Wall clock time and date at job start Tue Mar 31 2020 07:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81403 * 103.00111 * 2 1 4 4 H 1.08997 * 109.47443 * 305.00384 * 3 2 1 5 5 C 1.52999 * 109.46637 * 65.00649 * 3 2 1 6 6 C 1.53004 * 109.47005 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46718 * 299.99313 * 6 5 3 8 8 C 1.52999 * 109.47226 * 60.00213 * 7 6 5 9 9 H 1.08993 * 109.47597 * 179.97438 * 8 7 6 10 10 N 1.46508 * 109.46961 * 59.99510 * 8 7 6 11 11 C 1.38857 * 119.99445 * 85.00254 * 10 8 7 12 12 C 1.39570 * 119.83886 * 180.02562 * 11 10 8 13 13 C 1.36337 * 120.16054 * 180.02562 * 12 11 10 14 14 C 1.40885 * 119.83734 * 0.02562 * 13 12 11 15 15 C 1.41138 * 120.15330 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00239 * 334.93742 * 15 14 13 17 17 C 1.39871 * 119.99733 * 154.93693 * 15 14 13 18 18 N 1.30900 * 119.99902 * 342.57032 * 17 15 14 19 19 Si 1.86801 * 119.99901 * 162.57349 * 17 15 14 20 20 H 1.48493 * 109.47039 * 265.59455 * 19 17 15 21 21 H 1.48497 * 109.46882 * 145.59438 * 19 17 15 22 22 H 1.48503 * 109.47139 * 25.59611 * 19 17 15 23 23 C 1.40882 * 119.69103 * 0.27294 * 14 13 12 24 24 C 1.36345 * 119.83108 * 359.42363 * 23 14 13 25 25 C 1.52998 * 109.47060 * 184.99946 * 3 2 1 26 26 H 1.09000 * 109.47639 * 59.99301 * 1 2 3 27 27 H 1.09002 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47049 * 299.99923 * 1 2 3 29 29 H 1.09001 * 109.47900 * 59.99659 * 5 3 2 30 30 H 1.09004 * 109.47024 * 299.99337 * 5 3 2 31 31 H 1.09005 * 109.47051 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47416 * 59.99525 * 6 5 3 33 33 H 1.08997 * 109.47350 * 300.00253 * 7 6 5 34 34 H 1.08996 * 109.47131 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99923 * 265.00363 * 10 8 7 36 36 H 1.08004 * 119.91868 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08277 * 179.97438 * 13 12 11 38 38 H 0.97003 * 120.00217 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.08471 * 179.72770 * 23 14 13 40 40 H 1.08000 * 119.91712 * 180.31763 * 24 23 14 41 41 H 1.09005 * 109.46759 * 60.00798 * 25 3 2 42 42 H 1.08997 * 109.47350 * 300.00495 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 -0.8417 5 6 1.7429 2.4014 1.3074 6 6 2.0865 3.8924 1.3073 7 6 3.6013 4.0665 1.1813 8 6 4.0806 3.4326 -0.1261 9 1 5.1596 3.5570 -0.2161 10 7 3.4180 4.0863 -1.2575 11 6 3.9436 5.2571 -1.7877 12 6 3.3094 5.8774 -2.8652 13 6 3.8201 7.0269 -3.3913 14 6 4.9912 7.5881 -2.8449 15 6 5.5253 8.7781 -3.3840 16 1 5.3210 9.0454 -4.4102 17 6 6.3192 9.6112 -2.5890 18 7 6.2954 9.4893 -1.2859 19 14 7.4134 10.8979 -3.3869 20 1 8.7785 10.3426 -3.5691 21 1 7.4798 12.0995 -2.5170 22 1 6.8517 11.2744 -4.7090 23 6 5.6295 6.9530 -1.7614 24 6 5.1040 5.8073 -1.2415 25 6 3.7369 1.9412 -0.1257 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2355 1.9148 2.1493 30 1 0.6636 2.2778 1.3970 31 1 1.7455 4.3440 2.2390 32 1 1.5936 4.3788 0.4656 33 1 4.0942 3.5802 2.0230 34 1 3.8461 5.1287 1.1807 35 1 2.6122 3.7013 -1.6361 36 1 2.4119 5.4459 -3.2833 37 1 3.3285 7.5057 -4.2253 38 1 6.8463 10.0668 -0.7346 39 1 6.5300 7.3752 -1.3406 40 1 5.5894 5.3221 -0.4076 41 1 4.0783 1.4895 -1.0572 42 1 4.2296 1.4545 0.7160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921566367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:31 Heat of formation + Delta-G solvation = -8.346328 kcal Electronic energy + Delta-G solvation = -20888.825380 eV Core-core repulsion = 17958.060366 eV Total energy + Delta-G solvation = -2930.765014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56031 -38.97733 -35.97201 -34.32493 -31.89009 -31.56176 -31.19958 -29.86261 -29.25434 -26.15034 -23.90621 -23.67717 -22.65242 -22.15193 -19.96196 -19.13653 -18.23919 -17.21036 -16.74161 -16.55449 -16.26341 -15.63039 -15.47213 -15.04215 -14.66453 -14.54592 -14.43097 -14.17027 -13.96350 -13.75508 -13.61437 -13.42385 -13.12987 -12.92210 -12.75322 -12.71098 -12.62659 -12.34994 -12.27497 -11.72928 -11.57845 -11.49246 -11.22691 -11.09196 -10.98908 -10.67683 -10.21690 -9.37425 -8.67424 -8.53303 -8.12271 -5.98939 0.73957 1.12743 1.20847 1.40092 1.52684 1.59797 1.65807 2.27926 2.85730 2.90283 3.63516 3.67624 3.87553 3.97347 4.17325 4.22731 4.31218 4.35870 4.38597 4.43642 4.46485 4.52282 4.62826 4.69286 4.83915 4.88820 5.02657 5.04679 5.06449 5.12792 5.18082 5.26354 5.30753 5.37962 5.45190 5.48350 5.72977 5.83524 5.98965 6.21114 6.41970 6.69925 6.90694 7.10512 7.16896 7.33594 8.49980 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038278 B = 0.003154 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.319706 B = 8875.721632 C = 9143.760960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.304 6.304 3 C -0.037 4.037 4 H 0.081 0.919 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.134 4.134 8 C 0.167 3.833 9 H 0.066 0.934 10 N -0.740 5.740 11 C 0.121 3.879 12 C -0.169 4.169 13 C -0.195 4.195 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.842 5.842 19 Si 0.975 3.025 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.262 1.262 23 C -0.142 4.142 24 C -0.172 4.172 25 C -0.095 4.095 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.392 0.608 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.281 0.719 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -15.554 6.578 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.075 6.075 3 C -0.166 4.166 4 H 0.100 0.900 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.173 4.173 8 C 0.059 3.941 9 H 0.084 0.916 10 N -0.375 5.375 11 C 0.022 3.978 12 C -0.191 4.191 13 C -0.215 4.215 14 C 0.031 3.969 15 C -0.538 4.538 16 H 0.083 0.917 17 C -0.180 4.180 18 N -0.471 5.471 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.186 1.186 23 C -0.162 4.162 24 C -0.194 4.194 25 C -0.134 4.134 26 H 0.099 0.901 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.227 0.773 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.855 -16.427 6.902 19.473 hybrid contribution -0.526 1.872 -0.542 2.018 sum -8.381 -14.555 6.361 17.960 Atomic orbital electron populations 1.23438 0.91717 1.07293 1.05667 1.86951 1.10265 1.12286 1.98025 1.23066 0.99661 0.92361 1.01477 0.90023 1.21797 1.01295 0.95044 0.95978 1.21395 0.95547 0.95860 1.01775 1.22000 0.97040 1.00431 0.97863 1.20698 0.96606 0.90804 0.85992 0.91637 1.44012 1.31203 1.25501 1.36766 1.17394 0.95112 0.89758 0.95541 1.20074 1.01569 0.98152 0.99299 1.20734 0.97741 0.99287 1.03753 1.17793 0.91836 0.93587 0.93646 1.19585 1.29787 1.05811 0.98635 0.91659 1.26578 0.96780 0.99786 0.94841 1.69917 1.34327 1.36970 1.05856 0.85304 0.78667 0.77247 0.79093 1.19021 1.19555 1.18570 1.20859 1.00334 0.95275 0.99719 1.20247 0.98094 0.98437 1.02620 1.21539 0.93239 0.94923 1.03679 0.90110 0.87090 0.89481 0.90239 0.91012 0.91262 0.92966 0.90094 0.93884 0.77308 0.86797 0.88838 0.90857 0.88537 0.87579 0.91165 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.45 113.37 1.18 -0.24 16 2 S -0.30 -5.71 21.79 -56.49 -1.23 -6.94 16 3 C -0.04 -0.70 2.48 30.59 0.08 -0.62 16 4 H 0.08 1.62 6.50 -2.39 -0.02 1.60 16 5 C -0.10 -1.75 5.11 30.60 0.16 -1.59 16 6 C -0.11 -2.27 5.77 30.60 0.18 -2.10 16 7 C -0.13 -3.33 5.53 30.59 0.17 -3.17 16 8 C 0.17 4.36 2.47 45.01 0.11 4.47 16 9 H 0.07 1.92 6.44 -2.39 -0.02 1.90 16 10 N -0.74 -22.84 4.37 -318.45 -1.39 -24.24 16 11 C 0.12 5.00 6.65 38.67 0.26 5.25 16 12 C -0.17 -7.32 9.82 22.15 0.22 -7.10 16 13 C -0.19 -9.79 9.74 22.47 0.22 -9.57 16 14 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 15 C -0.51 -28.77 9.03 23.38 0.21 -28.56 16 16 H 0.07 3.62 7.90 -2.91 -0.02 3.60 16 17 C 0.03 1.69 5.14 85.23 0.44 2.13 16 18 N -0.84 -46.31 10.98 21.82 0.24 -46.07 16 19 Si 0.97 40.60 29.59 68.60 2.03 42.63 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 C -0.14 -7.64 8.63 22.48 0.19 -7.44 16 24 C -0.17 -7.90 8.74 22.15 0.19 -7.71 16 25 C -0.09 -1.98 4.90 30.61 0.15 -1.83 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 0.94 7.14 -2.39 -0.02 0.93 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.07 6.92 -2.39 -0.02 1.06 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.05 1.29 7.60 -2.39 -0.02 1.27 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.34 7.66 -2.39 -0.02 1.32 16 35 H 0.39 10.75 6.86 -92.71 -0.64 10.11 16 36 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 38 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.10 5.50 6.19 -2.91 -0.02 5.49 16 40 H 0.11 4.42 6.05 -2.91 -0.02 4.40 16 41 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -61.24 338.77 3.65 -57.58 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.37 Total: 33.33 kcal Atomic # 6 Polarization: -59.93 SS G_CDS: 3.64 Total: -56.29 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.15 Total: -70.31 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.23 Total: -6.94 kcal Total: -61.24 3.65 -57.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921566367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.238 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds