.7232 21 1 11.0970 9.8579 -2.4832 22 1 10.0799 10.0870 -4.6727 23 6 7.9567 6.0726 -1.4127 24 6 7.4364 4.9253 -0.8911 25 6 3.7369 1.9417 -0.1260 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.6636 2.2778 1.3969 30 1 2.2355 1.9150 2.1491 31 1 1.7447 4.3444 2.2383 32 1 1.5935 4.3788 0.4653 33 1 4.0943 3.5804 2.0228 34 1 3.8462 5.1288 1.1812 35 1 6.1263 2.8907 0.0450 36 1 4.1255 5.6565 -1.1156 37 1 5.0345 7.7256 -2.0445 38 1 10.3197 7.1556 -3.7475 39 1 9.0266 6.1914 -1.4990 40 1 8.0955 4.1344 -0.5652 41 1 4.2299 1.4554 0.7157 42 1 4.0787 1.4898 -1.0573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921566365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:25 Heat of formation + Delta-G solvation = 0.725209 kcal Electronic energy + Delta-G solvation = -20545.077273 eV Core-core repulsion = 17614.705631 eV Total energy + Delta-G solvation = -2930.371642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.08923 -37.42331 -34.61484 -32.84829 -30.94263 -30.22114 -29.35848 -28.89752 -27.70338 -24.36745 -22.82588 -22.40643 -20.94351 -20.15533 -19.67456 -17.18977 -16.69594 -16.07020 -15.46891 -15.15901 -14.67484 -14.56627 -14.27252 -13.83326 -13.81589 -13.63145 -13.22473 -12.89604 -12.54900 -12.45085 -12.12451 -12.00750 -11.87588 -11.65002 -11.33760 -11.19772 -11.03929 -10.87918 -10.78000 -10.67286 -10.43430 -10.36231 -9.84937 -9.63789 -9.28558 -9.20198 -8.52535 -7.89897 -7.47535 -6.63470 -6.37900 -4.02075 1.46157 2.36348 2.91132 3.11310 3.16129 3.21427 3.35979 4.06197 4.12487 4.47703 4.73652 4.77253 4.84252 4.85922 4.97105 5.06761 5.13326 5.28297 5.34456 5.39197 5.43504 5.56940 5.81042 5.84093 5.89912 5.92870 6.01936 6.16362 6.27006 6.30763 6.37096 6.49183 6.88507 7.07715 7.21669 7.32706 7.61408 7.68093 7.81470 8.16558 8.35469 8.50840 8.69507 8.81853 9.07384 9.16634 10.38328 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.041081 B = 0.002844 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.423290 B = 9843.306352 C =10089.958970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.270 6.270 3 C -0.043 4.043 4 H 0.088 0.912 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.172 3.828 9 H 0.072 0.928 10 N -0.756 5.756 11 C 0.094 3.906 12 C -0.160 4.160 13 C -0.189 4.189 14 C 0.075 3.925 15 C -0.467 4.467 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.807 5.807 19 Si 0.902 3.098 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.123 4.123 24 C -0.163 4.163 25 C -0.105 4.105 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.384 0.616 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.275 0.725 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.628 -10.440 7.446 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.172 4.172 4 H 0.107 0.893 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.176 4.176 8 C 0.063 3.937 9 H 0.090 0.910 10 N -0.390 5.390 11 C -0.003 4.003 12 C -0.182 4.182 13 C -0.209 4.209 14 C 0.072 3.928 15 C -0.498 4.498 16 H 0.090 0.910 17 C -0.141 4.141 18 N -0.435 5.435 19 Si 0.727 3.273 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.143 4.143 24 C -0.185 4.185 25 C -0.144 4.144 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.217 0.783 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.929 -11.390 7.264 18.699 hybrid contribution -0.183 1.383 -0.153 1.403 sum -13.111 -10.007 7.111 17.962 Atomic orbital electron populations 1.23373 0.94490 1.06223 1.04888 1.86896 1.07084 1.12149 1.97941 1.23140 1.00168 0.92572 1.01320 0.89348 1.21874 1.00467 0.96400 0.96419 1.21536 0.96937 0.94978 1.02028 1.22106 0.94332 1.02331 0.98794 1.20489 0.83472 0.92848 0.96850 0.90979 1.43897 1.03420 1.18211 1.73444 1.17326 0.91981 0.87635 1.03340 1.19878 0.96286 0.95083 1.06914 1.20552 0.95122 0.97197 1.08070 1.17496 0.90491 0.93333 0.91517 1.19392 1.00429 0.96034 1.33919 0.90951 1.25797 0.97506 0.97322 0.93460 1.69863 1.15727 1.27250 1.30648 0.86377 0.79716 0.82920 0.78310 1.18650 1.19968 1.20294 1.20924 0.99942 0.93627 0.99828 1.20046 0.92055 0.99087 1.07292 1.21597 0.92029 0.97426 1.03377 0.90566 0.88328 0.90500 0.92181 0.90737 0.91627 0.91884 0.92045 0.90955 0.78316 0.89403 0.89204 0.91388 0.86371 0.89563 0.90950 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.45 101.05 1.06 0.17 16 2 S -0.27 -2.82 21.79 -107.50 -2.34 -5.16 16 3 C -0.04 -0.44 2.65 -26.73 -0.07 -0.51 16 4 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 5 C -0.11 -1.04 5.11 -26.73 -0.14 -1.17 16 6 C -0.11 -1.16 5.92 -26.73 -0.16 -1.32 16 7 C -0.14 -1.74 5.42 -26.73 -0.15 -1.88 16 8 C 0.17 2.40 2.14 -67.93 -0.15 2.25 16 9 H 0.07 1.10 6.44 -51.93 -0.33 0.77 16 10 N -0.76 -12.80 5.22 -52.03 -0.27 -13.07 16 11 C 0.09 2.01 6.65 -83.69 -0.56 1.45 16 12 C -0.16 -3.53 8.76 -39.77 -0.35 -3.88 16 13 C -0.19 -4.67 9.74 -39.27 -0.38 -5.06 16 14 C 0.07 2.02 5.57 -106.80 -0.60 1.42 16 15 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 16 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 17 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 18 N -0.81 -21.54 10.96 55.54 0.61 -20.93 16 19 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.12 -3.23 8.64 -39.26 -0.34 -3.57 16 24 C -0.16 -3.79 9.82 -39.77 -0.39 -4.19 16 25 C -0.10 -1.24 4.68 -26.73 -0.13 -1.37 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.08 0.50 7.14 -51.92 -0.37 0.12 16 29 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.08 7.69 -51.93 -0.40 0.68 16 35 H 0.38 5.98 8.60 -40.82 -0.35 5.63 16 36 H 0.09 1.73 6.06 -52.49 -0.32 1.41 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -27.92 343.22 -11.29 -39.21 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.66 Total: 9.38 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -2.77 Total: -28.87 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.34 Total: -34.00 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.34 Total: -5.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.92 -11.29 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.936 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds