Wall clock time and date at job start Tue Mar 31 2020 07:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99979 * 2 1 4 4 H 1.09006 * 109.47015 * 305.00001 * 3 2 1 5 5 C 1.52997 * 109.47319 * 65.00239 * 3 2 1 6 6 C 1.53000 * 109.47192 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47033 * 299.99754 * 6 5 3 8 8 C 1.52997 * 109.46930 * 60.00086 * 7 6 5 9 9 H 1.09006 * 109.47271 * 60.00105 * 8 7 6 10 10 N 1.46500 * 109.47097 * 180.02562 * 8 7 6 11 11 C 1.38862 * 120.00094 * 275.00179 * 10 8 7 12 12 C 1.39569 * 119.84086 * 359.72229 * 11 10 8 13 13 C 1.36338 * 120.16101 * 179.76089 * 12 11 10 14 14 C 1.40884 * 119.83597 * 0.49354 * 13 12 11 15 15 C 1.41133 * 120.15815 * 179.78451 * 14 13 12 16 16 H 1.07999 * 119.99980 * 24.58206 * 15 14 13 17 17 C 1.39868 * 120.00263 * 204.58469 * 15 14 13 18 18 N 1.30901 * 119.99926 * 17.97049 * 17 15 14 19 19 Si 1.86801 * 119.99909 * 197.97394 * 17 15 14 20 20 H 1.48501 * 109.47221 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47044 * 119.99706 * 19 17 15 22 22 H 1.48499 * 109.46878 * 239.99874 * 19 17 15 23 23 C 1.40887 * 119.69127 * 359.76090 * 14 13 12 24 24 C 1.36351 * 119.83422 * 359.97438 * 23 14 13 25 25 C 1.53000 * 109.47192 * 299.99817 * 8 7 6 26 26 H 1.08993 * 109.47157 * 60.00060 * 1 2 3 27 27 H 1.09001 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46817 * 299.99584 * 1 2 3 29 29 H 1.09005 * 109.46811 * 299.99963 * 5 3 2 30 30 H 1.08997 * 109.47009 * 60.00028 * 5 3 2 31 31 H 1.09006 * 109.47168 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47290 * 59.99992 * 6 5 3 33 33 H 1.09006 * 109.47058 * 300.00060 * 7 6 5 34 34 H 1.08997 * 109.47239 * 180.02562 * 7 6 5 35 35 H 0.97000 * 120.00158 * 94.99417 * 10 8 7 36 36 H 1.08000 * 119.91720 * 0.02562 * 12 11 10 37 37 H 1.07998 * 120.08164 * 180.27773 * 13 12 11 38 38 H 0.96998 * 119.99991 * 180.02562 * 18 17 15 39 39 H 1.07991 * 120.08657 * 180.02562 * 23 14 13 40 40 H 1.07996 * 119.91830 * 179.97438 * 24 23 14 41 41 H 1.08997 * 109.47290 * 300.00008 * 25 8 7 42 42 H 1.09006 * 109.47168 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7429 2.4016 1.3073 6 6 2.0865 3.8925 1.3070 7 6 3.6013 4.0667 1.1810 8 6 4.0805 3.4326 -0.1263 9 1 3.5876 3.9190 -0.9682 10 7 5.5311 3.5989 -0.2468 11 6 6.0539 4.7703 -0.7784 12 6 5.1943 5.7848 -1.2024 13 6 5.7007 6.9396 -1.7209 14 6 7.0951 7.1031 -1.8378 15 6 7.6266 8.2939 -2.3778 16 1 7.0539 9.2085 -2.3357 17 6 8.8949 8.2894 -2.9674 18 7 9.4400 7.1587 -3.3389 19 14 9.8110 9.8969 -3.2247 20 1 8.9839 11.0237 -2.7232 21 1 11.0970 9.8579 -2.4832 22 1 10.0799 10.0870 -4.6727 23 6 7.9567 6.0726 -1.4127 24 6 7.4364 4.9253 -0.8911 25 6 3.7369 1.9417 -0.1260 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.6636 2.2778 1.3969 30 1 2.2355 1.9150 2.1491 31 1 1.7447 4.3444 2.2383 32 1 1.5935 4.3788 0.4653 33 1 4.0943 3.5804 2.0228 34 1 3.8462 5.1288 1.1812 35 1 6.1263 2.8907 0.0450 36 1 4.1255 5.6565 -1.1156 37 1 5.0345 7.7256 -2.0445 38 1 10.3197 7.1556 -3.7475 39 1 9.0266 6.1914 -1.4990 40 1 8.0955 4.1344 -0.5652 41 1 4.2299 1.4554 0.7157 42 1 4.0787 1.4898 -1.0573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921566365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:19 Heat of formation + Delta-G solvation = -12.266668 kcal Electronic energy + Delta-G solvation = -20545.640643 eV Core-core repulsion = 17614.705631 eV Total energy + Delta-G solvation = -2930.935012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 5.98 seconds Orbital eigenvalues (eV) -40.37088 -38.99361 -36.21193 -34.54655 -31.88003 -31.75734 -30.95585 -29.86652 -29.09656 -26.14864 -23.88314 -23.64345 -22.53410 -21.78856 -20.82791 -19.10849 -17.78352 -17.56174 -17.00745 -16.33507 -16.00111 -15.61704 -15.37463 -15.25073 -14.79859 -14.54363 -14.34514 -14.21534 -14.06828 -13.83562 -13.64001 -13.35944 -13.25080 -12.84622 -12.76318 -12.68089 -12.49288 -12.31418 -12.12387 -11.80098 -11.57812 -11.54962 -11.35019 -11.15018 -11.01286 -10.67977 -10.23975 -9.38615 -8.68645 -8.54600 -8.15154 -5.99664 0.71927 1.10654 1.19881 1.40281 1.54544 1.58650 1.66676 2.27749 2.82144 2.85766 3.64376 3.80109 3.86732 3.94272 4.16618 4.19266 4.33256 4.36662 4.37427 4.40757 4.43746 4.47930 4.55532 4.63964 4.88339 4.91558 5.01449 5.03479 5.08734 5.10775 5.19223 5.24564 5.30309 5.37885 5.42375 5.47802 5.75679 5.79838 5.94236 6.19822 6.42349 6.69284 6.89907 7.09526 7.14689 7.31625 8.48936 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.041081 B = 0.002844 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.423290 B = 9843.306352 C =10089.958970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.312 6.312 3 C -0.035 4.035 4 H 0.089 0.911 5 C -0.105 4.105 6 C -0.109 4.109 7 C -0.131 4.131 8 C 0.170 3.830 9 H 0.062 0.938 10 N -0.748 5.748 11 C 0.118 3.882 12 C -0.164 4.164 13 C -0.197 4.197 14 C 0.035 3.965 15 C -0.505 4.505 16 H 0.067 0.933 17 C 0.031 3.969 18 N -0.842 5.842 19 Si 0.976 3.024 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.143 4.143 24 C -0.176 4.176 25 C -0.095 4.095 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.393 0.607 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.282 0.718 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.532 -11.339 8.393 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.083 6.083 3 C -0.164 4.164 4 H 0.108 0.892 5 C -0.144 4.144 6 C -0.149 4.149 7 C -0.170 4.170 8 C 0.063 3.937 9 H 0.080 0.920 10 N -0.381 5.381 11 C 0.018 3.982 12 C -0.186 4.186 13 C -0.217 4.217 14 C 0.032 3.968 15 C -0.536 4.536 16 H 0.085 0.915 17 C -0.181 4.181 18 N -0.470 5.470 19 Si 0.798 3.202 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.194 1.194 23 C -0.163 4.163 24 C -0.198 4.198 25 C -0.135 4.135 26 H 0.101 0.899 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.227 0.773 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.866 -12.330 8.232 20.995 hybrid contribution 0.247 1.466 -0.378 1.534 sum -14.620 -10.864 7.854 19.835 Atomic orbital electron populations 1.23443 0.91189 1.07345 1.05879 1.87060 1.10778 1.12403 1.98061 1.23039 0.98703 0.92557 1.02095 0.89237 1.21831 1.01650 0.95339 0.95592 1.21498 0.94590 0.95863 1.02935 1.22012 0.96573 1.00590 0.97848 1.20660 0.81261 0.94592 0.97232 0.91986 1.44002 1.05214 1.16795 1.72129 1.17401 0.91331 0.88584 1.00872 1.20111 0.97819 0.94329 1.06310 1.20756 0.94521 0.98340 1.08126 1.17811 0.91736 0.94083 0.93153 1.19601 1.01999 0.96141 1.35874 0.91505 1.26615 0.97832 1.00949 0.92698 1.69925 1.16325 1.29319 1.31474 0.85258 0.78231 0.78231 0.78510 1.18436 1.19151 1.19387 1.20857 0.99097 0.94932 1.01395 1.20238 0.93412 0.98793 1.07351 1.21455 0.93593 0.95390 1.03020 0.89859 0.87182 0.89189 0.90250 0.90781 0.90214 0.91609 0.91790 0.93199 0.77264 0.86697 0.88726 0.90799 0.88316 0.87650 0.90602 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.45 113.37 1.19 -0.07 16 2 S -0.31 -5.82 21.79 -56.49 -1.23 -7.05 16 3 C -0.03 -0.63 2.65 30.59 0.08 -0.55 16 4 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.10 -1.59 5.11 30.59 0.16 -1.43 16 6 C -0.11 -1.87 5.92 30.60 0.18 -1.69 16 7 C -0.13 -3.07 5.42 30.59 0.17 -2.90 16 8 C 0.17 4.42 2.14 44.99 0.10 4.52 16 9 H 0.06 1.78 6.44 -2.38 -0.02 1.76 16 10 N -0.75 -24.21 5.22 -318.53 -1.66 -25.87 16 11 C 0.12 4.95 6.65 38.67 0.26 5.21 16 12 C -0.16 -7.16 8.76 22.15 0.19 -6.97 16 13 C -0.20 -9.94 9.74 22.47 0.22 -9.72 16 14 C 0.03 1.97 5.57 -21.27 -0.12 1.85 16 15 C -0.50 -28.65 9.03 23.38 0.21 -28.44 16 16 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 17 C 0.03 1.64 5.13 85.23 0.44 2.08 16 18 N -0.84 -46.47 10.96 21.82 0.24 -46.23 16 19 Si 0.98 40.52 29.60 68.60 2.03 42.55 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 23 C -0.14 -7.77 8.64 22.48 0.19 -7.57 16 24 C -0.18 -8.26 9.82 22.15 0.22 -8.04 16 25 C -0.10 -2.07 4.68 30.60 0.14 -1.93 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 0.81 7.14 -2.39 -0.02 0.80 16 29 H 0.08 0.95 6.92 -2.38 -0.02 0.93 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.41 7.69 -2.39 -0.02 1.39 16 35 H 0.39 11.55 8.60 -92.71 -0.80 10.75 16 36 H 0.12 4.35 6.06 -2.91 -0.02 4.33 16 37 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.28 14.11 8.30 -92.71 -0.77 13.35 16 39 H 0.10 5.66 6.16 -2.92 -0.02 5.65 16 40 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -62.25 343.22 3.20 -59.05 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.21 Total: 33.22 kcal Atomic # 6 Polarization: -59.29 SS G_CDS: 3.62 Total: -55.67 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -1.42 Total: -72.10 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.23 Total: -7.05 kcal Total: -62.25 3.20 -59.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.781 kcal (2) G-P(sol) polarization free energy of solvation -62.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.98 seconds