Wall clock time and date at job start Tue Mar 31 2020 07:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81403 * 103.00111 * 2 1 4 4 H 1.08997 * 109.47443 * 305.00384 * 3 2 1 5 5 C 1.52999 * 109.46637 * 65.00649 * 3 2 1 6 6 C 1.53004 * 109.47005 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46718 * 299.99313 * 6 5 3 8 8 C 1.52999 * 109.47226 * 60.00213 * 7 6 5 9 9 H 1.08993 * 109.47597 * 179.97438 * 8 7 6 10 10 N 1.46508 * 109.46961 * 59.99510 * 8 7 6 11 11 C 1.38857 * 119.99445 * 85.00254 * 10 8 7 12 12 C 1.39570 * 119.83886 * 180.02562 * 11 10 8 13 13 C 1.36337 * 120.16054 * 180.02562 * 12 11 10 14 14 C 1.40885 * 119.83734 * 0.02562 * 13 12 11 15 15 C 1.41138 * 120.15330 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00239 * 334.93742 * 15 14 13 17 17 C 1.39871 * 119.99733 * 154.93693 * 15 14 13 18 18 N 1.30900 * 119.99902 * 342.57032 * 17 15 14 19 19 Si 1.86801 * 119.99901 * 162.57349 * 17 15 14 20 20 H 1.48493 * 109.47039 * 265.59455 * 19 17 15 21 21 H 1.48497 * 109.46882 * 145.59438 * 19 17 15 22 22 H 1.48503 * 109.47139 * 25.59611 * 19 17 15 23 23 C 1.40882 * 119.69103 * 0.27294 * 14 13 12 24 24 C 1.36345 * 119.83108 * 359.42363 * 23 14 13 25 25 C 1.52998 * 109.47060 * 184.99946 * 3 2 1 26 26 H 1.09000 * 109.47639 * 59.99301 * 1 2 3 27 27 H 1.09002 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47049 * 299.99923 * 1 2 3 29 29 H 1.09001 * 109.47900 * 59.99659 * 5 3 2 30 30 H 1.09004 * 109.47024 * 299.99337 * 5 3 2 31 31 H 1.09005 * 109.47051 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47416 * 59.99525 * 6 5 3 33 33 H 1.08997 * 109.47350 * 300.00253 * 7 6 5 34 34 H 1.08996 * 109.47131 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99923 * 265.00363 * 10 8 7 36 36 H 1.08004 * 119.91868 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08277 * 179.97438 * 13 12 11 38 38 H 0.97003 * 120.00217 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.08471 * 179.72770 * 23 14 13 40 40 H 1.08000 * 119.91712 * 180.31763 * 24 23 14 41 41 H 1.09005 * 109.46759 * 60.00798 * 25 3 2 42 42 H 1.08997 * 109.47350 * 300.00495 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 -0.8417 5 6 1.7429 2.4014 1.3074 6 6 2.0865 3.8924 1.3073 7 6 3.6013 4.0665 1.1813 8 6 4.0806 3.4326 -0.1261 9 1 5.1596 3.5570 -0.2161 10 7 3.4180 4.0863 -1.2575 11 6 3.9436 5.2571 -1.7877 12 6 3.3094 5.8774 -2.8652 13 6 3.8201 7.0269 -3.3913 14 6 4.9912 7.5881 -2.8449 15 6 5.5253 8.7781 -3.3840 16 1 5.3210 9.0454 -4.4102 17 6 6.3192 9.6112 -2.5890 18 7 6.2954 9.4893 -1.2859 19 14 7.4134 10.8979 -3.3869 20 1 8.7785 10.3426 -3.5691 21 1 7.4798 12.0995 -2.5170 22 1 6.8517 11.2744 -4.7090 23 6 5.6295 6.9530 -1.7614 24 6 5.1040 5.8073 -1.2415 25 6 3.7369 1.9412 -0.1257 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2355 1.9148 2.1493 30 1 0.6636 2.2778 1.3970 31 1 1.7455 4.3440 2.2390 32 1 1.5936 4.3788 0.4656 33 1 4.0942 3.5802 2.0230 34 1 3.8461 5.1287 1.1807 35 1 2.6122 3.7013 -1.6361 36 1 2.4119 5.4459 -3.2833 37 1 3.3285 7.5057 -4.2253 38 1 6.8463 10.0668 -0.7346 39 1 6.5300 7.3752 -1.3406 40 1 5.5894 5.3221 -0.4076 41 1 4.0783 1.4895 -1.0572 42 1 4.2296 1.4545 0.7160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921566367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:32 Heat of formation + Delta-G solvation = 3.841336 kcal Electronic energy + Delta-G solvation = -20888.296883 eV Core-core repulsion = 17958.060366 eV Total energy + Delta-G solvation = -2930.236517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28635 -37.34416 -34.31569 -32.69775 -30.88511 -30.18568 -29.42671 -28.94815 -27.81078 -24.33247 -22.74204 -22.65478 -20.93425 -20.55138 -18.71257 -17.20213 -16.99495 -15.93217 -15.40903 -15.14828 -14.95038 -14.49064 -14.06680 -13.89247 -13.70666 -13.43953 -13.10032 -12.87154 -12.66170 -12.26163 -12.13604 -12.03759 -11.89217 -11.62920 -11.45731 -11.31205 -11.04018 -10.85811 -10.65826 -10.52028 -10.49498 -10.11082 -9.79894 -9.66704 -9.27047 -9.20613 -8.51618 -7.86272 -7.48256 -6.62907 -6.37069 -4.02444 1.51757 2.40288 2.92245 3.10790 3.15987 3.19616 3.36444 4.06419 4.26757 4.55233 4.57902 4.77725 4.89383 4.90193 4.98994 5.15395 5.23657 5.32863 5.39711 5.45811 5.57418 5.65079 5.83696 5.88546 5.91844 5.95614 6.15310 6.23872 6.27728 6.38071 6.41016 6.49163 6.94413 6.96119 7.21367 7.36844 7.57115 7.69923 7.84989 8.16544 8.30447 8.50928 8.70565 8.81158 9.07395 9.16385 10.38869 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038278 B = 0.003154 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.319706 B = 8875.721632 C = 9143.760960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.275 6.275 3 C -0.043 4.043 4 H 0.086 0.914 5 C -0.111 4.111 6 C -0.110 4.110 7 C -0.137 4.137 8 C 0.170 3.830 9 H 0.078 0.922 10 N -0.753 5.753 11 C 0.096 3.904 12 C -0.160 4.160 13 C -0.186 4.186 14 C 0.074 3.926 15 C -0.468 4.468 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.809 5.809 19 Si 0.902 3.098 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.264 1.264 23 C -0.123 4.123 24 C -0.164 4.164 25 C -0.104 4.104 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.380 0.620 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.275 0.725 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -13.831 5.893 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.172 4.172 4 H 0.104 0.896 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.177 4.177 8 C 0.061 3.939 9 H 0.096 0.904 10 N -0.388 5.388 11 C -0.001 4.001 12 C -0.183 4.183 13 C -0.206 4.206 14 C 0.071 3.929 15 C -0.499 4.499 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.436 5.436 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.143 4.143 24 C -0.186 4.186 25 C -0.144 4.144 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.214 0.786 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.618 -14.658 6.203 17.238 hybrid contribution -0.764 1.552 -0.396 1.775 sum -7.382 -13.106 5.806 16.124 Atomic orbital electron populations 1.23362 0.94472 1.06145 1.04918 1.86824 1.07181 1.12622 1.97949 1.23177 1.00604 0.92105 1.01287 0.89551 1.21860 1.00327 0.96667 0.96171 1.21445 0.97049 0.94522 1.01967 1.22060 0.95577 1.02349 0.97682 1.20559 0.97483 0.89217 0.86630 0.90366 1.43982 1.31099 1.27167 1.36587 1.17327 0.96571 0.89270 0.96930 1.19791 1.00596 0.98761 0.99115 1.20541 0.98151 0.98363 1.03580 1.17487 0.90385 0.92685 0.92303 1.19379 1.27398 1.04578 0.98538 0.91004 1.25782 0.95961 0.97838 0.94450 1.69852 1.33424 1.35673 1.04668 0.86403 0.80829 0.79888 0.80116 1.19630 1.20585 1.18853 1.20933 1.00384 0.93918 0.99081 1.20110 0.97314 0.99057 1.02097 1.21659 0.92190 0.97169 1.03342 0.90585 0.88388 0.90519 0.90938 0.92414 0.92152 0.91379 0.92133 0.90807 0.78608 0.89822 0.89186 0.91390 0.86505 0.89270 0.90627 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.45 101.05 1.06 0.10 16 2 S -0.27 -2.95 21.79 -107.50 -2.34 -5.30 16 3 C -0.04 -0.47 2.48 -26.73 -0.07 -0.53 16 4 H 0.09 0.98 6.50 -51.93 -0.34 0.64 16 5 C -0.11 -1.13 5.11 -26.73 -0.14 -1.27 16 6 C -0.11 -1.31 5.77 -26.73 -0.15 -1.46 16 7 C -0.14 -1.82 5.53 -26.73 -0.15 -1.97 16 8 C 0.17 2.36 2.47 -67.90 -0.17 2.20 16 9 H 0.08 1.19 6.44 -51.93 -0.33 0.86 16 10 N -0.75 -12.27 4.37 -52.01 -0.23 -12.49 16 11 C 0.10 2.01 6.65 -83.69 -0.56 1.45 16 12 C -0.16 -3.55 9.82 -39.77 -0.39 -3.94 16 13 C -0.19 -4.59 9.74 -39.27 -0.38 -4.97 16 14 C 0.07 2.00 5.57 -106.80 -0.59 1.40 16 15 C -0.47 -12.71 9.03 -37.87 -0.34 -13.06 16 16 H 0.07 1.90 7.90 -52.49 -0.41 1.48 16 17 C 0.07 1.93 5.14 -17.34 -0.09 1.84 16 18 N -0.81 -21.44 10.98 55.54 0.61 -20.83 16 19 Si 0.90 19.31 29.59 -169.99 -5.03 14.27 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.12 -3.19 8.63 -39.26 -0.34 -3.53 16 24 C -0.16 -3.72 8.74 -39.77 -0.35 -4.07 16 25 C -0.10 -1.22 4.90 -26.71 -0.13 -1.35 16 26 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.08 0.56 7.14 -51.92 -0.37 0.19 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.18 7.66 -51.93 -0.40 0.78 16 35 H 0.38 5.70 6.86 -40.82 -0.28 5.42 16 36 H 0.08 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.12 3.15 6.19 -52.49 -0.33 2.83 16 40 H 0.09 1.84 6.05 -52.49 -0.32 1.52 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -27.40 338.77 -11.15 -38.55 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.47 Total: 9.85 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.79 Total: -29.16 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.38 Total: -33.32 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.34 Total: -5.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.40 -11.15 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.389 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds